BAC Information

Click to search

BAC

Clone NameB6Ng01-067P12
Chromosome1 (Build37)
Map Location 51,509,496 - 51,602,787
singlet/doubletdoublet
Overlap geneObfc2a
Upstream geneTmeff2, Sdpr, LOC383504
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067P12.bB6Ng01-067P12.g
ACCDH886696DH886697
length1,1151,127
definitionDH886696|Mus musculus domesticus DNA, BAC clone: B6Ng01-067P12, 5' end.DH886697|Mus musculus domesticus DNA, BAC clone: B6Ng01-067P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,601,656 - 51,602,787)(51,509,496 - 51,510,627)
sequence
gaattccaattttgccttttttcgtcattcagtagattcgtgtatcactc
acacgtcaaggaacccatgtctgaactcgccaaggcgtgtggctgactga
cagcaagccttccttcccaggtgtttcaaagggcattcttgtgggtagca
gactgtttacagacagttttgctttgttttgttttttaccagtggcacaa
aagcaatctacagattcaatgcaatcgccatcaaaattccaactcaattc
ttcaatgaattagaaggagcaatttgcaaattcatctggaataacaaaaa
acctaggatagcaaaaactcttctcaaggataaaagaacctcgggtggaa
tcaccatgcctgacctaaagctttactacagagcaattgtgatcaaaact
gcatggtactggtatagagacagacaagtagaccaatggaaaagaattga
agacccagaaatgaacccacacacctatggtcacttgatcttcgacaagg
gagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgc
tggcacaactggttgttatcgtgtagaagaatgcgaatcgatccatactt
atctccttgtactaaggtcaaatctaagtggatcaaggaacttcacataa
aaccagagacactgaaacttatagaggagaaagtggggaaaagccttgaa
gatatgggcacaggggaaaaattcctgaacagaacagcaatggcttgtgc
tgtaagatcgagaattgacaaatgggacctaatgaaactccaaagtttct
gcaaggcaaaagacaccgtcaataagacaaaaagaccaccaacagattgg
gaaaggatctttacctatcctaaatcagataggactaatatccaacatat
ataaagaactcaagaaggtggacttcagaaaatcaaataaccccattaaa
aatggggctcagaactgaacaaagaattctcacttgagaataccgaatgg
cagagaacactgaaaaatgttcaacatttgtgattctatgcttgttccct
ctatactctccatgctctttgttgttgtcactacatgaaaattataatgt
gctactttcatgttc
gaattcatctcctgaaaggttaaacagcaaaattaaactcattatcttcc
tacagcttctcaagccagcaaatcagttccctaagttattttatcttttg
ttgctatttaattttttctctcctgtcttgtgggacagtctagcccttcc
ttcctcctccttcttaggttctctctgtgtccattttcttcccatttcta
ccgctcacacctctttatctcaaactgaaatcttgcagccgttcagttgt
ttacctctctagttggcagtgtcaacctgggcgagtggggcctaaaagtg
aggtgaactaaagtctcatgcaatcgccaactttattgagagcctcagaa
aatttatactttcggggttaagaagactcagacaaacaaggagttcaatc
acaaagagaagcggcacatggaaaaaccatgttttcttcatagaagcatg
cgagtgacaactgctgaaatgaactcctatatgccacctctgggtgggac
atgaaagtccactacaagaacaatttcatgtttttgaagaaactgaagtc
acaagactcttgtcttgttttcttggagttttcttacaagcactcagaat
cctcacacagctccattcttggactgtgttccaatatcctatgacagatt
tccttttcttttgtctccccttctcctcttttctgtatagtcactcttgc
agttttctagaaatgttttcatttaaaacattcaaagtctccttttataa
cacacatagttaagtactttggaatggaacacaaagcttcccagtgctaa
tatttgtgctaaatttttatctgtacttttaataacatttcaacatggat
cctatcttagtcttcatgtgagactaaaaactaattttaaaattaaataa
aacattgtttatgtttataatgtcttcccatgggaagaactcttagaaat
tgatagcaataggtacaatgtagactctcactgtaacaacacttctgctt
tttaacctgaatgtcctcactgacatccaaggcttgtatgtatctcactg
gcatctactcatacagcagtagttgtcttacggatgacatggctttagaa
tatggttgaaggaatgaaaatatgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51601656_51602787
seq2: B6Ng01-067P12.b_44_1158 (reverse)

