BAC Information

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BAC

Clone NameB6Ng01-066F20
Chromosome1 (Build37)Y (Build37)
Map Location 146,083,770 - 146,084,8911,870,346 - 1,870,567
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdc73, B3galt2, LOC623138, Glrx2, Trove2, Uchl5, Rgs2, Rgs13, Rbm6-ps2
Downstream geneRgs1, EG639456, Rgs21, Rgs18, LOC667877, LOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066F20.bB6Ng01-066F20.g
ACCDH885563DH885564
length1,108263
definitionDH885563|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F20, 5' end.DH885564|Mus musculus domesticus DNA, BAC clone: B6Ng01-066F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,083,770 - 146,084,891)(1,870,346 - 1,870,567)
sequence
gaattctacatgcagaaaggaaggataagcatgccatgcaagcaaaagaa
ggaataaactcgccacaagaaagatggccaactgataatttaggaacagc
aaactgtaggaaaaacaatgaaatgtcaggaaaaagtcatacatgtcaat
cataacactgcacataaaagatgaagcgaaacctacagtctggtggaaaa
agaaaacaaaaacaaataagatctaattgtttgttgcctgcaagaaatgc
acacagcaggacctgggaagatagctcagtgggcaagaaaacttgcttcg
cgtgctgaggacacatgttcaattccccagcatcaatgtaaaagtctgag
tatgtctgtgtgtgcctttagcccagtttttaagagaggagataggtgga
ttccctaaagcttacttactgtccatgatgataaatgctctggttcttct
gcttcgcatcctcccagtgagattgggtgtcagttgtacacctagtcatc
acttcacgatgggagtctcgagaaaaacatacagcacccacccaaatctg
tgaaaatgggggataggagaaagtgcaaaaggaacaaatttgataagact
ggatgctcatggcagttgaatatggtgctggcatgaaggtgggctgcagt
ttctcccatcagaggaagagagagctgccagttccatgtggtggctcctc
ctccttcttccttcctaccttttcctcttctccctcctccttctttttag
gaacctggagtgataacttggaagatcatccatcacaagatccgacttat
tctcttaacatttctatagtgtttagtctattttaatacaacttaatttt
tccttctgatcccaggatacggaaaatcattaaaaaaatgtgggatgtgc
tttaaacatctcagtgtttctgcctgaaagcatggactatggcacacaga
aggatcactgctggtagatgtataattcattatttaatatgagatatttc
aagactattgctgggtatgatctgggctcttttttttagaccaactattg
aaagtatttcctgacagattagcagtcttcagcaaggaaagccggggtct
cactgtac
attgttaacaactgggatcaaaagggcccccaatggaggagctagagaaa
gtacccaaggagctaaagagatctgcaaccctatcggaggaacaacatta
tgaactaaccagtaccccagagctcttgactctagctgcatatgtatcaa
aagatgacctagtcggccatcactggaaagagaggcccattggtcaggca
aacgttatatgccccagtacaggggaattccagggccagaaaatgggaat
gggtgggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_146083770_146084891
seq2: B6Ng01-066F20.b_47_1154

seq1  GAATTCTACATGCAGAAAGGAAGGATAAGCATGCCATGCAAGCAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATGCAGAAAGGAAGGATAAGCATGCCATGCAAGCAAAAGAA  50

seq1  GGAATAAACTCGCCACAAGAAAGATGGCCAACTGATAATTTAGGAACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAACTCGCCACAAGAAAGATGGCCAACTGATAATTTAGGAACAGC  100

seq1  AAACTGTAGGAAAAACAATGAAATGTCAGGAAAAAGTCATACATGTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAGGAAAAACAATGAAATGTCAGGAAAAAGTCATACATGTCAAT  150

seq1  CATAACACTGCACATAAAAGATGAAGCGAAACCTACAGTCTGGTGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACTGCACATAAAAGATGAAGCGAAACCTACAGTCTGGTGGAAAA  200

seq1  AGAAAACAAAAACAAATAAGATCTAATTGTTTGTTGCCTGCAAGAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAAAAACAAATAAGATCTAATTGTTTGTTGCCTGCAAGAAATGC  250

seq1  ACACAGCAGGACCTGGGAAGATAGCTCAGTGGGCAAGAAAACTTGCTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGGACCTGGGAAGATAGCTCAGTGGGCAAGAAAACTTGCTTCG  300

