BAC Information

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BAC

Clone NameB6Ng01-061J12
Chromosome1 (Build37)
Map Location 112,610,179 - 112,611,347
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666508, Cdh7, LOC100041429, EG626652
Downstream geneCdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061J12.bB6Ng01-061J12.g
ACCDH882227DH882228
length1,1601,246
definitionDH882227|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J12, 5' end.DH882228|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatgaccccctcacttcttcctttaacctctctgaatttgaaaa
ttgtattaacgttaaaatggtgtctaaattccttctttcttgtttgtatt
tctcaaattttcttataatgttacctgctaagtaccaagctaaattcatc
attaaatatatgatatgaatatgaatatctatgagtttaatgtaagaaat
tttaaatacaatctggatgtagacatatttatttaaaattagcaatacag
ttagaacgtaattgttttttcatatgtgtgtgtgtgtgtccatagaagaa
acacagaaaaactgtatattcacaacggcagagtgagttttcttttattt
tctaaagtgtctaggtaattggtaaacacatattgtgacacatattttgt
ttgctagtattgtcatcattacaatagctgataacaaaacagtgtgttca
gttgttcataaaaataaaatatatttatgacagttatgagattaaaatgt
aaatagggacattcacttttaagtaagttttgttgatgacaatatgcatt
gccttcagtgacatctgtttccaaaactacattgttctttaaagagtgca
gttttctttttaaataataaaaatactatttgatagttaaaatacgatca
agaaaatttatgttataccaaatagtacaatgtcttccacagaaaattta
tatatactaattaaataaactctattatattcttttatattgtaccatat
tcattgttactttttaaaacatgtttttatacattcctgttttgttatta
tatctaacataaaacaaataaataaaagaactccaatgaaaaacctcata
tttgtcttattttggctatgtttgaaaggactttatgtgataattcaaat
ttaattcagaattattgatattttaatttagttagcaactaccagagtac
aaatcaaaagattgcctacttagtaattctcatttatgcatatgttttaa
taatttatgcaaattacatagctgttcttcttgataaatgttatcaccca
ttctacaatgactgagttagtatggtccttgtttgtttttagaagtagtc
atgacattttatatttggttctcctcggtcatttatatgttaattccaga
ctttaacaaa
gaattccaattagatcttctttaaaggtctgatagaactctgcactaaac
ccatctggtcctgggctttttttggtttggagactattaatgactgcttc
tatttctttaggggatataggactgtttagatcattaaccagatctttat
ttaactttggtacctggtatctgtctagaaacttgtccatttcatccagg
ttctccagttttgttgactatagcctttggagaaggatctgatggtgttt
tggatttcttcaggatctgttgttatgtctcccttttcatttctgatttt
gttaattaggatgctttccctgtgccttctagtgagtctggctaatggtt
tatctatctagctggatataaaattaactcaaaaaagtcaatgccctttc
tgtacacaaaggataacaggctaagaaagaaattagggaatcaacaccct
tatcaatagtcacaaataatataaaataccttggtgtgactctaaggaag
tgaaagatctgtatgataggaacttcaagtctctgaagaaagaaattaaa
taagatctcagaagatggaaagatctcccatgctcatggattggcaggat
caatagagtaaaaatggctatcttgccaaaagcaatctacagattcaatg
caatccccatcaaaattacaactcaattcttcaaaaaattagaaagggca
atcagcagattcatctggaataacaaaaaacctaggagagcaaaaactct
tctcaaggataaaagtacctctggtggaatcaccatgcctgacctaaagc
tttactacagagcaattgtgatcaaaactgcatggtactggtatagtgac
agacaagtagaccaatgaaatagaattgaagacccagaaatgaacccaca
cacctatggtcacttgatctttcacagggagctaaaatcatccagtgaag
aaagacagcattttcacaaactgtgctgatacaactggttgttatcatgt
agaagaattcgaatcatccattcctatcctcttgtactagtcaatctagt
ggatcaggaacttccataaaacaagaccttaaacttagagggaaatgtgg
ggaaagcctagagtaatggcacagggagaatccctgaataaaagcaatgg
ctgtgctagatcaggattgacattgacttgaactgcagcttcgcagcaag
aactctcatagacaaagggccaggcaaattggagaagagaagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112610179_112611347
seq2: B6Ng01-061J12.b_45_1204

seq1  GAATTCTATGACCCCCTCACTTCTTCCTTTAACCTCTCTGAATTTGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGACCCCCTCACTTCTTCCTTTAACCTCTCTGAATTTGAAAA  50

seq1  TTGTATTAACGTTAAAATGGTGTCTAAATTCCTTCTTTCTTGTTTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTAACGTTAAAATGGTGTCTAAATTCCTTCTTTCTTGTTTGTATT  100

