BAC Information

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BAC

Clone NameB6Ng01-065H22
Chromosome1 (Build37)
Map Location 85,038,393 - 85,279,058
singlet/doubletdoublet
Overlap geneEG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065H22.bB6Ng01-065H22.g
ACCDH884954DH884955
length1,075982
definitionDH884954|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H22, 5' end.DH884955|Mus musculus domesticus DNA, BAC clone: B6Ng01-065H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,277,970 - 85,279,058)(85,038,393 - 85,039,381)
sequence
gaattctttgaatcagttcttgggaaattaagctagggaacagataatgg
tagatcctaaggatgacttctgggcatgagaaaccaagaatttgtgaagg
gaaaacaagaaccagacatgaggagataaagacttgagcagctggagtat
tggatcatttgcctgctatcccagcacttgaaagcatccaggaccatgga
aagaactgaggtgggagaaaacggacttggaaggcttccaggaagcaatg
gggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcatt
attatcattatcataattatgacatttatcagtatgtggaggttgggcat
atgttccatggtacacatggagaggccaagaaacaacttgtgagttgggt
ctgttcttccaccatatgggtttcagggatcaaattcaggtcaccaggct
tggtggcaaggacctcgagctagtgagccatttgccagaccaatgacaca
ttttaattgactggtgacatctcagagtagaagatgggagagcgccaaag
gcgaggtgggaataggtagtcaggtggacatccaacctgcttgccaccat
gaggtttaagtgacagataatggatgttgcctgcctatgatttaccagga
agcattttccttctgggggaggctagtgtaccagtcacaccaagcagttg
tggatgggagttcagtgaatttgagcaatgctttggttcaatatgtctaa
gtgccttcttgttacctataatttttgcaaagcctttgagaaggcagagt
gagaagaaaatgaggagacgccatgtgatgcagacacacaatggatgctc
cgattcatggatgctaggatgtgctacagctagaagaacagaagcgtcac
atgggaaaggatgtctgtactttcttgtttgcagtgtgcagggtacttcc
tgggccattgcaaggcatttgctgctggagagtcttttttacacctagca
aggaacggatttacatcagaggtgagcatgacggaaagaaaatcagagaa
agtcagctgagaattggatagcagg
gaattcacggtctcggaggctctcaagaaaaggaaatgtacttcttatcg
cattagaaatggccactttctgtgtcttgaagtgctttaacatacattca
atgagatgcatctctgtgttctcctgttcagtggacatcctagaggagaa
aataccatgggaaaatggttgtcagtacaatagatgattgtggaaactat
aaggttttatatatgaaagaaagacttcaaagaacaaacatacataagat
aaatgtcttgaattaaccccaatgcatcaacagctgaactggaagctatg
ggttcaatcgagggagaccctgcctcaatgtacaagatggagaccgatgg
aagaggaagctctgcatggacctctgacttcctcacacatgtgtacacac
atatatgtgcatctgcacagacatgagctctcacacaagtgaatgtttgt
atatacatgcatatatactgcagaccacagacatacaaaaaataaagtta
aacacaaagataattatgattttaaaattctactacttgttgtcctcata
tagaattagtgaaaagtaatattcccaccgaaatatatagaaatatttct
ggaggtattgttgatagctgaaaaaatagaagccattgaaatggccttta
attgatgagtagaaaaatatagtagacaatttatgcaatgaaatattatg
gaataaaaggggacaaaatgctaatacattctacaatgtggatgaatttc
aaaacatttattccttaatgaaagaaaaaaacacagaaggctaaataatg
tataattccatttgcaagaaacgccaataaataaatctatgcagaaagat
gtattagtggttgcttgacttaggggaacaagaatggactgcacatagct
gcaagggattcttttaggatgggggaggtctacatcctaactaatactgg
gtgctgggtgtacagctctgtagaaagtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85277970_85279058
seq2: B6Ng01-065H22.b_45_1119 (reverse)

seq1  CCTGCTATCCAATTTCTCCAGCTGACTTTCCTCTGCATTTTCTCTTCGGT  50
      |||||||||||| |||| ||||||||||| ||||| ||||||| ||| ||
seq2  CCTGCTATCCAA-TTCT-CAGCTGACTTT-CTCTG-ATTTTCT-TTCCGT  45

seq1  CCATGCTCACCTCTGATGTGAATTCCGTTTCTTTTGCTAGTGGTAAAAGA  100
       |||||||||||||||||| || |||||| |  |||||||  |||||| |
seq2  -CATGCTCACCTCTGATGT-AAATCCGTTCC--TTGCTAGGTGTAAAA-A  90

