BAC Information

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BAC

Clone NameB6Ng01-069C05
Chromosome1 (Build37)
Map Location 92,684,803 - 92,819,213
singlet/doubletdoublet
Overlap geneCol6a3, Mlph
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7, Cops8
Downstream genePrlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C05.bB6Ng01-069C05.g
ACCDH887532DH887533
length1,127550
definitionDH887532|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C05, 5' end.DH887533|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,818,071 - 92,819,213)(92,684,803 - 92,685,358)
sequence
gaattctggggctcaatgagctgtgattcccactcttgagacctccacat
cttcatccccagagccagtgtgtctaacccgttcgttctcccagcttgcc
tttagttaccttcctttgctcagagtctctgcctcacttctccatacgcc
gacccaacccacaaaagacacagagggaagagaacaggcaccagacaggc
caatcgcctttccttgtggggcagagggaggtgtaagcaatgaggtaaac
caaggtagatcttggttcgggagttggggagagtgaggtgcactagctgg
gctcatccaggaagaggggtgctcctctaatcactaaacaggatggtaac
aaacctctgcctgaatccctgcagagccaaacctcattcaccaagtaaca
ctgttagcttttctctcttcaaggtggggcctcaggaccacatggctcat
gagacaactcccagaagtggagttaagtccaaaggcgctcttcagagaac
agaaaacctcattccataacgaggaagccaaagcttgaaagggaagccac
ttcccagatcacggcatcccatccactctggccacacacccacctatgac
accagaggtgacagccgcttgggacatcagagggcctgaactccagccag
acacttactggagtctttcttcctctcgcctcctgaggtcaaagtcccgc
tgaaccactgcccacacgtgctcagcctcctcgtctgtgagcgtggaaag
gtccaaccttttccccatctcggcgcctcatccaggccacacctagaaag
tcacagggccacaggcaatcaactccaggaagcctccaggacaccaaata
agtcacagagtatggggcagatcagcaaaaccacccacagatatgtactg
ggccaaatagtttttttaaacctatgaataccagtctgggggtagggcca
tttaataaattttgcacagttaaatgaatgagtagatatgtaagttagtt
cttgctcccaggtatgcatacagcatctcactctctactgtaagatgagt
actcatcacattggctcaaaaagagaaaatcgtgtctaaccactcactct
tgaacatggtattcgagactggctcta
cttgttccccaatcaggcctgggggaccaatgggaccaggtgggccctgg
ggaggaaaaggtcatgtcacgggtgagtgcagttgatctgagtctcagta
accagagtggtaacaacccaaatgccaagtaaccagtgagtgaaaaaggc
tgctctttatccatgtatggactattactcagccagtgagaggaacacca
ctatgtcagctgccagaacatgtcctgaattcagggaactatactatgtg
aaagaagccaaacataaaatccacctatcaagtgataccatttatatgaa
atgtccagaacaggcaaattcacaaagacagggagaccagtgtgggccag
aggtagggagcatcagggttgagggttaccggggtggggaggggcagtaa
agaggaggggcagtagggattagtggcagctggggtggggcaataggaat
ggagggcaatagggatggagggcactaggggttaaatgtgacagacgtta
gggcgacaggtgtggggtctataagggtgagggaagatgtggaaatggca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92818071_92819213
seq2: B6Ng01-069C05.b_46_1172 (reverse)

seq1  TAGAGCCAGTCTCTGAAATACCCTTGTTCTATGAGCTGGGGTGGGTTTAG  50
      |||||||||||||   |||| || ||||| | |||   | ||||  ||||
seq2  TAGAGCCAGTCTC--GAATA-CCATGTTC-AAGAG--TGAGTGG--TTAG  42

seq1  ACACGATTTTCTCTTTTATGAGCAAATGTGATGAGGTACTCATCTTACAG  100
      ||||||||||||||||| ||||| |||||||||| |||||||||||||||
seq2  ACACGATTTTCTCTTTT-TGAGCCAATGTGATGA-GTACTCATCTTACAG  90

seq1  TAGAAGAGTGAGGATGGCTGTATGCATACCCTGGGGGCAAGAACTAACTT  150
      ||| ||||||| ||| |||||||||||| |||||| ||||||||||||||
seq2  TAG-AGAGTGA-GAT-GCTGTATGCATA-CCTGGGAGCAAGAACTAACTT  136

seq1  ACATATCTACCTCCATTCATTTAACTGTGCAAAATTTATTAAATGGCCCT  200
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  ACATATCTAC--TCATTCATTTAACTGTGCAAAATTTATTAAATGGCCCT  184

seq1  ACCCCCAGACTGGTATTCATAGGTTTAAAAAAACTATTTGGCCCAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAGACTGGTATTCATAGGTTTAAAAAAACTATTTGGCCCAGTACA  234

seq1  TATCTGTGGGTGGTTTTGCTGATCTGCCCCATACTCTGTGACTTATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGGGTGGTTTTGCTGATCTGCCCCATACTCTGTGACTTATTTGG  284

seq1  TGTCCTGGAGGCTTCCTGGAGTTGATTGCCTGTGGCCCTGTGACTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAGGCTTCCTGGAGTTGATTGCCTGTGGCCCTGTGACTTTCTA  334

seq1  GGTGTGGCCTGGATGAGGCGCCGAGATGGGGAAAAGGTTGGACCTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCCTGGATGAGGCGCCGAGATGGGGAAAAGGTTGGACCTTTCCA  384

seq1  CGCTCACAGACGAGGAGGCTGAGCACGTGTGGGCAGTGGTTCAGCGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACAGACGAGGAGGCTGAGCACGTGTGGGCAGTGGTTCAGCGGGAC  434

