BAC Information

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BAC

Clone NameB6Ng01-064A07
Chromosome1 (Build37)9 (Build37)
Map Location 67,579,280 - 67,579,39791,383,698 - 91,384,849
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064A07.bB6Ng01-064A07.g
ACCDH883933DH883934
length9861,145
definitionDH883933|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A07, 5' end.DH883934|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,579,280 - 67,579,397)(91,383,698 - 91,384,849)
sequence
gaattctcaaaagaataaatataaatgactaaaaacatgttttaatgttc
aacatcttcaatcattatgtaaatgcaaattaaaactactttgagattca
atcctaagctagtcagaatatctaaaatcaaattaaaaacaacaaatttt
gacatatatatggggaaagtggagcacttactcactgcttgtggaagtgc
aaattagaacaaacactttgtaaatcagtgtggttattcctcacaaaacg
gaaagtacacgcactatataaatatatacatatatattccatatgcatgt
atatataactttcattcacatatatatattccatacatatgtatacacac
acacacacatatatatatataaagagagagaaagagagagagagagagag
agagagagagagagagagagagagagagagagagaaagcttctactagac
tcgacagggtgacaaataaaagtctcagaatcaagaatggatgttccttt
ttggagttgttgtcctgtgggttctatagactttcaaacatagagataat
tgccagagatcttggttaccttccaaacatgatgacaagatgctattgct
taagatactatgtgtttgagtcatagaacatggaaacattaggctggcac
taacctgatgcttcattcctactggctagcttttgtgattctggaaggtg
ctatgcacactactggaagggaaacaataattatcagtcttaaccagctg
tgaactctgtgagctacatgactgatagcctggcaagacagtccaactag
tacaatagtgacttgaatattatagaagtaagcaatcatttttaattgga
ttaagccctgccctaaaacattgctggaccaagaactcatggttcgacag
gtcatagcccttgggaaaaacttacaactatattctaataaaagatataa
tataaaactaacttctaacacttattgtatatacat
gaattccattcttgaacatttccttgaagaatgtgagtttcctctcatgt
gtctagtttcggtaaggtgtcatttttattaacatagcccaacactttgc
tgactgtatgttctcctgctcctcaaataaaacatcacaatgaataataa
gaacttcaaagctttatatgagtgtgtatagccttataagcaaacatcca
tgatcagtagcatgatagaaaccaagttacaccaacatggtcttgacgta
attttcaataacgtacagatacttgattgtattatggaactacttggtga
tccatgaagtaaatttaaaatatcctgaaaacagaattaatagtaataaa
ttattttgtagccactacgttttagagtgcttagttgtaatggaaaagtt
gaatagtatcacgtattaagtaacagtattttttcaattcttagttcttt
gatctttctggatatttattgtagttgcacagccctgtcttttgcaaagc
ttttccatcctttcctttgaacttctttcctttgtttttttaaagtacca
ctctactcacttttttatttcttcacaatgttttgattttatttatttgt
atttgttttaattcccttacaaagctccttcaagacttttctttcaggac
ctagtgtactgatcatgatctcactcaagattgattttttttccctgaga
atttcataactccaccttcccctccaggacagttttgctagacataggac
aaaggagccttaaaatatttccagtagattttctgtcagacacttcaaag
ttctaactgaaaatgggtaaatacataaataaatggtttaactaaatact
ttttgagaatttcatacatgagtagtatatttatatcatccccacttcct
ctgtctccccactgtgtaattcacgattcctcctgtgtcctccccactct
ccctgtgtattcacgacttattcttttttaataacaaacattctaatgaa
catgttgaacattgctatttgtgcatgtgttttgaatgacccctggcgat
gggtataataaagaaggctacctggagaaaacacatctggctttctcttc
ctttccattacgcaacctgcttgctctcactgaagtgtgctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_67579280_67579397
seq2: B6Ng01-064A07.b_178_479 (reverse)

seq1  TCTCTCTACTTTCTCTCTATCTCTCTGTCTCTCTCTCTCTCTGTCTCTCT  50
      ||||||     ||||||| ||||||| ||||||||||||||| |||||||
seq2  TCTCTC-----TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  45

seq1  CTCTCTCTTTCTCTCTCTCTCTTTCTGTATATTCCATTG--------CAC  92
      |||||||||||||||||| | | | | |||||     ||         ||
seq2  CTCTCTCTTTCTCTCTCTTTATATATATATATGTGTGTGTGTGTGTATAC  95

seq1  AAATG-AGAGAAAATTTGT-TGTTTTTA----------------------  118
      | ||| |  ||| || | | |||   |                       
seq2  ATATGTATGGAATATATATATGTGAATGAAAGTTATATATACATGCATAT  145

seq1  --------------------------------------------------  118
                                                        
seq2  GGAATATATATGTATATATTTATATAGTGCGTGTACTTTCCGTTTTGTGA  195

seq1  --------------------------------------------------  118
                                                        
seq2  GGAATAACCACACTGATTTACAAAGTGTTTGTTCTAATTTGCACTTCCAC  245

seq1  --------------------------------------------------  118
                                                        
seq2  AAGCAGTGAGTAAGTGCTCCACTTTCCCCATATATATGTCAAAATTTGTT  295

seq1  -------  118
             
seq2  GTTTTTA  302

seq1: chr9_91383698_91384849
seq2: B6Ng01-064A07.g_70_1214 (reverse)

