BAC Information

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BAC

Clone NameB6Ng01-066K22
Chromosome1 (Build37)
Map Location 106,696,994 - 106,815,732
singlet/doubletdoublet
Overlap geneCdh20
Upstream geneLOC383546, LOC100041134
Downstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066K22.bB6Ng01-066K22.g
ACCDH885793DH885794
length1,1361,082
definitionDH885793|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K22, 5' end.DH885794|Mus musculus domesticus DNA, BAC clone: B6Ng01-066K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,696,994 - 106,698,143)(106,814,642 - 106,815,732)
sequence
gaattctttgctggccaatggtggcaatgggagcaccagaaccatgagaa
gtcatttgtatgcctgccggtctctggtcctaaacagctgagtacagaaa
aggcatgtttagcaatgtttacagcaatctaaccgagaaatagtttgtct
attaaatctaaaagtgaattttaagtggatgtagtttttatttaagttta
ttagcaagtcatttttattctatcttacaaaattattagaacataataaa
atagaaaatacagttagcctgtccatcaccaaagatgataagatgccatt
tgtctttttacagacagttgtagtgtgccttgtattcccaaccttgtctt
tgtcttatagcaacctgctgaatattcaatgtctattttataggggaatt
ttcctctccagggatggtgaatgagacttttacagccacacagcaagtgt
gaggcacacttaggcacagagcccataagcccaccttcctgcttttctcc
tgccttccgagcttagaaagtgaaattgcagagaagttaagtgacaacat
agcagtaaatgcatttcacattcttctaggtaaagattcaaggcagtatt
taaaattccttttactttgtatatcagaagctcacataccggtttcctgc
actgcaagtaaaaaatagaaatctacaattatgaataatcatgattgtta
gagccaggacagacaaatactcacccactggcccagtgctttttcttctt
atcttttctgtttctttcatgaatttcttaaggatttgtgtgtataagta
ggtatacatatatgtgtgtgtgttttatgtgtgtgtatacacacctatag
atacatgtacatatacattatcatatacatataggaccatgagacaacca
tctctacaggtgctgcacattaattacacttccttaagttataaatcata
ataaattatcagggaactatggctgagttgtcttacaaactctttgtaga
atggtgtctaaatccctaagcgaagttgaggctttacagcatacagaatc
tgcaactgttatttaagctcatttctttatctggaaaagctatgctgttt
caggatttagactctactacacctaagccacatctg
gaattcaataaaacttgggaagaattaaatacaaagtgaagagtaattta
gcaaaatggattgtcatttcagagaagctcttggcatttctgtggcagta
ttgaaagagatgcattttgaggactactagtgagatcctgggagggggat
cctcactagtgtgctagtctgtcagcactataatttacctgggtttgggg
aaggaaggatattgaagccccgatgatggaacccaagcaacccaggaaag
gagagaaaggtggaagtacaactcagtgacatacaatttttttaaaaaca
gcattacagaaaacagacaaggcttaggctacaagaagagggaccacaaa
cttataagagcagtggggatttagaaggctggagattcctgactgtgacc
tgtaaacagggactggcgactgcagagatgatggaacctcctgcctttcc
tggccagggcatgacatttgctgcactgaatacagggaagacgttttcca
ccaacagaagtgacaacctgttacaggcgagtgttctggaaacacagaga
cctcgggtactccacaaaccttagaatccaagggtgtcctcctagcagtt
agcactgataacatttcacatatattttctcaggaaaatgttgaatttca
agcatgcagaaaaaagaattatctgtctttttaaaaagtgcagtcctaat
tagttctactcttgctgtaaagtgtcagttaaacagaaaaaaaaaaaaaa
aaaaccaaaaaaccaaaaaccaaaaaaaaaaaaaaaaaccctttccctaa
caacctgctgattgaagagaatttgcacaccacagaagtgagaggccagg
atcgctggctctttggtgtggaacagtggttgttattagggaatatagtc
agctttcctgctttgatgctggcattttctcccttctgatatttaaatac
gtatatagtgatatgtggaggtcagatgttactattgggaactgcactgg
cagttacaattcttataattattatgtcagtaaaggaactggttctctgg
gataaaaaataccacaagctgcatcattatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106696994_106698143
seq2: B6Ng01-066K22.b_49_1184

seq1  GAATTCTTTGCTGGCCAATGGTGGCAATGGGAGCACCAGAACCATGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTGGCCAATGGTGGCAATGGGAGCACCAGAACCATGAGAA  50

seq1  GTCATTTGTATGCCTGCCGGTCTCTGGTCCTAAACAGCTGAGTACAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGTATGCCTGCCGGTCTCTGGTCCTAAACAGCTGAGTACAGAAA  100

seq1  AGGCATGTTTAGCAATGTTTACAGCAATCTAACCGAGAAATAGTTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTTTAGCAATGTTTACAGCAATCTAACCGAGAAATAGTTTGTCT  150

seq1  ATTAAATCTAAAAGTGAATTTTAAGTGGATGTAGTTTTTATTTAAGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCTAAAAGTGAATTTTAAGTGGATGTAGTTTTTATTTAAGTTTA  200

seq1  TTAGCAAGTCATTTTTATTCTATCTTACAAAATTATTAGAACATAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGTCATTTTTATTCTATCTTACAAAATTATTAGAACATAATAAA  250

seq1  ATAGAAAATACAGTTAGCCTGTCCATCACCAAAGATGATAAGATGCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAATACAGTTAGCCTGTCCATCACCAAAGATGATAAGATGCCATT  300

seq1  TGTCTTTTTACAGACAGTTGTAGTGTGCCTTGTATTCCCAACCTTGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTACAGACAGTTGTAGTGTGCCTTGTATTCCCAACCTTGTCTT  350

seq1  TGTCTTATAGCAACCTGCTGAATATTCAATGTCTATTTTATAGGGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATAGCAACCTGCTGAATATTCAATGTCTATTTTATAGGGGAATT  400

seq1  TTCCTCTCCAGGGATGGTGAATGAGACTTTTACAGCCACACAGCAAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCCAGGGATGGTGAATGAGACTTTTACAGCCACACAGCAAGTGT  450

seq1  GAGGCACACTTAGGCACAGAGCCCATAAGCCCACCTTCCTGCTTTTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACACTTAGGCACAGAGCCCATAAGCCCACCTTCCTGCTTTTCTCC  500

seq1  TGCCTTCCGAGCTTAGAAAGTGAAATTGCAGAGAAGTTAAGTGACAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCCGAGCTTAGAAAGTGAAATTGCAGAGAAGTTAAGTGACAACAT  550

seq1  AGCAGTAAATGCATTTCACATTCTTCTAGGTAAAGATTCAAGGCAGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAATGCATTTCACATTCTTCTAGGTAAAGATTCAAGGCAGTATT  600

seq1  TAAAATTCCTTTTACTTTGTATATCAGAAGCTCACATACCGGTTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTCCTTTTACTTTGTATATCAGAAGCTCACATACCGGTTTCCTGC  650

seq1  ACTGCAAGTAAAAAATAGAAATCTACAATTATGAATAATCATGATTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAGTAAAAAATAGAAATCTACAATTATGAATAATCATGATTGTTA  700

seq1  GAGCCAGGACAGACAAATACTCACCCACTGGCCCAGTGCTTTTTCTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGACAGACAAATACTCACCCACTGGCCCAGTGCTTTTTCTTCTT  750

seq1  ATCTTTTCTGTTTCTTTCATGAATTTCTTAAGGATTTGTGTGTATAAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTGTTTCTTTCATGAATTTCTTAAGGATTTGTGTGTATAAGTA  800

seq1  GGTATACATATATGTGTGTGTGTTTTATGTGTGTGTATACACACCTATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATACATATATGTGTGTGTGTTTTATGTGTGTGTATACACACCTATAG  850

seq1  ATACATGTACATATACATTATCATATACATATAGGACCATGAGACAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTACATATACATTATCATATACATATAGGACCATGAGACAACCA  900

seq1  TCTCTACAGGTGCTGCACATTAATTACACTTCCTTAAGTTATAAATCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAGGTGCTGCACATTAATTACACTTCCTTAAGTTATAAATCATA  950

seq1  ATAAATTATCAGGGGAACTATGGCTGAGTTGTCTTTACAAACTTCTTTGT  1000
      ||||||||||| ||||||||||||||||||||| |||||||| |||||||
seq2  ATAAATTATCA-GGGAACTATGGCTGAGTTGTC-TTACAAAC-TCTTTGT  997

seq1  AGAATGGTTGTCTAAATCCCTAAGCGAAGTTGAGGCTTTACAGCATACAG  1050
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGG-TGTCTAAATCCCTAAGCGAAGTTGAGGCTTTACAGCATACAG  1046

seq1  AATCTGCAACTGTTTATTTTAAAGCCCATTTCTTTAACCTGGAAAAGCCT  1100
      |||||||||||| ||||||  |||| ||||||||| | ||||||||| ||
seq2  AATCTGCAACTG-TTATTT--AAGCTCATTTCTTT-ATCTGGAAAAG-CT  1091

seq1  ATGCTGTTTCAGTATTTTAGACTCACCTTACCAC-CCTAAGCCCACATCT  1149
      |||||||||||| | |||||||||    ||| || |||||| ||||||||
seq2  ATGCTGTTTCAGGA-TTTAGACTC----TACTACACCTAAG-CCACATCT  1135

seq1  G  1150
      |
seq2  G  1136

seq1: chr1_106814642_106815732
seq2: B6Ng01-066K22.g_68_1149 (reverse)

seq1  AGATAATGAATGCAGCTTTGTGTATTTTCTATCCCAGAGAAACTCAGTTC  50
      |||||||| |||||||||   ||||||| ||||||||||||   ||||||
seq2  AGATAATG-ATGCAGCTTGTGGTATTTTTTATCCCAGAGAA--CCAGTTC  47

