BAC Information

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BAC

Clone NameB6Ng01-061K04
Chromosome1 (Build37)
Map Location 89,466,108 - 89,467,181
singlet/doubletsinglet
Overlap genenone
Upstream genePde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454
Downstream geneNeu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061K04.bB6Ng01-061K04.g
ACCDH882254DH882255
length1,2571,070
definitionDH882254|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K04, 5' end.DH882255|Mus musculus domesticus DNA, BAC clone: B6Ng01-061K04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcccccacctgatagtcaatcaactgatgtgccaaaaaacggg
tcatcgggccctcggtcccagggccctcaaagatatgggaaccggtttgt
caggacccaggaagcagtcagagaggcgacccaggaagacccacaagggt
ggacctgcgtgccgcctccgacttcctattaatgcctcaaatgagtattc
agccggtgccggtggagcctataccatccttgcccccgggaaccatgggc
cttattctcggccgaggttcactcaccttgcagggcttagtagtccaccc
tggaattatggattgtcaacattcccctgaaatacaggtcctgtgctcaa
gccctaaaggcgttttttctattagtaaaggagataggatagctcagctg
ctgctcctccctgataataccagggagaaatctgcaggacctgagataaa
gaaaatgggctcctcaggaaatgattctgcctatttggttgtatctttaa
atgatagacctaagctccgccttaagattaatggaaaagagtttgaaggc
atccttgataccggagcagataaaagtataatttctacacattggtggcc
caaagcatggcccaccacagagtcatctcattcattacagggcctaggat
atcaatcatgtcccactataagctccgttgccttgacgtgggaatcctct
gaagggcagcaagggaaattcataccttatgtgctcccactcccggttaa
cctctggggaagggatattatgcagcatttgggccttattttgtccaatg
aaaacaccccatcaggagggtattcagctaaagcaaaaaatatcatggca
aagatgggttataaagaaggaaaagggttaggacatcaagaacagggaag
gatagagcccatctcacctaatggaaaccaagacagacagggtctgggtt
ttcctagcggtcattgggcagcacgaccataccatggaaacagggactca
gtgtgggttctcatgtctctatcctctgaaaactagaagctgtgatcact
ggtagaggaacattaaataagtcatttggacctctacttcacttgatact
cattttgtattagaaaagtcagagtggaactgctcatgacttcgagccat
aatgagccatgaacttattggcctgatctaggatctcatgaactagcctt
aacgttgtaattatacttacgaatcaagagtgatctctctatacactatg
ttccaag
gaattccccatcatcttttttttttcctttttggagacaagatctcatgt
atcccaggctagcattgaactggagattttatatatatctcagagaatga
ccttgaacttctggtcctccagcttccaactttggagggccgggacccca
ggacccaccatatctgcttcatgcaccactggggatggcaagaaagttga
gaaactaggctctgagctgcactgcctcagccaggcagccttgatttgaa
caccagcccctctgacttccttgaatgagtcagttaacatctctgagcgt
ccatgcccctttatgtaaaaatggcagaagcagaacagggacagttacaa
caactgcatgggattgtcattggggttgggatctgggccaggtgcctgcc
tccaaggttttgatgtatttttaaagaatgaattagaggcacacaagatt
ttcaaaacaaggaaaatgtattcaaaacaaagaaaactacagtttaaata
cattaccaagactgacagtgggctgctcaaaagctcccatttagggcttc
ctttgatgaagttcaagagagggaggagcttggttactaaggagtatagc
acaggtgttactccgttttgattgacaggtttggattaagtaaatctctg
ctcacagtgcatctcccttcccataatccatctgattttaatcatatgca
tgcccaactatacacaagcataggatagtgtgatggtttctatgtgcttg
gtccaggaagtggcactaggacgtgtggccttgttggagtaggtgtgtca
ttgtggggcgtgggctttaagaccatcaccctagctgcctggaagtgagt
cttccactagcagccttcagatattgatgttgaactctgctttgcctgca
ccatgccttgcctggatgctgtcatgttcctactcttgatgaaactggga
ctgaacttctaaaccttgtaagcagctccaattaatgttgttctttgtac
acttgtctgggtcatggtgtctgttcacagcataactctactagacggta
aacagggagtcctgcttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89466108_89467181
seq2: B6Ng01-061K04.g_68_1137 (reverse)

seq1  TTTAGGCAGAACTCCCTGTTTACCGTCTTAGTTAGGGTTTTACTGCTGTG  50
      |||| |||| ||||||||||||||||| ||| ||| |||    |||||||
seq2  TTTAAGCAGGACTCCCTGTTTACCGTC-TAG-TAGAGTT---ATGCTGTG  45

