BAC Information

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BAC

Clone NameB6Ng01-063D10
Chromosome1 (Build37)
Map Location 79,231,695 - 79,375,190
singlet/doubletdoublet
Overlap genenone
Upstream geneSgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332
Downstream geneScg2, Ap1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063D10.bB6Ng01-063D10.g
ACCDH883375DH883376
length1,0841,135
definitionDH883375|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D10, 5' end.DH883376|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,374,093 - 79,375,190)(79,231,695 - 79,232,847)
sequence
gaattcaccataacaaagaaaggaactgcaaccttgggccagtaaggcca
cattgctaggatctgttcttctctctggtagcaaaggaggaactgatgga
gaagagcaaggaaattggcagtgtaaaacaatcacaagctaaatgaaaga
agccatacatacacaagaggccacaaactgtatgactctgtttatatgaa
atgtccaaaagggaccactctatagagacaaaacataaacctgtgctctt
caggctagagagaggagtgagagtgacttcagacaggctttagggtctaa
tggagatgatcaaacactggattataacgatggctgtacaagtctggaga
tttactaaaatgcattgagtttacagtagaaatgaattacatgctctata
aactagatactaataaagctattttaatatatttattattaatcatttta
ttcatttacatttcaaaccatattccccttcccagttacccctgcacaaa
tgcccattccatcccctttgtgtctatgaggatgctcctccacccactcc
tacctcattgctctagcatccccttatgctggggcattaaccctccacag
gatcaaggacctcccctcccactgatgccagataaagccatcctctgcta
catatgtatctggagctatggatccctacatatatcccaactctttggtt
ggtggtttagtccctgggagctatgggtggtccagttaatatttttttaa
agtccatatgaaagagctgtgatggatcctgtgcgggctgtgattgaaga
cagaccacagaccttgctgcctctgctaagtgacattcctttttcatagt
agctttgcccacaccagaacatgaaattctttccagacccaaagttctca
agtagagagtgagttgtatgtttttgacatatctctgtctgagaaaatct
acttataggaaggggagtatgcaaaactctttatggggtcgtgcaaggct
ttattgagaggaaacccgcattaggagcgccaggcagtttctgtcctttc
tttatgcttttattgatctattttttccatgcat
gaattctgtgagaacaacgtagtaggagaagtgcatctgggcagagaact
taatgaaatagcatggagctatcaagagaagtagggatcacttgagaacc
agccccttgggaagtagtaggagctattgaaaacctttgaaaacagaagt
tgtgaccctgcatctgtgtgccactggaccttctacaaacatttcttcct
gtcttttggattgatctgcatcaccaatcaggaattgtttaccacatttt
taaggagtcctccattatgctaccctgaggatggttttgaggtgggttag
tacactcttaaaccacaacacaagtacagtgcacatccattctgttggcc
agatgctgaaatgtttgttatatttatattactcttatttatacccccct
tatcaacatactccatccaaatatacactagcattctattttgtagaagc
tagaataaaagcatctttgtttttcatttgctttttcaaatcttcaatca
catatagattggtcagttacttattattgctgtgtgtgtgtttgcatatc
tctgtgatgtgtgaatgagtgctggtgtgtgtcaaatgcagaggacagct
ttcagaggttaactctttacctccactgtgggttccaggtatcacactta
agttgtcaggcttgcatgattgttttttttaagttaccttactggtccta
atacgttttggtacaagaaaataaatacaaatctaatctagaccttataa
ttcatgtcattaattaaatggcataccttactggcttctgagtcaatcaa
ataatgtactaagttgtttccaagacagtgtttattttcctttttacact
tgacatgtccattaaagtttagtgagccattgctctgggggaacatatca
tctcagacagtctaaacctggtgtttaaaaccgggctttaaatagtttat
catttctgtgggctacatgaaatctcctctcctgcttcccctccctctcc
tctctttttcttctttcttccccttcctccctcccctcttctctctcctc
tcctccttcttccctcaattataaaccagggaagtaactaaattacattc
cctgcaatccttttggttgctaatgcttagctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_79374093_79375190
seq2: B6Ng01-063D10.b_44_1127 (reverse)

seq1  ATGCATGGAATAAAATAGATCAAATAAAGGCATAAAGAAAGAACAGAAAC  50
      |||||||||| |||||||||| |||||| |||||||||||| ||||||||
seq2  ATGCATGGAA-AAAATAGATC-AATAAAAGCATAAAGAAAGGACAGAAAC  48

seq1  TGCCTGGCGCTTCCTTATGCTGGTTTTCTTCTCACTAAAGCCTTCCACGA  100
      |||||||||| |||| |||| || |||| ||||| ||||||||| |||||
seq2  TGCCTGGCGC-TCCTAATGC-GGGTTTCCTCTCAATAAAGCCTTGCACGA  96

seq1  CCCCCTACAGAGTTTTTGCATTCCTCCCCTTCCTATAGGTAGATTTTCTT  150
      |||| || |||| ||||||| | |||||||||||||| ||||||||||| 
seq2  CCCCATAAAGAG-TTTTGCA-TACTCCCCTTCCTATAAGTAGATTTTCT-  143