seq1  TGACTCTCCAGCAGCAAATGACCTGGCAATGGCCCAGGAAGTACCCTGCA  150
       ||||||||||||||||||| ||| |||||||||||||||||||||||||
seq2  AGACTCTCCAGCAGCAAATG-CCTTGCAATGGCCCAGGAAGTACCCTGCA  139

seq1  CACCTGCAAACAAGAAAGGTACAGACATCCTTTCCCATGTGACGCTTCCT  200
      || |||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  CA-CTGCAAACAAGAAA-GTACAGACATCCTTTCCCATGTGACGCTT-CT  186

seq1  GTTCTTCTAGCTGTAGAACATCCTAGCATCCATG-ATGCGAGCATCCATT  249
      |||||||||||||||| ||||||||||||||||| ||  |||||||||||
seq2  GTTCTTCTAGCTGTAGCACATCCTAGCATCCATGAATCGGAGCATCCATT  236

seq1  GTGTGTCTGCAATCACATGGCGTCTCCTCATTTTCTTCTCACTCTGCCTT  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGC-ATCACATGGCGTCTCCTCATTTTCTTCTCACTCTGCCTT  285

seq1  CCTCAAAGGCTTTGCAAAAATTATAGGTAACAAGAAGGCACTTAGACATA  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCAAAGGCTTTGCAAAAATTATAGGTAACAAGAAGGCACTTAGACATA  334

seq1  TTGAACC-AAGCATTGCTCAAATTCACTGAACTCCCATCCACAACTGCTT  398
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCAAAGCATTGCTCAAATTCACTGAACTCCCATCCACAACTGCTT  384

seq1  GGTGTGACTGGTACACTAGCCTCCCCCAGAAGGAAAATGCTTCCTGGTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGACTGGTACACTAGCCTCCCCCAGAAGGAAAATGCTTCCTGGTAA  434

seq1  ATCATAGGCAGGCAACATCCATTATCTGTCACTTAAACCTCATGGTGGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGCAGGCAACATCCATTATCTGTCACTTAAACCTCATGGTGGCA  484

seq1  AGCAGGTTGGATGTCCACCTGACTACCTATTCCCACCTCGCCTTTGGCGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTGGATGTCCACCTGACTACCTATTCCCACCTCGCCTTTGGCGC  534

seq1  TCTCCCATCTTCTACTCTGAGATGTCACCAGTCAATTAAAATGTGTCATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCATCTTCTACTCTGAGATGTCACCAGTCAATTAAAATGTGTCATT  584

seq1  GGTCTGGCAAATGGCTCACTAGCTCAAGGTCCTTGCCACCAAGCCTGGTG  648
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTCTGGCAAATGGCTCACTAGCTCGAGGTCCTTGCCACCAAGCCTGGTG  634

seq1  ACCTGAATTTGATCCCTGAAACCCATATGGTGGAAGAACAGACCCAACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAATTTGATCCCTGAAACCCATATGGTGGAAGAACAGACCCAACTC  684

seq1  ACAAGTTGTTTCTTGGCCTCTCCATGTGTACCATGGAACATATGCCCAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTTTCTTGGCCTCTCCATGTGTACCATGGAACATATGCCCAAC  734

seq1  CTCCACATACTGATAAATGTCATAATTATGATAATGATAATAATGATAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATACTGATAAATGTCATAATTATGATAATGATAATAATGATAAA  784

seq1  AACACTGTGACCTTTCTGATACTGTCATCCATTGGTTTCCCCATTGCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTGACCTTTCTGATACTGTCATCCATTGGTTTCCCCATTGCTTC  834

seq1  CTGGAAGCCTTCCAAGTCCGTTTTCTCCCACCTCAGTTCTTTCCATGGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCCTTCCAAGTCCGTTTTCTCCCACCTCAGTTCTTTCCATGGTC  884

seq1  CTGGATGCTTTCAAGTGCTGGGATAGCAGGCAAATGATCCAATACTCCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGCTTTCAAGTGCTGGGATAGCAGGCAAATGATCCAATACTCCAG  934

seq1  CTGCTCAAGTCTTTATCTCCTCATGTCTGGTTCTTGTTTTCCCTTCACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAAGTCTTTATCTCCTCATGTCTGGTTCTTGTTTTCCCTTCACAA  984

seq1  ATTCTTGGTTTCTCATGCCCAGAAGTCATCCTTAGGATCTACCATTATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTTTCTCATGCCCAGAAGTCATCCTTAGGATCTACCATTATCT  1034

seq1  GTTCCCTAGCTTAATTTCCCAAGAACTGATTCAAAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTAGCTTAATTTCCCAAGAACTGATTCAAAGAATTC  1075