seq1  CTTTACTGACATAATAATGTATAAGAATTGTAACTGCCAGTGCAGTTCCC  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTACTGACATAATAAT-TATAAGAATTGTAACTGCCAGTGCAGTTCCC  96

seq1  ACTAGTAACATCTGAACCTCCACATATCACTATTATACGGTATTTAAATA  150
      | |||||||||||| ||||||||||||||||| ||||| |||||||||||
seq2  AATAGTAACATCTG-ACCTCCACATATCACTA-TATAC-GTATTTAAATA  143

seq1  TCAGAAGGGGAGAAAATGCCAGCATCAAAGCAGGGAAAGCTGACTATAAT  200
      |||||| ||||||||||||||||||||||||| |||||||||||||| ||
seq2  TCAGAA-GGGAGAAAATGCCAGCATCAAAGCA-GGAAAGCTGACTAT-AT  190

seq1  TCCCTAATAACAACCACTGTTCCACACCAAGGAGCCAGCGATCCTGGCCT  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCCTAATAACAACCACTGTTCCACACCAAAGAGCCAGCGATCCTGGCCT  240

seq1  CTCACTTCTGTGGTGTGCAAATTCTCTTCAATCAGCAGGTTGTTAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTCTGTGGTGTGCAAATTCTCTTCAATCAGCAGGTTGTTAGGGAA  290

seq1  AGGGTTTTTTTTTTTTTTTTTGGTTTTTGGTTTTTTGG-TTTTTTTTTTT  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGGGTTTTTTTTTTTTTTTTTGGTTTTTGGTTTTTTGGTTTTTTTTTTTT  340

seq1  TTTTTTCTGTTTAACTGACACTTTACAGCAAGAGTAGAACTAATTAGGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGTTTAACTGACACTTTACAGCAAGAGTAGAACTAATTAGGAC  390

seq1  TGCACTTTTTAAAAAGACAGATAATTCTTTTTTCTGCATGCTTGAAATTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTTTAAAAAGACAGATAATTCTTTTTTCTGCATGCTTGAAATTC  440

seq1  AACATTTTCCTGAGAAAATATATGTGAAATGTTATCAGTGCTAACTGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCCTGAGAAAATATATGTGAAATGTTATCAGTGCTAACTGCTA  490

seq1  GGAGGACACCCTTGGATTCTAAGGTTTGTGGAGTACCCGAGGTCTCTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGACACCCTTGGATTCTAAGGTTTGTGGAGTACCCGAGGTCTCTGTG  540

seq1  TTTCCAGAACACTCGCCTGTAACAGGTTGTCACTTCTGTTGGTGGAAAAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAACACTCGCCTGTAACAGGTTGTCACTTCTGTTGGTGGAAAAC  590

seq1  GTCTTCCCTGTATTCAGTGCAGCAAATGTCATGCCCTGGCCAGGAAAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCTGTATTCAGTGCAGCAAATGTCATGCCCTGGCCAGGAAAGGC  640

seq1  AGGAGGTTCCATCATCTCTGCAGTCGCCAGTCCCTGTTTACAGGTCACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTCCATCATCTCTGCAGTCGCCAGTCCCTGTTTACAGGTCACAG  690

seq1  TCAGGAATCTCCAGCCTTCTAAATCCCCACTGCTCTTATAAGTTTGTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCTCCAGCCTTCTAAATCCCCACTGCTCTTATAAGTTTGTGGT  740

seq1  CCCTCTTCTTGTAGCCTAAGCCTTGTCTGTTTTCTGTAATGCTGTTTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTTGTAGCCTAAGCCTTGTCTGTTTTCTGTAATGCTGTTTTTA  790

seq1  AAAAAATTGTATGTCACTGAGTTGTACTTCCACCTTTCTCTCCTTTCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTGTATGTCACTGAGTTGTACTTCCACCTTTCTCTCCTTTCCTG  840

seq1  GGTTGCTTGGGTTCCATCATCGGGGCTTCAATATCCTTCCTTCCCCAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTGGGTTCCATCATCGGGGCTTCAATATCCTTCCTTCCCCAAAC  890

seq1  CCAGGTAAATTATAGTGCTGACAGACTAGCACACTAGTGAGGATCCCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAATTATAGTGCTGACAGACTAGCACACTAGTGAGGATCCCCCT  940

seq1  CCCAGGATCTCACTAGTAGTCCTCAAAATGCATCTCTTTCAATACTGCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATCTCACTAGTAGTCCTCAAAATGCATCTCTTTCAATACTGCCA  990

seq1  CAGAAATGCCAAGAGCTTCTCTGAAATGACAATCCATTTTGCTAAATTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGCCAAGAGCTTCTCTGAAATGACAATCCATTTTGCTAAATTAC  1040

seq1  TCTTCACTTTGTATTTAATTCTTCCCAAGTTTTATTGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTTTGTATTTAATTCTTCCCAAGTTTTATTGAATTC  1082