seq1  GAACATGAAAGTAGCACATTATAA-TCTCATGTTAAGTGACAAACAACAA  49
      |||||||||||||||||||||||| | ||||||  |||||| ||||||||
seq2  GAACATGAAAGTAGCACATTATAATTTTCATGT--AGTGAC-AACAACAA  47

seq1  AGGAGCATGGAGAAGTATAGAAGGGAAACATAGCATTAGAAAATCACAAA  99
      | |||||||||| ||||||||  || |||| |||||   | |||||||||
seq2  A-GAGCATGGAG-AGTATAGA--GGGAACA-AGCAT---AGAATCACAAA  89

seq1  TGTTGAACATTTTTTCAGGTGTTTCTCTGCCATTCGGTATTCCTCAGGTG  149
      ||||||||| ||||||| ||| ||||||||||||||||||| |||| |||
seq2  TGTTGAACA-TTTTTCA-GTG-TTCTCTGCCATTCGGTATT-CTCAAGTG  135

seq1  AGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGAT  199
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAATTCTTTGTTCAGTTCTGAGCCCCA-TTTTTAATGGGGTTATTTGAT  184

seq1  TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT--  232

seq1  CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC  282

seq1  TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC  332

seq1  ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT  382

seq1  TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA  432

seq1  CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG  482

seq1  ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCG  532

seq1  CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA  582

seq1  TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG  632

seq1  TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTTTTCCATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTTTTCCATTG  682

seq1  GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTGATCACAATTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTGATCACAATTG  732

seq1  CTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCCGAGGTTCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCCGAGGTTCTT  782

seq1  TTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGAT  832

seq1  GAATTTGCAAATTGCTCCTTCTAATTCATTGAAGAATTGAGTTGGAATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCAAATTGCTCCTTCTAATTCATTGAAGAATTGAGTTGGAATTT  882

seq1  TGATGGCGATTGCATTGAATCTGTAGATTGCTTTTGTGCCACTGGTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCGATTGCATTGAATCTGTAGATTGCTTTTGTGCCACTGGTAAAA  932

seq1  AACAAAACAAAGCAAAACTGTCTGTAAACAGTCTGCTACCCACAAGAATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAGCAAAACTGTCTGTAAACAGTCTGCTACCCACAAGAATG  982

seq1  CCCTTTGAAACACCTGGGAAGGAAGGCTTGCTGTCAGTCAGCCACACGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAAACACCTGGGAAGGAAGGCTTGCTGTCAGTCAGCCACACGCC  1032

seq1  TTGGCGAGTTCAGACATGGGTTCCTTGACGTGTGAGTGATACACGAATCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGAGTTCAGACATGGGTTCCTTGACGTGTGAGTGATACACGAATCT  1082

seq1  ACTGAATGACGAAAAAAGGCAAAATTGGAATTC  1132
      |||||||||||||||||||||||||||||||||
seq2  ACTGAATGACGAAAAAAGGCAAAATTGGAATTC  1115

seq1: chr1_51509496_51510627
seq2: B6Ng01-067P12.g_68_1194

seq1  GAATTCATCTCCTGAAAGGTTAAACAGCAAAATTAAACTCATTATCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCCTGAAAGGTTAAACAGCAAAATTAAACTCATTATCTTCC  50

seq1  TACAGCTTCTCAAGCCAGCAAATCAGTTCCCTAAGTTATTTTATCTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCTCAAGCCAGCAAATCAGTTCCCTAAGTTATTTTATCTTTTG  100

seq1  TTGCTATTTAATTTTTTCTCTCCTGTCTTGTGGGACAGTCTAGCCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTTAATTTTTTCTCTCCTGTCTTGTGGGACAGTCTAGCCCTTCC  150

seq1  TTCCTCCTCCTTCTTAGGTTCTCTCTGTGTCCATTTTCTTCCCATTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCTTCTTAGGTTCTCTCTGTGTCCATTTTCTTCCCATTTCTA  200

seq1  CCGCTCACACCTCTTTATCTCAAACTGAAATCTTGCAGCCGTTCAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCACACCTCTTTATCTCAAACTGAAATCTTGCAGCCGTTCAGTTGT  250

