BAC Information

Click to search

BAC

Clone NameB6Ng01-069B14
Chromosome1 (Build37)
Map Location 65,296,897 - 65,454,808
singlet/doubletdoublet
Overlap genePip5k3, Pthr2
Upstream geneLOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1
Downstream geneLOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786, Mtap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069B14.bB6Ng01-069B14.g
ACCDH887504DH887505
length1,2261,099
definitionDH887504|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B14, 5' end.DH887505|Mus musculus domesticus DNA, BAC clone: B6Ng01-069B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,453,539 - 65,454,808)(65,296,897 - 65,298,001)
sequence
gaattcacacatgctccaggcacgagcttaggtcgttcacagataggctg
acaggtcccaatctcgaggaacagtccagcctggcaggcagcccacgcat
acagcctcactgcgcatgctcgggcaaggcagtaaacaagtgggtttctc
cggcctctggccgcacctgcctcccgcaagtagtcaagatggtaaccaag
aatagccattacaataatcaatataaatgatcataaacataagccattaa
ctataatagacaatgctattattatccaatactgctattacatggcaagc
agcaatttcatcatggtaacatgggagaggtggtaacaatacacgtaaag
gcttgagtagttactcttgtgcaatttccaataagcaattctatgattca
caaaagtatatttatttaatccaatggcatttattagaatcagtaagtga
gatgccaaacctactccatcttgggaccagcctccatcttaaaagaaaat
gcctgagaacttgacctgcagctgaactcaagtacacccaagtaccagga
aggaccgcatggcttgtccttggctcgtatcccagagttactccctagct
acttcctggcaacagtcaatcaatgattagtctgattgtttcagatgtac
tttggtaccatttgtgatcgttcatggtcttgcttcagagcacccacctt
tcagcttacaatagtcattcaacgcttgccagactggacaactcttcact
tgctcccgtttttctataaaatcctgttccagtgagtgttcagagctgct
tcatcagacggtcctatgagtcagctgtgagtaggacacagtacaaactc
gagtttataataaagaggggctaatgtgattatatcagagttggttcctt
ggtggtctttggggttcacgattgcttccaggcacaacataatggcacag
tattttctgtagctgatgaaaatccttgcacttgagtgtttatgtgtaat
acagaactgaactctgacctacaagactcagtagattagttaaattcaca
tgatgaaataagtgtttctctcatagcataggaatatgattaggatgtgt
ctggtacaattattgcttatacttttttctatttactttataaatgtgag
gatgctggtgcgctggaatcgatgtaaatcgctcctggagggtgcaacag
gaacagtcataaccaggtgactcttg
gaattccaataacataaataatgcctgcttttagttatgatacattgatg
gtcacatgtgaattgatagaatatttaaacttataaagtaaccgtgaagg
gtttttgttcatgaataaataattgtaccttaagtaagaatgaaaaaaat
tcagagagaggaaagagaaatgtttgtattatagaacttacaaagttgat
ccacaaaagctggtttttgaaaccaaaagtctacattttgattataagca
tgtacaatttaggtaggtttccctttgcatagtgttataaaagagtcagc
cgtttatcttactgtttgtagttctaccactgagttatactaccagacca
accttttgtctcattagtgtgttcttcttgtaaatgtcttaaataaattt
atagagacaaacacattttataatgttgtaatatttctagtgatagccat
aaagaccttacatgcctgttaggtttttgttgttatgttaaaaaattatc
tgtcaaaagcagcctaaaggagaaagggttatttggttcatagttgaagg
atacagtccttcatggcagggaaagtcacagaagctagagcttgaagtaa
ctgatgataggaagccagcattcaggggaaagcattgaatgcatgcacgg
atgctgtgctcagcctcactccctttctcattgttgtttgtttttggtaa
tgctgcttccataataaaatatttatctccaacaaaaatttttttcttga
agcttgtgtagttccaggacaactttaagcatgattttctgaaagtgtgt
agggtttttttcccttagaaattaatggactccttaggtaatactaagga
tacagattttaacaagcgtacatgcaaagtctctaatttttggtagttgt
gttacgtacagttaggagcttgtttccatactcagtgactagagggcaga
agagcactgtcttttttttttctccctatgttgattgggattgaaactga
aagaacagttacctctcctaatgcaaatcagttttattccactaatttta
cagtttgtgcattctattaaataatttttaagatactaacgaaatagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65453539_65454808
seq2: B6Ng01-069B14.b_48_1273 (reverse)