seq1  AACAGACACCATGACCAAGACAAGTGTTACAAAGAACAACATTTAATTGG  100
      |||||||||||||||| ||||||||| |||||||||||||| ||||||||
seq2  AACAGACACCATGACCCAGACAAGTG-TACAAAGAACAACA-TTAATTGG  93

seq1  GGCTGGCTTAC-AGGTTTAGAGGTTCAGT-CCAGTTTCATCAAAGGTAGG  148
       ||| |||||| ||||||||| ||||||| |||||||||||||  |||||
seq2  AGCT-GCTTACAAGGTTTAGAAGTTCAGTCCCAGTTTCATCAAGAGTAGG  142

seq1  AACATGACAGCATCCAGGC-AGGCATGGTGCAGGCAAAGCAGAGTTCAAC  197
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACATGACAGCATCCAGGCAAGGCATGGTGCAGGCAAAGCAGAGTTCAAC  192

seq1  ATCAATATCTGAAGGCTGCTAGTGGAAGACTCACTTCCAGGCAGCTAGGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATCTGAAGGCTGCTAGTGGAAGACTCACTTCCAGGCAGCTAGGG  242

seq1  TGATGGTCTTAAAGCCCACG-CCCACAATGACACACCTACTCCAACAAGG  296
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGATGGTCTTAAAGCCCACGCCCCACAATGACACACCTACTCCAACAAGG  292

seq1  CCACACGTCCTAGTGCCACTTCCTGGACCAAGCACATAGAAACCATCACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTCCTAGTGCCACTTCCTGGACCAAGCACATAGAAACCATCACA  342

seq1  CTATCCTATGCTTGTGTATAGTTGGGCATGCATATGATTAAAATCAGATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTATGCTTGTGTATAGTTGGGCATGCATATGATTAAAATCAGATG  392

seq1  GATTATGGGAAGGGAGATGCACTGTGAGCAGAGATTTACTTAATCCAAAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGGAAGGGAGATGCACTGTGAGCAGAGATTTACTTAATCCAAAC  442

seq1  CTGTCAATCAAAACGGAGTAACACCTGTGCTATACTCCTTAGTAACCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAATCAAAACGGAGTAACACCTGTGCTATACTCCTTAGTAACCAAG  492

seq1  CTCCTCCCTCTCTTGAACTTCATCAAAGGAAGCCCTAAATGGGAGCTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCTCTTGAACTTCATCAAAGGAAGCCCTAAATGGGAGCTTTT  542

seq1  GAGCAGCCCACTGTCAGTCTTGGTAATGTATTTAAACTGTAGTTTTCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCCACTGTCAGTCTTGGTAATGTATTTAAACTGTAGTTTTCTTT  592

seq1  GTTTTGAATACATTTTCCTTGTTTTGAAAATCTTGTGTGCCTCTAATTCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAATACATTTTCCTTGTTTTGAAAATCTTGTGTGCCTCTAATTCA  642

seq1  TTCTTTAAAAATACATCAAAACCTTGGAGGCAGGCACCTGGCCCAGATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAAAATACATCAAAACCTTGGAGGCAGGCACCTGGCCCAGATCC  692

seq1  CAACCCCAATGACAATCCCATGCAGTTGTTGTAACTGTCCCTGTTCTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAATGACAATCCCATGCAGTTGTTGTAACTGTCCCTGTTCTGCT  742

seq1  TCTGCCATTTTTACATAAAGGGGCATGGACGCTCAGAGATGTTAACTGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATTTTTACATAAAGGGGCATGGACGCTCAGAGATGTTAACTGAC  792

seq1  TCATTCAAGGAAGTCAGAGGGGCTGGTGTTCAAATCAAGGCTGCCTGGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAAGGAAGTCAGAGGGGCTGGTGTTCAAATCAAGGCTGCCTGGCT  842

seq1  GAGGCAGTGCAGCTCAGAGCCTAGTTTCTCAACTTTCTTGCCATCCCCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTGCAGCTCAGAGCCTAGTTTCTCAACTTTCTTGCCATCCCCAG  892

seq1  TGGTGCATGAAGCAGATATGGTGGGTCCTGGGGTCCCGGCCCTCCAAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATGAAGCAGATATGGTGGGTCCTGGGGTCCCGGCCCTCCAAAGT  942

seq1  TGGAAGCTGGAGGACCAGAAGTTCAAGGTCATTCTCTGAGATATATATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTGGAGGACCAGAAGTTCAAGGTCATTCTCTGAGATATATATAA  992

seq1  AATCTCCAGTTCAATGCTAGCCTGGGATACATGAGATCTTGTCTCCAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCAGTTCAATGCTAGCCTGGGATACATGAGATCTTGTCTCCAAAA  1042

seq1  AGGAAAAAAAAAAGATGATGGGGAATTC  1074
      ||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAAGATGATGGGGAATTC  1070