BAC Information

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BAC

Clone NameB6Ng01-068D20
Chromosome1 (Build37)
Map Location 152,473,019 - 152,561,221
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a, Ptgs2, LOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534
Downstream geneEG545370, LOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068D20.bB6Ng01-068D20.g
ACCDH886888DH886889
length7611,137
definitionDH886888|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D20, 5' end.DH886889|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,473,019 - 152,473,798)(152,560,079 - 152,561,221)
sequence
gaattctaaccagtctactggtttatctgagatagccaaaatattctgct
ttaaaaccaaagctatatgctgagagtcaatgtcctattatttcccattg
attaaaaaatacataaattctcttagaacaatatagtttatcttgaggtt
ttgcaggactcctcacagtggaagtgtctctgactcttttgcctgttctt
aggaccaattttctcttactgggttgccttgtcctgccttgagaggaggg
tttgtgcctagtttgcatttttatgctgtgtttggttgatattcctggga
ggtctgctcttttctgcagggaaatggaccagcagtgggtctgtgggaga
gaagagttgagcgaggggactgggggagtagagggagatgaagctatggt
taggatatattgtatgacagaagactaaatacaaagaaaaaaaaaaagga
aaaacaaaaccagaaaacacacactcatgaaatctcaggatgagttgtta
ctcaatctgtctcccagtatgcctgccttacacaagacccattttcaatg
aaaatcatgtatattttcatttagttaagtaagtttcctcagtgctataa
gttgtacaaatgttgaccatggccactgccaaaagtaaattgcactattt
agcacccaacctttcctgcttaattgcgaacattaaaaatagaggagcag
tggatctggaggagaggggaggtaggtcagctcaagaggagagaagggag
ggggaggtggg
gaattctcctaatttgcttctttacatattttcttttatttgagtgagcc
agcaaaaatattttgttccttaaatgttttccataaactaatttcttctg
tccatggttcatcaaataggaacacccactatgaacacatttgcacatat
aaacatgttcctggagaataattaattgcaaagataatatcaaaaagtaa
ccatttctaattggctccttatcctggagaggctgagaacacagagacac
tgctagtcttctagatgcctttaatgtatgaagctttgcatacgtctatc
tctgtcatcacagtgttccctgacagctggctccagcaactcctcgagtt
tcttttcacatttaagagttggagaattgtgtgtgtcctgtagtagtttt
tccttccatgaactgccttccatcctccttacacagtaaaatggtagtat
ttggacaaaaactgagtcaaacagtaaagagtgctgcagtgctttgtcag
tgtactccagaaaaactgaaaactagggtccctgaaagaaattaaattct
tcatcaaatatgaacaaagtacagtggcatatatatatgaaaatgtcaca
atgaaacctattattatatatgttgatgaaaaatatttatctggagtata
ataaaaagcaacaaaggaaaaggtacctaaggaaaatataagtctgtaga
tgtacagtctgaacatgatagcaagcatcagctgtcagaagacacaactt
gggtgcacatcctttgatgatgaaacatcatcaaagagacaggaagcaag
tgggagccatctgagttcacgtgcaaagaaagagacacagggcttagttg
ctgagaaaagctccatggagattgccaaacgagatggaggacatggcgct
atctccttcacacaaatcacaagagagaggtaagctcgagcagagcttaa
aacattccatctgctgcgatagccatttttctggataacagctcatctcc
ccgagcagagactaatgatgagtgggtttgtatgatgaactggaggaagt
ggatgtctagatgctggtgcctggaatctggacaaagctgtgtctccctc
ttggcgcggaggacagcatgtcccattaaaggctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_152473019_152473798
seq2: B6Ng01-068D20.b_43_803

seq1  GAATTCTAACCAGTCTACTGGTTTATCTGAGATAGCCAAAATATTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACCAGTCTACTGGTTTATCTGAGATAGCCAAAATATTCTGCT  50

seq1  TTAAAACCAAAGCTATATGCTGAGAGTCAATGTCCTATTATTTCCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAAAGCTATATGCTGAGAGTCAATGTCCTATTATTTCCCATTG  100

seq1  ATTAAAAAATACATAAATTCTCTTAGAACAATATAGTTTATCTTGAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAATACATAAATTCTCTTAGAACAATATAGTTTATCTTGAGGTT  150