seq1  GCCCAGGCACACTTCAGTGAAGAGCAAGCAGGGTGACGTAATGAGAAAGG  50
      ||||| ||||||||||||| |||||||||||| || ||||||| ||||||
seq2  GCCCA-GCACACTTCAGTG-AGAGCAAGCAGGTTG-CGTAATG-GAAAGG  46

seq1  AAGAGAAGGACAGAATGTGTTTTCTCCAGAT-GACCTCCTTATATTACCC  99
      ||||||| | ||| ||||||||||||||| | | | || ||||  |||||
seq2  AAGAGAAAGCCAG-ATGTGTTTTCTCCAGGTAGCCTTCTTTATTATACCC  95

seq1  AGTCG-CAGTGGTCACTCTAAACACATGCACATATAAGCAATGTTCAACA  148
      | ||| ||| ||||| || ||||||||||||| || ||||||||||||||
seq2  A-TCGCCAGGGGTCATTCAAAACACATGCACAAAT-AGCAATGTTCAACA  143

seq1  TGTTCATTAGATTGTTTGTATATAAAAAAGAATAAGTCGTGAATTACACA  198
      ||||||||||| |||||||   ||||||||||||||||||||| ||||||
seq2  TGTTCATTAGAATGTTTGTTATTAAAAAAGAATAAGTCGTGAA-TACACA  192

seq1  GGGAGAGTGGGGAGGACACAGGAGGAATCGTGAATTACACAGTGGGGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGAGAGTGGGGAGGACACAGGAGGAATCGTGAATTACACAGTGGGGAG-  241

seq1  ACAGAGGAAGTGGGGATGATATAAATATACTACTCATGTATGAAATTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAAGTGGGGATGATATAAATATACTACTCATGTATGAAATTCTC  291

seq1  AAAAAGTATTTAGTTAAACCATTTATTTATGTATTTACCCATTTTCAGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATTTAGTTAAACCATTTATTTATGTATTTACCCATTTTCAGTT  341

seq1  AGAACTTTGAAGTGTCTGACAGAAAATCTACTGGAAATATTTTAAGGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTGAAGTGTCTGACAGAAAATCTACTGGAAATATTTTAAGGCTC  391

seq1  CTTTGTCCTATGTCTAGCAAAACTGTCCTGGAGGGGAAGGTGGAGTTATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCCTATGTCTAGCAAAACTGTCCTGGAGGGGAAGGTGGAGTTATG  441

seq1  AAATTCTCAGGGAAAAAAAATCAATCTTGAGTGAGATCATGATCAGTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCAGGGAAAAAAAATCAATCTTGAGTGAGATCATGATCAGTACA  491

seq1  CTAGGTCCTGAAAGAAAAGTCTTGAAGGAGCTTTGTAAGGGAATTAAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCCTGAAAGAAAAGTCTTGAAGGAGCTTTGTAAGGGAATTAAAAC  541

seq1  AAATACAAATAAATAAAATCAAAACATTGTGAAGAAATAAAAAAGTGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAATAAATAAAATCAAAACATTGTGAAGAAATAAAAAAGTGAGT  591

seq1  AGAGTGGTACTTTAAAAAAACAAAGGAAAGAAGTTCAAAGGAAAGGATGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTACTTTAAAAAAACAAAGGAAAGAAGTTCAAAGGAAAGGATGG  641

seq1  AAAAGCTTTGCAAAAGACAGGGCTGTGCAACTACAATAAATATCCAGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTTGCAAAAGACAGGGCTGTGCAACTACAATAAATATCCAGAAA  691

seq1  GATCAAAGAACTAAGAATTGAAAAAATACTGTTACTTAATACGTGATACT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGAACTAAGAATTGAAAAAATACTGTTACTTAATACGTGATACT  741

seq1  ATTCAACTTTTCCATTACAACTAAGCACTCTAAAACGTAGTGGCTACAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTTTTCCATTACAACTAAGCACTCTAAAACGTAGTGGCTACAAA  791

seq1  ATAATTTATTACTATTAATTCTGTTTTCAGGATATTTTAAATTTACTTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATTACTATTAATTCTGTTTTCAGGATATTTTAAATTTACTTCA  841

seq1  TGGATCACCAAGTAGTTCCATAATACAATCAAGTATCTGTACGTTATTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCACCAAGTAGTTCCATAATACAATCAAGTATCTGTACGTTATTGA  891

seq1  AAATTACGTCAAGACCATGTTGGTGTAACTTGGTTTCTATCATGCTACTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACGTCAAGACCATGTTGGTGTAACTTGGTTTCTATCATGCTACTG  941

seq1  ATCATGGATGTTTGCTTATAAGGCTATACACACTCATATAAAGCTTTGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGATGTTTGCTTATAAGGCTATACACACTCATATAAAGCTTTGAA  991

seq1  GTTCTTATTATTCATTGTGATGTTTTATTTGAGGAGCAGGAGAACATACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATTATTCATTGTGATGTTTTATTTGAGGAGCAGGAGAACATACA  1041

seq1  GTCAGCAAAGTGTTGGGCTATGTTAATAAAAATGACACCTTACCGAAACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAAAGTGTTGGGCTATGTTAATAAAAATGACACCTTACCGAAACT  1091

seq1  AGACACATGAGAGGAAACTCACATTCTTCAAGGAAATGTTCAAGAATGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATGAGAGGAAACTCACATTCTTCAAGGAAATGTTCAAGAATGGA  1141

seq1  ATTC  1152
      ||||
seq2  ATTC  1145