BAC Information

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BAC

Clone NameB6Ng01-068F09
Chromosome1 (Build37)
Map Location 84,032,119 - 84,053,739
singlet/doubletdoublet
Overlap gene5033414K04Rik
Upstream geneSlc19a3, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068F09.bB6Ng01-068F09.g
ACCDH886953DH886954
length4251,130
definitionDH886953|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F09, 5' end.DH886954|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,053,309 - 84,053,739)(84,032,119 - 84,033,276)
sequence
aggtcttgatagacagcagctctttacaagccctgggagttgtatgtatt
ctgatcactcctctaccaagggatcctcagcccccccgccccccacctca
gcacagttgaccttgctaactgtaccttaactctgagcaagaaagaactt
tgcattgctaattgccctttaattctttggtaaacatatggttcagcaag
aaacctctgtcccatttctgtggctaattgcataatgatcttaaatctgt
gctcctgtctggcatttactgagtgggggtagaaaagtcagtgccttctc
tggactgtcataatttaaagaaatttcctatatgcttgatcataaatacc
ttttcaatatctctctggaaaattaaaacaacctagagagtggggggtga
tagaagaagggagggaaggggaagg
gaattccagcaaaacccttttataataaataacaatgtatgcacagggat
tctgatgcccagttactgagggagggagatgtcactgctttgagctgtac
tggccaggttctttgcctcttcctttccatctctttcatacttccctctt
tccttcctctttcctttctccccttcccttccctcctatctccctctacc
ctcatttctcctctcttgttctattgaaattcaaggacaagagtatgaaa
ctgaagttgggggaacgtcagatccagagaagggccgtttcaatcagact
ctggtaataatccacacccggatgcatctgtgtggcaggcacccatcctt
tctccttcagtcttttttgttccttactgattccgtgaaggacattgctc
cacagccagcttctttgctttattaatgtgcccattctgagagatcacag
cccaggggagacaattttatccactcttcaaaggtattgtcacaggttta
cctttcagaaacaggatggacaattcctgtacataggccaggggtaggga
agctaaatggaaattatttgcaaaatgtttggaaatattcttctctgaaa
taagtccatcacattaaacataaagatcaacaccattaataacattattg
tcacagttaaggggcatccagctatgaaaaacaaattgaaaaagatttct
aaacacaaggaatgccctatgcttgatcaattaaaaaaataaataaaatt
gccctgtttaccaagtttgatttattttacatgtcaatttccatttctta
aaaaaagggaagttcatataaagtgtgaaacgctctggctttattacaca
aacatacttttattaaagagtgaatgcatttttctaaagattaggttaca
tatatcataaagcacaagcatatcttcagagtaagtctcatcatacgact
ccatgcttattgtacatgccttgaactggacccaccagggactacatcac
cctccatactacacatgctcaccataccctactcgacaaattcatggtac
gtggtacacagacaaaatactaacccattgctgtctgaataattagctct
catttaggcttcaagtcccgttgccctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84053309_84053739
seq2: B6Ng01-068F09.b_50_480 (reverse)

seq1  CCTTCCCCTTCCCTCCCTTCTTCTATCACCCCCCACTCTCTAGGTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCTTCCCTCCCTTCTTCTATCACCCCCCACTCTCTAGGTTGTTT  50

seq1  TAATTTTCCAGAGAGATATTGAAAAGGTATTTATGATCAAGCATATAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTCCAGAGAGATATTGAAAAGGTATTTATGATCAAGCATATAGGA  100

seq1  AATTTCTTTAAATTATGACAGTCCAGAGAAGGCACTGACTTTTCTACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTAAATTATGACAGTCCAGAGAAGGCACTGACTTTTCTACCCC  150

seq1  CACTCAGTAAATGCCAGACAGGAGCACAGATTTAAGATCATTATGCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTAAATGCCAGACAGGAGCACAGATTTAAGATCATTATGCAATT  200

seq1  AGCCACAGAAATGGGACAGAGGTTTCTTGCTGAACCATATGTTTACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGAAATGGGACAGAGGTTTCTTGCTGAACCATATGTTTACCAAA  250

seq1  GAATTAAAGGGCAATTAGCAATGCAAAGTTCTTTCTTGCTCAGAGTTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGGGCAATTAGCAATGCAAAGTTCTTTCTTGCTCAGAGTTAAG  300

seq1  GTACAGTTAGCAAGGTCAACTGTGCTGAGGTGGGGGGCGGGGGGGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTAGCAAGGTCAACTGTGCTGAGGTGGGGGGCGGGGGGGCTGAG  350

seq1  GATCCCTTGGTAGAGGAGTGATCAGAATACATACAACTCCCAGGGCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTGGTAGAGGAGTGATCAGAATACATACAACTCCCAGGGCTTGT  400

seq1  AAAGAGCTGCTGTCTATCAAGACCTGAATTC  431
      |||||||||||||||||||||||||||||||
seq2  AAAGAGCTGCTGTCTATCAAGACCTGAATTC  431

seq1: chr1_84032119_84033276
seq2: B6Ng01-068F09.g_67_1196

seq1  GAATTCCAGCAAAACCCTTTTATAATAAATAACAATGTATGCACAGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAAAACCCTTTTATAATAAATAACAATGTATGCACAGGGAT  50