seq1  TTGCAGGACTCCTCACAGTGGAAGTGTCTCTGACTCTTTTGCCTGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGACTCCTCACAGTGGAAGTGTCTCTGACTCTTTTGCCTGTTCTT  200

seq1  AGGACCAATTTTCTCTTACTGGGTTGCCTTGTCCTGCCTTGAGAGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAATTTTCTCTTACTGGGTTGCCTTGTCCTGCCTTGAGAGGAGGG  250

seq1  TTTGTGCCTAGTTTGCATTTTTATGCTGTGTTTGGTTGATATTCCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCCTAGTTTGCATTTTTATGCTGTGTTTGGTTGATATTCCTGGGA  300

seq1  GGTCTGCTCTTTTCTGCAGGGAAATGGACCAGCAGTGGGTCTGTGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGCTCTTTTCTGCAGGGAAATGGACCAGCAGTGGGTCTGTGGGAGA  350

seq1  GAAGAGTTGAGCGAGGGGACTGGGGGAGTAGAGGGAGATGAAGCTATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTGAGCGAGGGGACTGGGGGAGTAGAGGGAGATGAAGCTATGGT  400

seq1  TAGGATATATTGTATGACAGAAGACTAAATACAAAGAAAAAAAAAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATATATTGTATGACAGAAGACTAAATACAAAGAAAAAAAAAAAGGA  450

seq1  AAAACAAAACCAGAAAACACACACTCATGAAATCTCAGGATGAGTTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACCAGAAAACACACACTCATGAAATCTCAGGATGAGTTGTTA  500

seq1  CTCAATCTGTCTCCCAGTATGCCTGCCTTACACAAGACCCATTTTCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCTGTCTCCCAGTATGCCTGCCTTACACAAGACCCATTTTCAATG  550

seq1  AAAATCATGTATATTTTCATTTAGTTAAGTAAGTTTCCTCAGTGCTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATGTATATTTTCATTTAGTTAAGTAAGTTTCCTCAGTGCTATAA  600

seq1  GTTGTACAAATGTTGACCATGGCCACTGCCAAAAGTAAATTGCACTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAAATGTTGACCATGGCCACTGCCAAAAGTAAATTGCACTATTT  650

seq1  AGCACCCAACCTTTCCTGCTTAATTGCGAACATTAAAAATAGAGGAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCAACCTTTCCTGCTTAATTGCGAACATTAAAAATAGAGGAGCAG  700

seq1  TGGATCTGGAGGAGAGGGGAGGTAGGTCAGCTCAAGAGGAGAGAAGGGA-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGATCTGGAGGAGAGGGGAGGTAGGTCAGCTCAAGAGGAGAGAAGGGAG  750

seq1  GGGGAGGTGGGGAGGGAGGGAGGGAGGTGGG  780
      |||||||||||                    
seq2  GGGGAGGTGGG--------------------  761

seq1: chr1_152560079_152561221
seq2: B6Ng01-068D20.g_68_1204 (reverse)

seq1  TTGAGCTTTTAATGGGGACATTGCTGTCCTCAGCGCCAAGA-GGAGACAC  49
      |||||| |||||| |||||| |||||||||| ||||||||| ||||||||
seq2  TTGAGCCTTTAAT-GGGACA-TGCTGTCCTCCGCGCCAAGAGGGAGACAC  48

seq1  AGCTTTTGTCCAGATTCCAGGCACAAGCATCTAGACAACCACTTCCTCCA  99
      ||| |||||||||||||||||||| |||||||||||| ||||||||||||
seq2  AGC-TTTGTCCAGATTCCAGGCACCAGCATCTAGACATCCACTTCCTCCA  97

seq1  GGTTCATCATTACAAACCCACTTCATCATTAGTCTCTGCTCGGGGAGATG  149
       |||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  -GTTCATCA-TACAAACCCAC-TCATCATTAGTCTCTGCTCGGGGAGATG  144

seq1  AGCTGTTATCCAGACAAATGGCTATCGCAGCAGATGGAATGTTTTAAGCT  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCTGTTATCCAGAAAAATGGCTATCGCAGCAGATGGAATGTTTTAAGCT  194

