BAC Information

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BAC

Clone NameB6Ng01-064A08
Chromosome1 (Build37)
Map Location 97,503,479 - 97,624,246
singlet/doubletdoublet
Overlap geneSt8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2
Downstream geneGm1833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064A08.bB6Ng01-064A08.g
ACCDH883935DH883936
length1,0911,111
definitionDH883935|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A08, 5' end.DH883936|Mus musculus domesticus DNA, BAC clone: B6Ng01-064A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,623,216 - 97,624,246)(97,503,479 - 97,504,613)
sequence
gaattcagtaagaatattgctattcagtggcattcagaatagcctctggt
attatactatcacttagaataaaagccaactcgctcccatatacaggaat
ttacaatggtttaggaagtagatcggggtgtggttttagagtattgcatt
attcatgagatggttagctagaacggaacttcctagttagaaccatgact
tgggtgtgaaagcccttgccctaggagtgaaaagatctcacacctggctt
ctaagactatagctgaccttagatagggctgactttgtctcagttatttt
tattgcccagttccctccaatctctgtgttttcattcctcagttctgtgt
aagaatcattaagcttccggttaactcatttgtaccttgcgggtatgtca
cccaacttccttattgtcttctgtataaaaagtttgatgcccgatttgac
aaaatacattcagattctacacaacctctcctgtgtgcatctgtctgtca
attcatccgacgctttgcccacctgcgactagagacccgttccacgcaga
caaaggggcccagagtgtccgaggcacttaaacacaactataaagcatcg
attttaatttcatgaattatcctcatttttatgtatttatctatagtgtt
tctcaattggattcataatcacacccaggtctaaactgtgttagaagttt
gaacactttcatcatataaccattttcttgttttatgtactgattttgaa
tctagggcaccacagattatcatgcgtgaatatgacaatagatacacatg
ttcctagttttatttcattttctttttcccttttgtttggttattccctt
tgttcctagaagaagctagaatgtcctttcccaggcaggttaggtagagg
atatggatccaatggcagcaacagagtcacatacagccctgctttattgt
tagcaacacacagagacagcacacatctgtcacaaatatttagggaacct
agtcagccctgcatgatctttggtgtattccagtctctggtgtactcagt
agccagaacatggtctctgtagtcttctgttcatgtcttga
gaattcctcatcaggaaattggggaaactttagattagcttaattgtaac
aggacaggagcaaagccctgccagagatccctaaacaaatataaatattg
atggagatataatttagacacaaaacagaataaagactttgaaaactgga
tagccacttgtaggtacaggatccttcctcactgtgtcttagtctgtgac
atctgactaacatcctccacacaataaactctgtgttctatacacttagt
ctcactccaatgctattcactgacatctggcaaatctttcaaaagtctca
agactctgcggagcccaggaagatctttgtgaatgagaaactaatcttta
accttcttcttcctcatttaaaacaattttctttaagcttgatattctag
attttttcattgcccctcccacatagattataaacataaactcaatcatt
cccctaatataaacacatgtattgtcaattctttccttggctttgcctaa
ctaaatatgttaaaattactcttcatcagataccttcttcattgaattct
atcttagcataataatgaaaacacagaaaaacaaagatggataacagtga
aacatctataatggaagaataaaaattcaaaagtgagtaagaaagtagac
agtgatttctttacccttaaagtccttgacatgctagtacatcctttaaa
atggccacatttctaagtatcctttgttctttaggggaacctggcatttc
taaagcacagtttgataagatgaagcaacagaatctctttgtttattatt
ggtttcatattacagagagcatagtcatgatatttttccaggtgtcatcc
acagatatacaccactgaagtaaatgtttatatggtccaactttgaaatg
cagtctgccattcctaaattattataataaaacatcctcagaggatatag
acttagcctgcccactatttgcagtgatgagcactatctggctatggtgt
gaaatcagatacatctatagtgacagttcaagattctacgttgacttttc
atccattatcttgtactagaatgagtattatttaaaatgtttgggactaa
tttactatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97623216_97624246
seq2: B6Ng01-064A08.b_124_1137 (reverse)

seq1  TCAAGGACATGAACAGAAGACCTACAGAGACCACTGTTCTGGGCCTACTG  50
      |||| ||||||||||||||| |||||||||||| ||||||||  ||||||
seq2  TCAA-GACATGAACAGAAGA-CTACAGAGACCA-TGTTCTGG--CTACTG  45

seq1  AGGTACA-CAGAGACTGGAATACCAACCAAAGATCATGCAGGGGCTGGAC  99
      | ||||| |||||||||||||||  ||||||||||||||| ||||| |||
seq2  A-GTACACCAGAGACTGGAATAC--ACCAAAGATCATGCA-GGGCT-GAC  90