seq1  TTACCTCTCTAGTTGGCAGTGTCAACCTGGGCGAGTGGGGCCTAAAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTCTAGTTGGCAGTGTCAACCTGGGCGAGTGGGGCCTAAAAGTG  300

seq1  AGGTGAACTAAAGTCTCATGCAATCGCCAACTTTATTGAGAGCCTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAACTAAAGTCTCATGCAATCGCCAACTTTATTGAGAGCCTCAGAA  350

seq1  AATTTATACTTTCGGGGTTAAGAAGACTCAGACAAACAAGGAGTTCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATACTTTCGGGGTTAAGAAGACTCAGACAAACAAGGAGTTCAATC  400

seq1  ACAAAGAGAAGCGGCACATGGAAAAACCATGTTTTCTTCATAGAAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAGCGGCACATGGAAAAACCATGTTTTCTTCATAGAAGCATG  450

seq1  CGAGTGACAACTGCTGAAATGAACTCCTATATGCCACCTCTGGGTGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGACAACTGCTGAAATGAACTCCTATATGCCACCTCTGGGTGGGAC  500

seq1  ATGAAAGTCCACTACAAGAACAATTTCATGTTTTTGAAGAAACTGAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTCCACTACAAGAACAATTTCATGTTTTTGAAGAAACTGAAGTC  550

seq1  ACAAGACTCTTGTCTTGTTTTCTTGGAGTTTTCTTACAAGCACTCAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTCTTGTCTTGTTTTCTTGGAGTTTTCTTACAAGCACTCAGAAT  600

seq1  CCTCACACAGCTCCATTCTTGGACTGTGTTCCAATATCCTATGACAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACAGCTCCATTCTTGGACTGTGTTCCAATATCCTATGACAGATT  650

seq1  TCCTTTTCTTTTGTCTCCCCTTCTCCTCTTTTCTGTATAGTCACTCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTTTGTCTCCCCTTCTCCTCTTTTCTGTATAGTCACTCTTGC  700

seq1  AGTTTTCTAGAAATGTTTTCATTTAAAACATTCAAAGTCTCCTTTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTAGAAATGTTTTCATTTAAAACATTCAAAGTCTCCTTTTATAA  750

seq1  CACACATAGTTAAGTACTTTGGAATGGAACACAAAGCTTCCCAGTGCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAGTTAAGTACTTTGGAATGGAACACAAAGCTTCCCAGTGCTAA  800

seq1  TATTTGTGCTAAA-TTTTATCTGTACTTTTAATAACATTTCAACATGGAT  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGCTAAATTTTTATCTGTACTTTTAATAACATTTCAACATGGAT  850

seq1  CCTATCTTAGTCTTCATGTGAGACTAAAAACTAATTTTAAAATTAAATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTAGTCTTCATGTGAGACTAAAAACTAATTTTAAAATTAAATAA  900

seq1  AACATTGTTTATGTTTTATAATGTCTTCCCATGGGAAGAACTCTTAGAAA  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACATTGTTTATG-TTTATAATGTCTTCCCATGGGAAGAACTCTTAGAAA  949

seq1  TTGATAGCAATAGGTACAAATGTAGACTCTCACTGTAACAACACTTCTGC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGATAGCAATAGGTAC-AATGTAGACTCTCACTGTAACAACACTTCTGC  998

seq1  TTTTTAACCTGAATGTCTTCACTGACATCCAA-GCCTGTATGTATCTTCA  1048
      ||||||||||||||||| |||||||||||||| || |||||||||| |||
seq2  TTTTTAACCTGAATGTCCTCACTGACATCCAAGGCTTGTATGTATC-TCA  1047

seq1  CTGGCATCTACTCATACAGCAGTAGTTG-CTTACAGATGACCATGGCTTT  1097
      |||||||||||||||||||||||||||| ||||| ||||| |||||||||
seq2  CTGGCATCTACTCATACAGCAGTAGTTGTCTTACGGATGA-CATGGCTTT  1096

seq1  AG-ATATGGTTTTGAAGGAAATTGAAAAATATGGGT  1132
      || ||||||  |||||||||  || |||||||||||
seq2  AGAATATGG--TTGAAGGAA--TG-AAAATATGGGT  1127