seq1  CAAGACAAGAGATATGTCAAAAACATACAACTCACCTCTCTACTTTGAGA  200
        |||| ||||||||||||||||||||||||||| |||||||| ||||||
seq2  -CAGAC-AGAGATATGTCAAAAACATACAACTCA-CTCTCTAC-TTGAGA  189

seq1  ACTTTGGGTCTTGGAAAGAATTTCATGTTCTGGTGGTGGGCAAAGCTACT  250
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  ACTTTGGGTC-TGGAAAGAATTTCATGTTCTGGT-GTGGGCAAAGCTACT  237

seq1  ATGAAAAAGGAATGTCACTTAGCAAGAGGCAGCAAGGTCTGTGGTCTGTC  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGAAAAAGGAATGTCACTTAGC-AGAGGCAGCAAGGTCTGTGGTCTGTC  286

seq1  TTCAATCACAGCCCGCACAGGATCCATCACAGCTCTTTCATATGGACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCACAGCCCGCACAGGATCCATCACAGCTCTTTCATATGGACTTT  336

seq1  AAAAAAATATTAACTGGACCACCCATAGCTCCCAGGGACTAAACCACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATTAACTGGACCACCCATAGCTCCCAGGGACTAAACCACCAA  386

seq1  CCAAAGAGTTGGGATATATGTAGGGATCCATAGCTCCAGATACATATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGTTGGGATATATGTAGGGATCCATAGCTCCAGATACATATGTA  436

seq1  GCAGAGGATGGCTTTATCTGGCATCAGTGGGAGGGGAGGTCCTTGATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGATGGCTTTATCTGGCATCAGTGGGAGGGGAGGTCCTTGATCCT  486

seq1  GTGGAGGGTTAATGCCCCAGCATAAGGGGATGCTAGAGCAATGAGGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGTTAATGCCCCAGCATAAGGGGATGCTAGAGCAATGAGGTAGG  536

seq1  AGTGGGTGGAGGAGCATCCTCATAGACACAAAGGGGATGGAATGGGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGAGGAGCATCCTCATAGACACAAAGGGGATGGAATGGGCATT  586

seq1  TGTGCAGGGGTAACTGGGAAGGGGAATATGGTTTGAAATGTAAATGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGGGTAACTGGGAAGGGGAATATGGTTTGAAATGTAAATGAATA  636

seq1  AAATGATTAATAATAAATATATTAAAATAGCTTTATTAGTATCTAGTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTAATAATAAATATATTAAAATAGCTTTATTAGTATCTAGTTTA  686

seq1  TAGAGCATGTAATTCATTTCTACTGTAAACTCAATGCATTTTAGTAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCATGTAATTCATTTCTACTGTAAACTCAATGCATTTTAGTAAATC  736

seq1  TCCAGACTTGTACAGCCATCGTTATAATCCAGTGTTTGATCATCTCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTTGTACAGCCATCGTTATAATCCAGTGTTTGATCATCTCCATT  786

seq1  AGACCCTAAAGCCTGTCTGAAGTCACTCTCACTCCTCTCTCTAGCCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTAAAGCCTGTCTGAAGTCACTCTCACTCCTCTCTCTAGCCTGAA  836

seq1  GAGCACAGGTTTATGTTTTGTCTCTATAGAGTGGTCCCTTTTGGACATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGTTTATGTTTTGTCTCTATAGAGTGGTCCCTTTTGGACATTT  886

seq1  CATATAAACAGAGTCATACAGTTTGTGGCCTCTTGTGTATGTATGGCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAACAGAGTCATACAGTTTGTGGCCTCTTGTGTATGTATGGCTTC  936

seq1  TTTCATTTAGCTTGTGATTGTTTTACACTGCCAATTTCCTTGCTCTTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTAGCTTGTGATTGTTTTACACTGCCAATTTCCTTGCTCTTCTC  986

seq1  CATCAGTTCCTCCTTTGCTACCAGAGAGAAGAACAGATCCTAGCAATGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTTCCTCCTTTGCTACCAGAGAGAAGAACAGATCCTAGCAATGTG  1036

seq1  GCCTTACTGGCCCAAGGTTGCAGTTCCTTTCTTTGTTATGGTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTACTGGCCCAAGGTTGCAGTTCCTTTCTTTGTTATGGTGAATTC  1084

seq1: chr1_79231695_79232847
seq2: B6Ng01-063D10.g_68_1202

seq1  GAATTCTGTGAGAACAACGTAGTAGGAGAAGTGCATCTGGGCAGAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGAACAACGTAGTAGGAGAAGTGCATCTGGGCAGAGAACT  50

seq1  TAATGAAATAGCATGGAGCTATCAAGAGAAGTAGGGATCACTTGAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATAGCATGGAGCTATCAAGAGAAGTAGGGATCACTTGAGAACC  100