seq1  CAAGAAGTCACCTGAGTATATGACTTGCTCCTTGTCTGCAACCCCTCCCA  50
      |||| ||||||||| || |||||| || ||| ||| ||||  |||| |||
seq2  CAAG-AGTCACCTG-GT-TATGAC-TGTTCC-TGT-TGCA--CCCT-CCA  41

seq1  GGAGAGCGGAATTAACATCAAAATACAAACGGCACCAGGCCCATCCTCAA  100
      |||| |    ||| |||||   || | | | |||||||   ||||||| |
seq2  GGAGCG----ATTTACATC--GATTCCAGC-GCACCAG---CATCCTC-A  80

seq1  CATTTAATAAAAAGTAAATTAAGAAAAAGTATATAAGCAATAGATGTGTA  150
      ||||   || |||||||||  |||||||   ||||||||||| || ||||
seq2  CATT---TATAAAGTAAAT--AGAAAAA-AGTATAAGCAATA-AT-TGTA  122

seq1  CCAGACACATCCCTAAATCATATATCCTATGGCTATTGAAGAGGAAAACA  200
      ||||||||||||   |||||||| |||||| |||||    |||  |||||
seq2  CCAGACACATCC--TAATCATAT-TCCTAT-GCTAT----GAGAGAAACA  164

seq1  CTTATTTTCATCATGTGGAATTTAACTAATTCTACTGAGGTCTTTGTAGG  250
      |||| ||||||||||| |||||||||||| |||||||| ||| |||||||
seq2  CTTA-TTTCATCATGT-GAATTTAACTAA-TCTACTGA-GTC-TTGTAGG  209

seq1  TTCAGAGTTCAGTTCTGTATTACACATAAACACTCAAGTTGCAAGGATTT  300
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -TCAGAGTTCAGTTCTGTATTACACATAAACACTCAAG-TGCAAGGATTT  257

seq1  TCATCAGCTACAGAAAATACTGTGCCATTATGTTGTGCCTGGAAGCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCTACAGAAAATACTGTGCCATTATGTTGTGCCTGGAAGCAATC  307

seq1  GTGAACCCCAAAAGACCACCAAGGAACCAACTCTGATATAATCACATTAG  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCCC-AAAGACCACCAAGGAACCAACTCTGATATAATCACATTAG  356

seq1  CCCCTCTTTATTATAAACTCGAGTTTGTACTGTGTCCTACTCACAGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTTATTATAAACTCGAGTTTGTACTGTGTCCTACTCACAGCTGA  406

seq1  CTCATAGGACCGTCTGATGAAGCAGCTCTGAACACTCACTGGAACAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGGACCGTCTGATGAAGCAGCTCTGAACACTCACTGGAACAGGAT  456

seq1  TTTATAGAAAAACGGGAGCAAGTGAAGAGTTGTCCAGTCTGGCAAGCGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGAAAAACGGGAGCAAGTGAAGAGTTGTCCAGTCTGGCAAGCGTT  506

seq1  GAATGACTATTGTAAGCTGAAAGGTGGGTGCTCTGAAGCAAGACCATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGACTATTGTAAGCTGAAAGGTGGGTGCTCTGAAGCAAGACCATGAA  556

seq1  CGATCACAAATGGTACCAAAGTACATCTGAAACAATCAGACTAATCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCACAAATGGTACCAAAGTACATCTGAAACAATCAGACTAATCATTG  606

seq1  ATTGACTGTTGCCAGGAAGTAGCTAGGGAGTAACTCTGGGATACGAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGTTGCCAGGAAGTAGCTAGGGAGTAACTCTGGGATACGAGCCA  656