seq1  TAGGTTCCCTAAATATTTGTGACAGATGTGTGCTTGTTCCTCCTGTGTGT  149
      ||||||||||||||||||||||||||||||||| |||  || ||||||||
seq2  TAGGTTCCCTAAATATTTGTGACAGATGTGTGC-TGT--CT-CTGTGTGT  136

seq1  TGCCTAACAATTAAAGCAGGGGCTGTATGTGACTCTGTTGCCTGCCATTG  199
      || ||||||| ||||||| ||||||||||||||||||||| |||||||||
seq2  TG-CTAACAA-TAAAGCA-GGGCTGTATGTGACTCTGTTG-CTGCCATTG  182

seq1  GATCCATATCCTCTACCTAACCTGCCTGGGAAAGGACATTCTAGCTTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATATCCTCTACCTAACCTGCCTGGGAAAGGACATTCTAGCTTCTT  232

seq1  CTAGGAACAAAGGGAATAACCAAACAAAAGGGAAAAAGAAAATGAAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAACAAAGGGAATAACCAAACAAAAGGGAAAAAGAAAATGAAATAA  282

seq1  AACTAGGAACATGTGTATCTATTGTCATATTCACGCATGATAATCTGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAACATGTGTATCTATTGTCATATTCACGCATGATAATCTGTGG  332

seq1  TGCCCTAGATTCAAAATCAGTACCTAAAACAAGAAAATGGTTATATGATG  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGCCCTAGATTCAAAATCAGTACATAAAACAAGAAAATGGTTATATGATG  382

seq1  AAAGTGTTCAAACTTCTAACACAGTTTAGACCTGGGTGTGATTATGAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTCAAACTTCTAACACAGTTTAGACCTGGGTGTGATTATGAATC  432

seq1  CAATTGAGAAACACTATAGATAAATACATAAAAATGAGGATAATTCATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAGAAACACTATAGATAAATACATAAAAATGAGGATAATTCATGA  482

seq1  AATTAAAATCGATGCTTTATAGTTGTGTTTAAGTGCCTCGGACACTCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATCGATGCTTTATAGTTGTGTTTAAGTGCCTCGGACACTCTGG  532

seq1  GCCCCTTTGTCTGCGTGGAACGGGTCTCTAGTCGCAGGTGGGCAAAGCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTTGTCTGCGTGGAACGGGTCTCTAGTCGCAGGTGGGCAAAGCGT  582

seq1  CGGATGAATTGACAGACAGATGCACACAGGAGAGGTTGTGTAGAATCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGAATTGACAGACAGATGCACACAGGAGAGGTTGTGTAGAATCTGA  632

seq1  ATGTATTTTGTCAAATCGGGCATCAAACTTTTTATACAGAAGACAATAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTGTCAAATCGGGCATCAAACTTTTTATACAGAAGACAATAAG  682

seq1  GAAGTTGGGTGACATACCCGCAAGGTACAAATGAGTTAACCGGAAGCTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGGTGACATACCCGCAAGGTACAAATGAGTTAACCGGAAGCTTA  732

seq1  ATGATTCTTACACAGAACTGAGGAATGAAAACACAGAGATTGGAGGGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTACACAGAACTGAGGAATGAAAACACAGAGATTGGAGGGAAC  782

seq1  TGGGCAATAAAAATAACTGAGACAAAGTCAGCCCTATCTAAGGTCAGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATAAAAATAACTGAGACAAAGTCAGCCCTATCTAAGGTCAGCTA  832

seq1  TAGTCTTAGAAGCCAGGTGTGAGATCTTTTCACTCCTAGGGCAAGGGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAGAAGCCAGGTGTGAGATCTTTTCACTCCTAGGGCAAGGGCTT  882

seq1  TCACACCCAAGTCATGGTTCTAACTAGGAAGTTCCGTTCTAGCTAACCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCAAGTCATGGTTCTAACTAGGAAGTTCCGTTCTAGCTAACCAT  932

seq1  CTCATGAATAATGCAATACTCTAAAACCACACCCCGATCTACTTCCTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAATAATGCAATACTCTAAAACCACACCCCGATCTACTTCCTAAA  982

seq1  CCATTGTAAATTCCTGTATATGGGAGCGAGTT  1031
      ||||||||||||||||||||||||||||||||
seq2  CCATTGTAAATTCCTGTATATGGGAGCGAGTT  1014

seq1: chr1_97503479_97504613
seq2: B6Ng01-064A08.g_66_1176

seq1  GAATTCCTCATCAGGAAATTGGGGAAACTTTAGATTAGCTTAATTGTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCAGGAAATTGGGGAAACTTTAGATTAGCTTAATTGTAAC  50

seq1  AGGACAGGAGCAAAGCCCTGCCAGAGATCCCTAAACAAATATAAATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGAGCAAAGCCCTGCCAGAGATCCCTAAACAAATATAAATATTG  100