seq1  AGCCCCTTGGGAAGTAGTAGGAGCTATTGAAAACCTTTGAAAACAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTTGGGAAGTAGTAGGAGCTATTGAAAACCTTTGAAAACAGAAGT  150

seq1  TGTGACCCTGCATCTGTGTGCCACTGGACCTTCTACAAACATTTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCTGCATCTGTGTGCCACTGGACCTTCTACAAACATTTCTTCCT  200

seq1  GTCTTTTGGATTGATCTGCATCACCAATCAGGAATTGTTTACCACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGGATTGATCTGCATCACCAATCAGGAATTGTTTACCACATTTT  250

seq1  TAAGGAGTCCTCCATTATGCTACCCTGAGGATGGTTTTGAGGTGGGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTCCTCCATTATGCTACCCTGAGGATGGTTTTGAGGTGGGTTAG  300

seq1  TACACTCTTAAACCACAACACAAGTACAGTGCACATCCATTCTGTTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCTTAAACCACAACACAAGTACAGTGCACATCCATTCTGTTGGCC  350

seq1  AGATGCTGAAATGTTTGTTATATTTATATTACTCTTATTTATACCCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGAAATGTTTGTTATATTTATATTACTCTTATTTATACCCCCCT  400

seq1  TATCAACATACTCCATCCAAATATACACTAGCATTCTATTTTGTAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACATACTCCATCCAAATATACACTAGCATTCTATTTTGTAGAAGC  450

seq1  TAGAATAAAAGCATCTTTGTTTTTCATTTGCTTTTTCAAATCTTCAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAAAGCATCTTTGTTTTTCATTTGCTTTTTCAAATCTTCAATCA  500

seq1  CATATAGATTGGTCAGTTACTTATTATTGCTGTGTGTGTGTTTGCATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGATTGGTCAGTTACTTATTATTGCTGTGTGTGTGTTTGCATATC  550

seq1  TCTGTGATGTGTGAATGAGTGCTGGTGTGTGTCAAATGCAGAGGACAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATGTGTGAATGAGTGCTGGTGTGTGTCAAATGCAGAGGACAGCT  600

seq1  TTCAGAGGTTAACTCTTTACCTCCACTGTGGGTTCCAGGTATCACACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGTTAACTCTTTACCTCCACTGTGGGTTCCAGGTATCACACTTA  650

seq1  AGTTGTCAGGCTTGCATGATTGTTTTTTTTAAGTTACCTTACTGGTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAGGCTTGCATGATTGTTTTTTTTAAGTTACCTTACTGGTCCTA  700

seq1  ATACGTTTTGGTACAAGAAAATAAATACAAATCTAATCTAGACCTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTTTGGTACAAGAAAATAAATACAAATCTAATCTAGACCTTATAA  750

seq1  TTCATGTCATTAATTAAATGGCATACCTTACTGGCTTCTGAGTCAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCATTAATTAAATGGCATACCTTACTGGCTTCTGAGTCAATCAA  800

seq1  ATAATGTACTAAGTTGTTTCCAAGACAGTGTTTATTTTCCTTTTTACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTACTAAGTTGTTTCCAAGACAGTGTTTATTTTCCTTTTTACACT  850

seq1  TGACATGTCCATTAAAGTTTAGTGAGCCATTGCTCTGGGGGAACATATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTCCATTAAAGTTTAGTGAGCCATTGCTCTGGGGGAACATATCA  900

seq1  TCTCAGACAGTCTAAACCTGGTGTTTAAAAACCGGGCTTTAAATAGTTTA  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTCAGACAGTCTAAACCTGGTGTTT-AAAACCGGGCTTTAAATAGTTTA  949

seq1  TCATTTCTGTGGGCTACATGAAAATCTCCTCTCCTGCCTTCCCCTCCCCT  1000
      |||||||||||||||||||| ||||||||||||||| |||||||| ||||
seq2  TCATTTCTGTGGGCTACATG-AAATCTCCTCTCCTG-CTTCCCCT-CCCT  996

seq1  CTCCTCTTCTTTTTCTTCTTTCTTCCCCCTTCCTCCCTTCCCCTCCTTCC  1050
      |||||| ||||||||||||||||| |||||||||||| ||||||| |  |
seq2  CTCCTC-TCTTTTTCTTCTTTCTT-CCCCTTCCTCCC-TCCCCTCTTCTC  1043

seq1  TCTTCCTCCCTCTCCCTTCCTCTCTCCCTCAATTAT-AAGCAGTGAATGT  1099
      |||     |||||||  ||||   |||||||||||| || ||| ||| ||
seq2  TCT-----CCTCTCC--TCCTTCTTCCCTCAATTATAAACCAGGGAA-GT  1085

seq1  AACTTAAATTACATTCCCTGCATTTCCTTTTGTTGTCTTATTGCTTTAGC  1149
      ||| |||||||||||||||||| | | ||| ||||   || ||| |||||
seq2  AAC-TAAATTACATTCCCTGCAATCCTTTTGGTTG--CTAATGC-TTAGC  1131

seq1  TGGA  1153
      ||||
seq2  TGGA  1135