seq1: chr1_85038393_85039381
seq2: B6Ng01-065H22.g_71_1052

seq1  GAATTCACAGTCTCGGAGGCTCTCAAGAAAAGGAAATGTACTTCTTATCG  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGTCTCGGAGGCTCTCAAGAAAAGGAAATGTACTTCTTATCG  50

seq1  CATTAGAAATGGCCACTTTCTGTGTCTTGAAGTGCTTTAACATACATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAATGGCCACTTTCTGTGTCTTGAAGTGCTTTAACATACATTCA  100

seq1  ATGAGATGCATCTCTGTGTTCTCCTGTTCAGTGGACATCCTAGAGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGCATCTCTGTGTTCTCCTGTTCAGTGGACATCCTAGAGGAGAA  150

seq1  AATACCATGGGAAAATGGTTGTCAGTACAATAGATGATTGTGGAAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATGGGAAAATGGTTGTCAGTACAATAGATGATTGTGGAAACTAT  200

seq1  AAGGTTTTATATATGAAAGAAAGACTTCAAAGAACAAACATACATAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTATATATGAAAGAAAGACTTCAAAGAACAAACATACATAAGAT  250

seq1  AAATGTCTTGAGTTAACCCCAATGCATCAACAGCTGAACTGGAAGCTATG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTGAATTAACCCCAATGCATCAACAGCTGAACTGGAAGCTATG  300

seq1  GGTTCAATCGAGGAAGACCCTGCCTCAATGTACAAGATGGAGACCGATGG  350
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTTCAATCGAGGGAGACCCTGCCTCAATGTACAAGATGGAGACCGATGG  350

seq1  AAGAGGAAGCTCTGCATGGACCTCTGACTTCCTCACACATGTGTACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGCTCTGCATGGACCTCTGACTTCCTCACACATGTGTACACAC  400

seq1  ATATATGTGCATCTGCACAGACATGAGCTCTCACACATGTGAATGTTTGT  450
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATATATGTGCATCTGCACAGACATGAGCTCTCACACAAGTGAATGTTTGT  450

seq1  ATATACATGCATATATACTGCAGACCACAGACATACAAAAAATAAAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATGCATATATACTGCAGACCACAGACATACAAAAAATAAAGTTA  500

seq1  AACACAAAGCTAATTATGATTTTAAAATTCTACTACTTGTTGTCCTCATA  550
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGATAATTATGATTTTAAAATTCTACTACTTGTTGTCCTCATA  550

seq1  TAGAATTAGTGAAAAGTAATATTCCCACAGAAATATATGGAAATATTTCT  600
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TAGAATTAGTGAAAAGTAATATTCCCACCGAAATATATAGAAATATTTCT  600

seq1  GGAGGTATTGTTGATAGCTG-AAAAATAAAAGCCATTGAAATCGCCTTTA  649
      |||||||||||||||||||| ||||||| ||||||||||||| |||||||
seq2  GGAGGTATTGTTGATAGCTGAAAAAATAGAAGCCATTGAAATGGCCTTTA  650

seq1  ATTGGTGAGTAGAAAAATAATAGTAGACAATTTATGCAATGAAATATTAT  699
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATTGATGAGTAGAAAAAT-ATAGTAGACAATTTATGCAATGAAATATTAT  699

seq1  GGAATAAAAAAGGGACAAAATGCTAATACATTCTACAATGTGGATGAATT  749
      ||||| |||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAAT-AAAAGGGGACAAAATGCTAATACATTCTACAATGTGGATGAATT  748

seq1  TCAAAAACATTTATTCCTTAATGAAAGAAAACAAACACAGAAGGCTAAAT  799
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TC-AAAACATTTATTCCTTAATGAAAGAAAA-AAACACAGAAGGCTAAAT  796

seq1  AATGTATAATTCCATTTGCAAGAAACGCCAATAAATGAAATCTATGCAGA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATGTATAATTCCATTTGCAAGAAACGCCAATAAAT-AAATCTATGCAGA  845

seq1  AAGATGTATTAGTGGTTGCTTGACTTAGGGGAACAAGAATGGACTGCACG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAGATGTATTAGTGGTTGCTTGACTTAGGGGAACAAGAATGGACTGCACA  895

seq1  TAGCTGCAAGGGATTCTTTTAGGGATGGGGGAGGTCTACATCCTAAACTA  949
      ||||||||||||||||||||| |||||||||||||||||||||| |||||
seq2  TAGCTGCAAGGGATTCTTTTA-GGATGGGGGAGGTCTACATCCT-AACTA  943

seq1  ATACTGTGGTGCTGGGTGTACAGCTCTGTAAAAAGTCATT  989
      |||||| ||||||||||||||||||||||| |||||||||
seq2  ATACTG-GGTGCTGGGTGTACAGCTCTGTAGAAAGTCATT  982