seq1  ATGGAGATATAATTTAGACACAAAACAGAATAAAGACTTTGAAAACTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATATAATTTAGACACAAAACAGAATAAAGACTTTGAAAACTGGA  150

seq1  TAGCCACTTGTAGGTACAGGATCCTTCCTCACTGTGTCTTAGTCTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCACTTGTAGGTACAGGATCCTTCCTCACTGTGTCTTAGTCTGTGAC  200

seq1  ATCTGACTAACATCCTCCACACAATAAACTCTGTGTTCTATACACTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTAACATCCTCCACACAATAAACTCTGTGTTCTATACACTTAGT  250

seq1  CTCACTCCAATGCTATTCACTGACATCTGGCAAATCTTTCAAAAGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCCAATGCTATTCACTGACATCTGGCAAATCTTTCAAAAGTCTCA  300

seq1  AGACTCTGCGGAGCCCAGGAAGATCTTTGTGAATGAGAAACTAATCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGCGGAGCCCAGGAAGATCTTTGTGAATGAGAAACTAATCTTTA  350

seq1  ACCTTCTTCTTCCTCATTTAAAACAATTTTCTTTAAGCTTGATATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTCTTCCTCATTTAAAACAATTTTCTTTAAGCTTGATATTCTAG  400

seq1  ATTTTTTCATTGCCCCTCCCACATAGATTATAAACATAAACTCAATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCATTGCCCCTCCCACATAGATTATAAACATAAACTCAATCATT  450

seq1  CCCCTAATATAAACACATGTATTGTCAATTCTTTCCTTGGCTTTGCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATATAAACACATGTATTGTCAATTCTTTCCTTGGCTTTGCCTAA  500

seq1  CTAAATATGTTAAAATTACTCTTCATCAGATACCTTCTTCATTGAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATGTTAAAATTACTCTTCATCAGATACCTTCTTCATTGAATTCT  550

seq1  ATCTTAGCATAATAATGAAAACACAGAAAAACAAAGATGGATAACAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGCATAATAATGAAAACACAGAAAAACAAAGATGGATAACAGTGA  600

seq1  AACATCTATAATGGAAGAATAAAAATTCAAAAGTGAGTAAGAAAGTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTATAATGGAAGAATAAAAATTCAAAAGTGAGTAAGAAAGTAGAC  650

seq1  AGTGATTTCTTTACCCTTAAAGTCCTTGACATGCTAGTACATCCTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTCTTTACCCTTAAAGTCCTTGACATGCTAGTACATCCTTTAAA  700

seq1  ATGGCCACATTTCTAAGTATCCTTTGTTCTTTAGGGGAACCTGGCATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCACATTTCTAAGTATCCTTTGTTCTTTAGGGGAACCTGGCATTTC  750

seq1  TAAAGCACAGTTTGATAAGATGAAGCAACAGAATCTCTTTGTTTATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACAGTTTGATAAGATGAAGCAACAGAATCTCTTTGTTTATTATT  800

seq1  GGTTTCATATTACAGAGAGCATAGTCATGATATTTTTCCAGGTGTCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATATTACAGAGAGCATAGTCATGATATTTTTCCAGGTGTCATCC  850

seq1  ACAGATATACACCACTGAAGTAAATGTTTATATGGTCCAACTTTGAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATACACCACTGAAGTAAATGTTTATATGGTCCAACTTTGAAATG  900

seq1  CAGTTCTGCCATTCCTAAAATTATTATAATAAAACCATCCTCAGAGGATA  950
      ||| |||||||||||| ||||||||||||||||| |||||||||||||| 
seq2  CAG-TCTGCCATTCCT-AAATTATTATAATAAAA-CATCCTCAGAGGAT-  946

seq1  ATAGACCTTAGCCTGGCCCACTATTTTGCAAGTGATGAGCACTATCTGGC  1000
      ||||| |||||||| |||||||| ||||| ||||||||||||||||||||
seq2  ATAGA-CTTAGCCT-GCCCACTA-TTTGC-AGTGATGAGCACTATCTGGC  992

seq1  TAATGGTGTTGAAAATCCAGATACATCTATAGTGACAGTTTTCAAGATAT  1050
      | |||||| |||||   |||||||||||||||||||||  |||||||| |
seq2  T-ATGGTG-TGAAA--TCAGATACATCTATAGTGACAG--TTCAAGAT-T  1035

seq1  CTACGTTGACTCTTCATTCCATTATCTTTGTAACTAGAATGATATTTATT  1100
      ||||||||||| |||| ||||||||| |||| ||||||||||    ||||
seq2  CTACGTTGACTTTTCA-TCCATTATC-TTGT-ACTAGAATGA---GTATT  1079

seq1  TTATAAATTGTTATGGTGACTAAATTTACTATCTG  1135
       | |||| |||| ||| |||| |||||||||||||
seq2  ATTTAAAATGTT-TGG-GACT-AATTTACTATCTG  1111