seq1  TCTGATGCCCAGTTACTGAGGGAGGGAGATGTCACTGCTTTGAGCTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCCAGTTACTGAGGGAGGGAGATGTCACTGCTTTGAGCTGTAC  100

seq1  TGGCCAGGTTCTTTGCCTCTTCCTTTCCATCTCTTTCATACTTCCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGTTCTTTGCCTCTTCCTTTCCATCTCTTTCATACTTCCCTCTT  150

seq1  TCCTTCCTCTTTCCTTTCTCCCCTTCCCTTCCCTCCTATCTCCCTCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTCTTTCCTTTCTCCCCTTCCCTTCCCTCCTATCTCCCTCTACC  200

seq1  CTCATTTCTCCTCTCTTGTTCTATTGAAATTCAAGGACAAGAGTATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTCCTCTCTTGTTCTATTGAAATTCAAGGACAAGAGTATGAAA  250

seq1  CTGAAGTTGGGGGAACGTCAGATCCAGAGAAGGGCCGTTTCAATCAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTGGGGGAACGTCAGATCCAGAGAAGGGCCGTTTCAATCAGACT  300

seq1  CTGGTAATAATCCACACCCGGATGCATCTGTGTGGCAGGCACCCATCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATAATCCACACCCGGATGCATCTGTGTGGCAGGCACCCATCCTT  350

seq1  TCTCCTTCAGTCTTTTTTGTTCCTTACTGATTCCGTGAAGGACATTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCAGTCTTTTTTGTTCCTTACTGATTCCGTGAAGGACATTGCTC  400

seq1  CACAGCCAGCTTCTTTGCTTTATTAATGTGCCCATTCTGAGAGATCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCAGCTTCTTTGCTTTATTAATGTGCCCATTCTGAGAGATCACAG  450

seq1  CCCAGGGGAGACAATTTTATCCACTCTTCAAAGGTATTGTCACAGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGAGACAATTTTATCCACTCTTCAAAGGTATTGTCACAGGTTTA  500

seq1  CCTTTCAGAAACAGGATGGACAATTCCTGTACATAGGCCAGGGGTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGAAACAGGATGGACAATTCCTGTACATAGGCCAGGGGTAGGGA  550

seq1  AGCTAAATGGAAATTATTTGCAAAATGTTTGGAAATATTCTTCTCTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATGGAAATTATTTGCAAAATGTTTGGAAATATTCTTCTCTGAAA  600

seq1  TAAGTCCATCACATTAAACATAAAGATCAACACCATTAATAACATTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCATCACATTAAACATAAAGATCAACACCATTAATAACATTATTG  650

seq1  TCACAGTTAAGGGGCATCCAGCTATGAAAAACAAATTGAAAAAGATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTAAGGGGCATCCAGCTATGAAAAACAAATTGAAAAAGATTTCT  700

seq1  AAACACAAGGAATGCCCTATGCTTGATCAATTAAAAAAATAAATAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGGAATGCCCTATGCTTGATCAATTAAAAAAATAAATAAAATT  750

seq1  GCCCTGTTTACCAAGTTTGATTTATTTTACATGTCAAATTTCCATTTCTT  800
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCCCTGTTTACCAAGTTTGATTTATTTTACATGTC-AATTTCCATTTCTT  799

seq1  AAAAAAAGGGAAGTTCATATAAAGTGTGAAACGCCCTGGCTTTATTAACA  850
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AAAAAAAGGGAAGTTCATATAAAGTGTGAAACGCTCTGGCTTTATT-ACA  848

seq1  CAAACATACTTTTATTAAAGAGTGAATGCATTTTTCTAAAGAATAGTTTA  900
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  CAAACATACTTTTATTAAAGAGTGAATGCATTTTTCTAAAGATTAGGTTA  898

seq1  CATATATCATAAAGCAACAAGCATATCTTCAGGAGGTAAGTCCTCATCAA  950
      ||||||||||||||| ||||||||||||||||   |||||| |||||| |
seq2  CATATATCATAAAGC-ACAAGCATATCTTCAG--AGTAAGT-CTCATC-A  943

seq1  TACGACTCCATGCTTATTGTACATGCCTTGAAACTGGACCCACACAGGGG  1000
      |||||||||||||||||||||||||||||| |||||||||||| || |||
seq2  TACGACTCCATGCTTATTGTACATGCCTTG-AACTGGACCCAC-CA-GGG  990

seq1  ACTTACATACACACACACATAC-ACACACACTCACACATACACACACACA  1049
      || ||||| ||| | | ||||| |||||  ||||| ||||| |  || | 
seq2  AC-TACAT-CACCCTC-CATACTACACATGCTCAC-CATAC-CCTACTC-  1034

seq1  AACATATACATGGGCACGTGGGTACACAGACCAAAAATACTAACACCATT  1099
       ||| || ||| || |||| |||||||||||  ||||||||||| |||||
seq2  GACAAATTCAT-GGTACGT-GGTACACAGAC--AAAATACTAAC-CCATT  1079

seq1  GCTGTCTGGATTATATTAGCTCTCATTTAAGGCTTCTAAGATACCCCGTT  1149
      |||||||| ||   |||||||||||||| ||||||| |||    ||||||
seq2  GCTGTCTGAAT--AATTAGCTCTCATTT-AGGCTTC-AAG---TCCCGTT  1122

seq1  GCCCCTGAC  1158
      | |||||||
seq2  G-CCCTGAC  1130