seq1  AGGACAAGCCATGCGGTCCTTCCTGGTACTTGGGTGTACTTGAGTTCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGCCATGCGGTCCTTCCTGGTACTTGGGTGTACTTGAGTTCAGC  706

seq1  TGCAGGTCAAGTTCTCAGGCATTTTCTTTTAAGATGGAGGCTGGTCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCAAGTTCTCAGGCATTTTCTTTTAAGATGGAGGCTGGTCCCAA  756

seq1  GATGGAGTAGGTTTGGCATCTCACTTACTGATTCTAATAAATGCCATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGTAGGTTTGGCATCTCACTTACTGATTCTAATAAATGCCATTGG  806

seq1  ATTAAATAAATATACTTTTGTGAATCATAGAATTGCTTATTGGAAATTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAAATATACTTTTGTGAATCATAGAATTGCTTATTGGAAATTGC  856

seq1  ACAAGAGTAACTACTCAAGCCTTTACGTGTATTGTTACCACCTCTCCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTAACTACTCAAGCCTTTACGTGTATTGTTACCACCTCTCCCAT  906

seq1  GTTACCATGATGAAATTGCTGCTTGCCATGTAATAGCAGTATTGGATAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATGATGAAATTGCTGCTTGCCATGTAATAGCAGTATTGGATAAT  956

seq1  AATAGCATTGTCTATTATAGTTAATGGCTTATGTTTATGATCATTTATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTGTCTATTATAGTTAATGGCTTATGTTTATGATCATTTATAT  1006

seq1  TGATTATTGTAATGGCTATTCTTGGTTACCATCTTGACTACTTGCGGGAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTGTAATGGCTATTCTTGGTTACCATCTTGACTACTTGCGGGAG  1056

seq1  GCAGGTGCGGCCAGAGGCCGGAGAAACCCACTTGTTTACTGCCTTGCCCG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGCGGCCAGAGGCCGGAGAAACCCACTTGTTTACTGCCTTGCCCG  1106

seq1  AGCATGCGCAGTGAGGCTGTATGCGTGGGCTGCCTGCCAGGCTGGACTGT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCGCAGTGAGGCTGTATGCGTGGGCTGCCTGCCAGGCTGGACTGT  1156

seq1  TCCTCGAGATTGGGACCTGTCAGCCTATCTGTGAACGACCTAAGCTCGTG  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGAGATTGGGACCTGTCAGCCTATCTGTGAACGACCTAAGCTCGTG  1206

seq1  CCTGGAGCATGTGTGAATTC  1270
      ||||||||||||||||||||
seq2  CCTGGAGCATGTGTGAATTC  1226

seq1: chr1_65296897_65298001
seq2: B6Ng01-069B14.g_67_1165

seq1  GAATTCCAATAACATAAATAATGCCTGCTTTTAGTTATGATACATTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATAACATAAATAATGCCTGCTTTTAGTTATGATACATTGATG  50

seq1  GTCACATGTGAATTGATAGAATATTTAAACTTATAAAGTAACCGTGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGTGAATTGATAGAATATTTAAACTTATAAAGTAACCGTGAAGG  100

seq1  GTTTTTGTTCATGAATAAATAATTGTACCTTAAGTAAGAATGAAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTCATGAATAAATAATTGTACCTTAAGTAAGAATGAAAAAAAT  150

seq1  TCAGAGAGAGGAAAGAGAAATGTTTGTATTATAGAACTTACAAAGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGAGGAAAGAGAAATGTTTGTATTATAGAACTTACAAAGTTGAT  200

seq1  CCACAAAAGCTGGTTTTTGAAACCAAAAGTCTACATTTTGATTATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAAGCTGGTTTTTGAAACCAAAAGTCTACATTTTGATTATAAGCA  250

seq1  TGTACAATTTAGGTAGGTTTCCCTTTGCATAGTGTTATAAAAGAGTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATTTAGGTAGGTTTCCCTTTGCATAGTGTTATAAAAGAGTCAGC  300