seq1  CGTGCTGAGGACACATGTTCAATTCCCCAGCATCAATGTAAAAGTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGAGGACACATGTTCAATTCCCCAGCATCAATGTAAAAGTCTGAG  350

seq1  TATGTCTGTGTGTGCCTTTAGCCCAGTTTTTAAGAGAGGAGATAGGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGTGTGTGCCTTTAGCCCAGTTTTTAAGAGAGGAGATAGGTGGA  400

seq1  TTCCCTAAAGCTTACTTACTGTCCATGATGATAAATGCTCTGGTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAAGCTTACTTACTGTCCATGATGATAAATGCTCTGGTTCTTCT  450

seq1  GCTTCGCATCCTCCCAGTGAGATTGGGTGTCAGTTGTACACCTAGTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCGCATCCTCCCAGTGAGATTGGGTGTCAGTTGTACACCTAGTCATC  500

seq1  ACTTCACGATGGGAGTCTCGAGAAAAACATACAGCACCCACCCAAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACGATGGGAGTCTCGAGAAAAACATACAGCACCCACCCAAATCTG  550

seq1  TGAAAATGGGGGATAGGAGAAAGTGCAAAAGGAACAAATTTGATAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGGGGGATAGGAGAAAGTGCAAAAGGAACAAATTTGATAAGACT  600

seq1  GGATGCTCATGGCAGTTGAATATGGTGCTGGCATGAAGGTGGGCTGCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCATGGCAGTTGAATATGGTGCTGGCATGAAGGTGGGCTGCAGT  650

seq1  TTCTCCCATCAGAGGAAGAGAGAGCTGCCAGTTCCATGTGGTGGCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATCAGAGGAAGAGAGAGCTGCCAGTTCCATGTGGTGGCTCCTC  700

seq1  CTCCTTCTTCCTTCCTACCTTTTCCTCTTCTCCCTCCTCCTTCTTTTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTTCCTTCCTACCTTTTCCTCTTCTCCCTCCTCCTTCTTTTTAG  750

seq1  GAACCTGGAGTGATAACTTGGAAGATCATCCATCACAAGATCCGACTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGTGATAACTTGGAAGATCATCCATCACAAGATCCGACTTAT  800

seq1  TCTCTTAACATTTCTATAGTGTTTAGTCTATTTTAATACAACTTAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAACATTTCTATAGTGTTTAGTCTATTTTAATACAACTTAATTTT  850

seq1  TCCTTCTGATCCCAGGATACGGAAAATCATTAAAAAAATGTGGGATGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGATCCCAGGATACGGAAAATCATTAAAAAAATGTGGGATGTGC  900

seq1  TTTAAACATCTCAGTGTTTCTGCCTGAAAGCATGGACTATGGCACACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATCTCAGTGTTTCTGCCTGAAAGCATGGACTATGGCACACAGA  950

seq1  AGGAATCACTGCTGGTAGATGTATTAATTCATTATTTAATAATGAGATAT  1000
      ||| ||||||||||||||||||| |||||||||||||||| |||||||| 
seq2  AGG-ATCACTGCTGGTAGATGTA-TAATTCATTATTTAAT-ATGAGATA-  996

seq1  TTTCAAGACTA-TGCTGGGTATGATCTGGGCTCTTTTTTTTAGGACCAAC  1049
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  TTTCAAGACTATTGCTGGGTATGATCTGGGCTCTTTTTTTTA-GACCAAC  1045

seq1  TATTGAAAGTAATTTTCCTGAACAGAATTAGCAAGTCTTCAAGCAAGGAA  1099
      |||||||||||  ||||||| |||| |||||| ||||||| |||||||||
seq2  TATTGAAAGTA--TTTCCTG-ACAG-ATTAGC-AGTCTTC-AGCAAGGAA  1089

seq1  TAGTCTGTGGTTCTTCACTGTAC  1122
       || | | |||   |||||||||
seq2  -AG-CCGGGGT--CTCACTGTAC  1108

seq1: chrY_1870346_1870567
seq2: B6Ng01-066F20.g_117_338

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||| ||||||||||||||| || |||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCTATCGGAGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGACCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      || || |||||| |||||||||||||||||||||||  ||||||||| ||
seq2  GGTCAGGCAAACGTTATATGCCCCAGTACAGGGGAATTCCAGGGCCAGAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGG  222
      |  || | ||||||||| ||||
seq2  AATGGGAATGGGTGGGTGGGGG  222