seq1  TTTGACCTCAGGAGGCGAGAGGAAGAAAGACTCCAGTAAGTGTCTGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTCAGGAGGCGAGAGGAAGAAAGACTCCAGTAAGTGTCTGGCTG  484

seq1  GAGTTCAGGCCCTCTGATGTCCCAAGCGGCTGTCACCTCTGGTGTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGGCCCTCTGATGTCCCAAGCGGCTGTCACCTCTGGTGTCATAG  534

seq1  GTGGGTGTGTGGCCAGAGTGGATGGGATGCCGTGATCTGGGAAGTGGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGTGTGGCCAGAGTGGATGGGATGCCGTGATCTGGGAAGTGGCTT  584

seq1  CCCTTTCAAGCTTTGGCTTCCTCGTTATGGAATGAGGTTTTCTGTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCAAGCTTTGGCTTCCTCGTTATGGAATGAGGTTTTCTGTTCTCT  634

seq1  GAAGAGCGCCTTTGGACTTAACTCCACTTCTGGGAGTTGTCTCATGAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCGCCTTTGGACTTAACTCCACTTCTGGGAGTTGTCTCATGAGCC  684

seq1  ATGTGGTCCTGAGGCCCCACCTTGAAGAGAGAAAAGCTAACAGTGTTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCCTGAGGCCCCACCTTGAAGAGAGAAAAGCTAACAGTGTTACT  734

seq1  TGGTGAATGAGGTTTGGCTCTGCAGGGATTCAGGCAGAGGTTTGTTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAATGAGGTTTGGCTCTGCAGGGATTCAGGCAGAGGTTTGTTACCA  784

seq1  TCCTGTTTAGTGATTAGAGGAGCACCCCTCTTCCTGGATGAGCCCAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTAGTGATTAGAGGAGCACCCCTCTTCCTGGATGAGCCCAGCTA  834

seq1  GTGCACCTCACTCTCCCCAACTCCCGAACCAAGATCTACCTTGGTTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCTCACTCTCCCCAACTCCCGAACCAAGATCTACCTTGGTTTACC  884

seq1  TCATTGCTTACACCTCCCTCTGCCCCACAAGGAAAGGCGATTGGCCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTACACCTCCCTCTGCCCCACAAGGAAAGGCGATTGGCCTGTC  934

seq1  TGGTGCCTGTTCTCTTCCCTCTGTGTCTTTTGTGGGTTGGGTCGGCGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCTGTTCTCTTCCCTCTGTGTCTTTTGTGGGTTGGGTCGGCGTAT  984

seq1  GGAGAAGTGAGGCAGAGACTCTGAGCAAAGGAAGGTAACTAAAGGCAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGTGAGGCAGAGACTCTGAGCAAAGGAAGGTAACTAAAGGCAAGC  1034

seq1  TGGGAGAACGAACGGGTTAGACACACTGGCTCTGGGGATGAAGATGTGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAACGAACGGGTTAGACACACTGGCTCTGGGGATGAAGATGTGGA  1084

seq1  GGTCTCAAGAGTGGGAATCACAGCTCATTGAGCCCCAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAAGAGTGGGAATCACAGCTCATTGAGCCCCAGAATTC  1127

seq1: chr1_92684803_92685358
seq2: B6Ng01-069C05.g_67_622

seq1  GAATTCCTTGTTCCCCAATCAGGCCTGGGGGACCAATGGGACCAGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTCCCCAATCAGGCCTGGGGGACCAATGGGACCAGGTGGG  50

seq1  CCCTGGGGAGGAAAAGGTCATGTCACGGGTGAGTGCAGTTGATCTGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGAGGAAAAGGTCATGTCACGGGTGAGTGCAGTTGATCTGAGTC  100

seq1  TCAGTAACCAGAGTGGTAACAACCCAAATGCCAAGTAACCAGTGAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAACCAGAGTGGTAACAACCCAAATGCCAAGTAACCAGTGAGTGAA  150

seq1  AAAGGCTGCTCTTTATCCATGTATGGACTATTACTCAGCCAGTGAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGCTCTTTATCCATGTATGGACTATTACTCAGCCAGTGAGAGGA  200

seq1  ACACCACTATGTCAGCTGCCAGAACATGTCCTGAATTCAGGGAACTATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACTATGTCAGCTGCCAGAACATGTCCTGAATTCAGGGAACTATAC  250

seq1  TATGTGAAAGAAGCCAAACATAAAATCCACCTATCAAGTGATACCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAAGAAGCCAAACATAAAATCCACCTATCAAGTGATACCATTTA  300

seq1  TATGAAATGTCCAGAACAGGCAAATTCACAAAGACAGGGAGACCAGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATGTCCAGAACAGGCAAATTCACAAAGACAGGGAGACCAGTGTG  350

seq1  GGCCAGAGGTAGGGAGCATCAGGGTTGAGGGTTACCGGGGTGGGGAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGGTAGGGAGCATCAGGGTTGAGGGTTACCGGGGTGGGGAGGGG  400

seq1  CAGTAAAGAGGAGGGGCAGTAGGGATTAGTGGCAGCTGGGGTGGGGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAAGAGGAGGGGCAGTAGGGATTAGTGGCAGCTGGGGTGGGGCAAT  450

seq1  AGGAATGGAGGGCAATAGGGATGGAGGGCACTAGGGGTTAAATGTGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGAGGGCAATAGGGATGGAGGGCACTAGGGGTTAAATGTGACAG  500

seq1  ACGTTAGGGCGACAGGTGTGGGGTCTATAAGGGTGAGGGAAGATGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAGGGCGACAGGTGTGGGGTCTATAAGGGTGAGGGAAGATGTGGAA  550

seq1  ATGGCA  556
      ||||||
seq2  ATGGCA  556