seq1  CTTGCTCGAGCTTACCTCTCTCTTGTGATTTGTGTGAAGGAGATAGCGCC  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGCTCGAGCTTACCTCTCTCTTGTGATTTGTGTGAAGGAGATAGCGCC  243

seq1  ATGTCCTCCATCTCGTTTGGCAATCTCCATGGAGCTTTTCTCAGCAACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCCATCTCGTTTGGCAATCTCCATGGAGCTTTTCTCAGCAACTA  293

seq1  AGCCCTGTGTCTCTTTCTTTGCACGTGAACTCAGATGGCTCCCACTTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGTCTCTTTCTTTGCACGTGAACTCAGATGGCTCCCACTTGCT  343

seq1  TCCTGTCTCTTTGATGATGTTTCATCATCAAAGGATGTGCACCCAAGTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCTTTGATGATGTTTCATCATCAAAGGATGTGCACCCAAGTTG  393

seq1  TGTCTTCTGACAGCTGATGCTTGCTATCATGTTCAGACTGTACATCTACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGACAGCTGATGCTTGCTATCATGTTCAGACTGTACATCTACA  443

seq1  GACTTATATTTTCCTTAGGTACCTTTTCCTTTGTTGCTTTTTATTATACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATATTTTCCTTAGGTACCTTTTCCTTTGTTGCTTTTTATTATACT  493

seq1  CCAGATAAATATTTTTCATCAACATATATAATAATAGGTTTCATTGTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAAATATTTTTCATCAACATATATAATAATAGGTTTCATTGTGAC  543

seq1  ATTTTCATATATATATGCCACTGTACTTTGTTCATATTTGATGAAGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATATATATATGCCACTGTACTTTGTTCATATTTGATGAAGAATT  593

seq1  TAATTTCTTTCAGGGACCCTAGTTTTCAGTTTTTCTGGAGTACACTGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTTTCAGGGACCCTAGTTTTCAGTTTTTCTGGAGTACACTGACA  643

seq1  AAGCACTGCAGCACTCTTTACTGTTTGACTCAGTTTTTGTCCAAATACTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTGCAGCACTCTTTACTGTTTGACTCAGTTTTTGTCCAAATACTA  693

seq1  CCATTTTACTGTGTAAGGAGGATGGAAGGCAGTTCATGGAAGGAAAAACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTACTGTGTAAGGAGGATGGAAGGCAGTTCATGGAAGGAAAAACT  743

seq1  ACTACAGGACACACACAATTCTCCAACTCTTAAATGTGAAAAGAAACTCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGACACACACAATTCTCCAACTCTTAAATGTGAAAAGAAACTCG  793

seq1  AGGAGTTGCTGGAGCCAGCTGTCAGGGAACACTGTGATGACAGAGATAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGCTGGAGCCAGCTGTCAGGGAACACTGTGATGACAGAGATAGA  843

seq1  CGTATGCAAAGCTTCATACATTAAAGGCATCTAGAAGACTAGCAGTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATGCAAAGCTTCATACATTAAAGGCATCTAGAAGACTAGCAGTGTCT  893

seq1  CTGTGTTCTCAGCCTCTCCAGGATAAGGAGCCAATTAGAAATGGTTACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTCAGCCTCTCCAGGATAAGGAGCCAATTAGAAATGGTTACTT  943

seq1  TTTGATATTATCTTTGCAATTAATTATTCTCCAGGAACATGTTTATATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATATTATCTTTGCAATTAATTATTCTCCAGGAACATGTTTATATGT  993

seq1  GCAAATGTGTTCATAGTGGGTGTTCCTATTTGATGAACCATGGACAGAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTGTTCATAGTGGGTGTTCCTATTTGATGAACCATGGACAGAAG  1043

seq1  AAATTAGTTTATGGAAAACATTTAAGGAACAAAATATTTTTGCTGGCTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTTATGGAAAACATTTAAGGAACAAAATATTTTTGCTGGCTCA  1093

seq1  CTCAAATAAAAGAAAATATGTAAAGAAGCAAATTAGGAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATAAAAGAAAATATGTAAAGAAGCAAATTAGGAGAATTC  1137