seq1  CGTTTATCTTACTGTTTGTAGTTCTACCACTGAGTTATACTACCAGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTATCTTACTGTTTGTAGTTCTACCACTGAGTTATACTACCAGACCA  350

seq1  ACCTTTTGTCTCATTAGTGTGTTCTTCTTGTAAATGTCTTAAATAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTGTCTCATTAGTGTGTTCTTCTTGTAAATGTCTTAAATAAATTT  400

seq1  ATAGAGACAAACACATTTTATAATGTTGTAATATTTCTAGTGATAGCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGACAAACACATTTTATAATGTTGTAATATTTCTAGTGATAGCCAT  450

seq1  AAAGACCTTACATGCCTGTTAGGTTTTTGTTGTTATGTTAAAAAATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTTACATGCCTGTTAGGTTTTTGTTGTTATGTTAAAAAATTATC  500

seq1  TGTCAAAAGCAGCCTAAAGGAGAAAGGGTTATTTGGTTCATAGTTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAGCAGCCTAAAGGAGAAAGGGTTATTTGGTTCATAGTTGAAGG  550

seq1  ATACAGTCCTTCATGGCAGGGAAAGTCACAGAAGCTAGAGCTTGAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCCTTCATGGCAGGGAAAGTCACAGAAGCTAGAGCTTGAAGTAA  600

seq1  CTGATGATAGGAAGCCAGCATTCAGGGGAAAGCATTGAATGCATGCACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATAGGAAGCCAGCATTCAGGGGAAAGCATTGAATGCATGCACGG  650

seq1  ATGCTGTGCTCAGCCTCACTCCCTTTCTCATTGTTGTTTGTTTTTGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTGCTCAGCCTCACTCCCTTTCTCATTGTTGTTTGTTTTTGGTAA  700

seq1  TGCTGCTTCCATAATAAAATATTTATCTCCAACAAAAATTTTTTTCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTCCATAATAAAATATTTATCTCCAACAAAAATTTTTTTCTTGA  750

seq1  AGCTTGTGTAGTTCCAGGACAACTTTAAGCATGATTTTCTGAAAGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGTAGTTCCAGGACAACTTTAAGCATGATTTTCTGAAAGTGTGT  800

seq1  AGGGTTTTTTTCCCTTAGAAATTAATGGACTCCTTAGGTAATACTAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTTTCCCTTAGAAATTAATGGACTCCTTAGGTAATACTAAGGA  850

seq1  TACAGATTTTAACAAGCGTACATGCAAAGTCTCTAATTTTGGTTAGTTGT  900
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  TACAGATTTTAACAAGCGTACATGCAAAGTCTCTAATTTTTGGTAGTTGT  900

seq1  GTTACGTACAGTTAGGAGCTGTTTTCCATACTCAGTGACTAGAGGGCAGA  950
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GTTACGTACAGTTAGGAGCTTGTTTCCATACTCAGTGACTAGAGGGCAGA  950

seq1  AGAGCACTGTCTTTTTTTTTTCTCCCCAATGTTGATTGGGATTGAAACTG  1000
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  AGAGCACTGTCTTTTTTTTTTCT-CCCTATGTTGATTGGGATTGAAACTG  999

seq1  AAAG-ACAGTTTTACCTCTTCCTAATGCAAATCAGTTTTATTCCACTTAT  1049
      |||| ||||  ||||||| |||||||||||||||||||||||||||| ||
seq2  AAAGAACAG--TTACCTC-TCCTAATGCAAATCAGTTTTATTCCACTAAT  1046

seq1  TTTACAGTTTGTGCATTCTCATTAAATAATTTTTTAAAGATACTAACGAA  1099
      ||||||||||||||||||| ||||||||||||||  ||||||||||||||
seq2  TTTACAGTTTGTGCATTCT-ATTAAATAATTTTT--AAGATACTAACGAA  1093

seq1  ATAGGA  1105
      ||||||
seq2  ATAGGA  1099