seq1  TCTCAAATTTTCTTATAATGTTACCTGCTAAGTACCAAGCTAAATTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATTTTCTTATAATGTTACCTGCTAAGTACCAAGCTAAATTCATC  150

seq1  ATTAAATATATGATATGAATATGAATATCTATGAGTTTAATGTAAGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATATGATATGAATATGAATATCTATGAGTTTAATGTAAGAAAT  200

seq1  TTTAAATACAATCTGGATGTAGACATATTTATTTAAAATTAGCAATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATACAATCTGGATGTAGACATATTTATTTAAAATTAGCAATACAG  250

seq1  TTAGAACGTAATTGTTTTTTCATATGTGTGTGTGTGTGTCCATAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACGTAATTGTTTTTTCATATGTGTGTGTGTGTGTCCATAGAAGAA  300

seq1  ACACAGAAAAACTGTATATTCACAACGGCAGAGTGAGTTTTCTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAACTGTATATTCACAACGGCAGAGTGAGTTTTCTTTTATTT  350

seq1  TCTAAAGTGTCTAGGTAATTGGTAAACACATATTGTGACACATATTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTGTCTAGGTAATTGGTAAACACATATTGTGACACATATTTTGT  400

seq1  TTGCTAGTATTGTCATCATTACAATAGCTGATAACAAAACAGTGTGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTATTGTCATCATTACAATAGCTGATAACAAAACAGTGTGTTCA  450

seq1  GTTGTTCATAAAAATAAAATATATTTATGACAGTTATGAGATTAAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCATAAAAATAAAATATATTTATGACAGTTATGAGATTAAAATGT  500

seq1  AAATAGGGACATTCACTTTTAAGTAAGTTTTGTTGATGACAATATGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGGACATTCACTTTTAAGTAAGTTTTGTTGATGACAATATGCATT  550

seq1  GCCTTCAGTGACATCTGTTTCCAAAACTACATTGTTCTTTAAAGAGTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGTGACATCTGTTTCCAAAACTACATTGTTCTTTAAAGAGTGCA  600

seq1  GTTTTCTTTTTAAATAATAAAAATACTATTTGATAGTTAAAATACGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTTTTAAATAATAAAAATACTATTTGATAGTTAAAATACGATCA  650

seq1  AGAAAATTTATGTTATACCAAATAGTACAATGTCTTCCACAGAAAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTTATGTTATACCAAATAGTACAATGTCTTCCACAGAAAATTTA  700

seq1  TATATACTAATTAAATAAACTCTATTATATTCTTTTATATTGTACCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACTAATTAAATAAACTCTATTATATTCTTTTATATTGTACCATAT  750

seq1  TCATTGTTACTTTTTAAAACATGTTTTTATACATTCCTGTTTTGTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTACTTTTTAAAACATGTTTTTATACATTCCTGTTTTGTTATTA  800

seq1  TATCTAACATAAAACAAATAAATAAAAGAACTCCAATGAAAAACCTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAACATAAAACAAATAAATAAAAGAACTCCAATGAAAAACCTCATA  850

seq1  TTTGTCTTATTTTGGCTATGTTTGAAAGGACTTTATGTGATAATTCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTTTGGCTATGTTTGAAAGGACTTTATGTGATAATTCAAAT  900

seq1  TTAATTCAGAATTATTGATATTTTAATTTAGTTAGCAACTACCAGAGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAGAATTATTGATATTTTAATTTAGTTAGCAACTACCAGAGTAC  950

seq1  AAATCAAAAGATTGCCTACTTAGTAATTCTCATTTATGCATATGTTTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAAAGATTGCCTACTTAGTAATTCTCATTTATGCATATGTTTTAA  1000

seq1  TAATTTATGCAAATTACATAGCTGTTCTTCTTGATAAAATGTTATCACCC  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATTTATGCAAATTACATAGCTGTTCTTCTTGAT-AAATGTTATCACCC  1049

seq1  ATTCTACAAATGACTGAGGTATAGTATTGGTCCTTTGTTTGTTTTTTAGA  1100
      ||||||| ||||||||||   ||||| |||||| ||||||||||||   |
seq2  ATTCTAC-AATGACTGAG--TTAGTA-TGGTCC-TTGTTTGTTTTTAGAA  1094

seq1  GTAGTTCATGACATTTTATATCTGGTTCT-CTCAGTCATTTATATGTTAA  1149
      |||| |||||||||||||||| ||||||| ||| ||||||||||||||||
seq2  GTAG-TCATGACATTTTATATTTGGTTCTCCTCGGTCATTTATATGTTAA  1143

seq1  TTCAAGACTTTTTAAACAAA  1169
      ||| |||||||   ||||||
seq2  TTCCAGACTTT---AACAAA  1160