BAC Information

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BAC

Clone NameB6Ng01-069I22
Chromosome14 (Build37)1 (Build37)
Map Location 44,662,710 - 44,663,86961,720,313 - 61,720,870
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1
Downstream geneEar2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069I22.bB6Ng01-069I22.g
ACCDH887829DH887830
length1,154935
definitionDH887829|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I22, 5' end.DH887830|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,662,710 - 44,663,869)(61,720,313 - 61,720,870)
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagattctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaagctttggagtttcat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttgccctgtgcccatatcttcaaggcttttccccact
ttttcctctgtaagtttcagtcaacacattttctaatgtggatctctttc
cctgaggacaaactcttctgacacaaaagactccatagacacagcctttg
atgcttaccaacttattggtgttcaacaactctgtcttgaggaagactcc
cctgagcagaggaaggtagatgaacaggtcaaaccccggtaccctgacca
attacagggctgagggaacctgataactcctcacatctaaatctcatcca
gggaagcctgggtccctttgaagtgaagggtaatagaaacaatctgctta
taggtcctgagcctctcacttaaaccttggtttcattttcagaaatcttt
cctcttgagccaaaagtacaaaggaaggtgatatgttactcctgaagcca
tctgtaaatttacaaagaggtttgtttgcttgcttttgctttctactctg
gcatggaacttagttttattgactaagactggccttgaactcaaggatct
acctgctttttgcctcctgagttctgggattaaatgtttgagcacaattc
taagaagcggcacagtgtccacactttggtcttccttcttcttgagttca
tgggtttagcaaattgtatctatatctcgggtatcctaagtttctgggct
aacatccacttatcagtgagaacatattgtatgagtccctttgtgattgt
gttacctcatcagatgatgccctcctggcccatccatttgcctaggaatt
tcatggaattcattctttttaatgttgaggtaagactcccataggtaaaa
taccacattttcggtatccattcctccggtgaagggcatcggttctttcc
agct
gaattcctgatctttccaagacttttatcctgagtgggtgttggattttg
tcaaattctttctctgcgtctaaggagatgatcatgtggtttttgtctat
gagtttgtttatataatggattacgttgatggatttctgtatattatacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgtt
ttaatgtgttcttggaattgtttagcgagaattttattgagtatttttgc
atcgatagtcataagagaaattggtctgaagttctctatctttgttggat
ctttctatggtttaggtatcagagtaattgtggtttcataaaatgagttg
ggtagagcaccttctaattgtattttgtggaatagtttgtgaagaactgg
aattagatcttctttgaagatccgatagaactctgcaataaacccattgg
gtcctgggctttttttggttgggagactattcatgactgcttctatttat
ttagaggatatgggactgtttagattgctaacttgatcctgatttaactt
tggtacctggtatttgtctagcaatttgtcgatttcgtccaggttttcca
tttttgttgagtatagccttttgtagaaggatctgatggtgtttttggat
ttcttcaggatctgttgttatgtctcccctttttcatttctgatttttaa
tttaggctgctgtccctgtgctctctagtgagtctggctaagggtttatc
tatcttgttgattttcttaaagaaccagctcctcgtttgattgattcttt
gaatatttcttcttgatccacttggttgatttcgcccctgagtttggtta
ttcctgctgtctactccacttgaggtgaattggcttcctttttttctaga
gcttttagtgtgctgtcagctgttatgtgtgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44662710_44663869
seq2: B6Ng01-069I22.b_49_1202

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC  100

seq1  TATCTGATTTAGGATAGGTAAAGATTCTTTCCCAATCTGTTGGTGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAGGATAGGTAAAGATTCTTTCCCAATCTGTTGGTGGTCTT  150

seq1  TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCAT  200

seq1  GAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC  250

seq1  TGTTCAGGAATTTTTGCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAATTTTTGCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT  300

seq1  TTTTCCTCTGTAAGTTTCAGTCAACACATTTTCTAATGTGGATCTCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTGTAAGTTTCAGTCAACACATTTTCTAATGTGGATCTCTTTC  350

seq1  CCTGAGGACAAACTCTTCTGACACAAAAGACTCCATAGACACAGCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGACAAACTCTTCTGACACAAAAGACTCCATAGACACAGCCTTTG  400

seq1  ATGCTTACCAACTTATTGGTGTTCAACAACTCTGTCTTGAGGAAGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTACCAACTTATTGGTGTTCAACAACTCTGTCTTGAGGAAGACTCC  450

seq1  CCTGAGCAGAGGAAGGTAGATGAACAGGTCAAACCCCGGTACCCTGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCAGAGGAAGGTAGATGAACAGGTCAAACCCCGGTACCCTGACCA  500

seq1  ATTACAGGGCTGAGGGAACCTGATAACTCCTCACATCTAAATCTCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGGGCTGAGGGAACCTGATAACTCCTCACATCTAAATCTCATCCA  550

seq1  GGGAAGCCTGGGTCCCTTTGAAGTGAAGGGTAATAGAAACAATCTGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCTGGGTCCCTTTGAAGTGAAGGGTAATAGAAACAATCTGCTTA  600

seq1  TAGGTCCTGAGCCTCTCACTTAAACCTTGGTTTCATTTTCAGAAATCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCTGAGCCTCTCACTTAAACCTTGGTTTCATTTTCAGAAATCTTT  650

seq1  CCTCTTGAGCCAAAAGTACAAAGGAAGGTGATATGTTACTCCTGAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGCCAAAAGTACAAAGGAAGGTGATATGTTACTCCTGAAGCCA  700

seq1  TCTGTAAATTTACAAAGAGGTTTGTTTGCTTGCTTTTGCTTTCTACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAATTTACAAAGAGGTTTGTTTGCTTGCTTTTGCTTTCTACTCTG  750

seq1  GCATGGAACTTAGTTTTATTGACTAAGACTGGCCTTGAACTCAAGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAACTTAGTTTTATTGACTAAGACTGGCCTTGAACTCAAGGATCT  800

seq1  ACCTGCTTTTTGCCTCCTGAGTTCTGGGATTAAATGTTTGAGCACAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTTTTGCCTCCTGAGTTCTGGGATTAAATGTTTGAGCACAATTC  850

seq1  TAAGAAGCGGCACAGTGTCCACACTTTGGTCTTCCTTCTTCTTGAGGTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAGAAGCGGCACAGTGTCCACACTTTGGTCTTCCTTCTTCTTGA-GTTC  899

seq1  ATGGGTTTAGCAAATTGTATCTTATATCTCGGGTATCCTAAGTTTCTGGG  950
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGGGTTTAGCAAATTGTATC-TATATCTCGGGTATCCTAAGTTTCTGGG  948

seq1  CTAACATCCACTTATCAGTGAGAACATATTGTATGAGTTCCTTTGTGATT  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTAACATCCACTTATCAGTGAGAACATATTGTATGAGTCCCTTTGTGATT  998

seq1  GTGTTACCTCATTCAGGATGATGCCCTCCTGGCCCATCCATTTGCCTAGG  1050
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GTGTTACCTCA-TCA-GATGATGCCCTCCTGGCCCATCCATTTGCCTAGG  1046

seq1  AATTTCAT-GAATTCATTCTTTTTAATAGTTGA-GTAGTACTCCATTGTG  1098
      |||||||| |||||||||||||||||| ||||| |||  |||||  |  |
seq2  AATTTCATGGAATTCATTCTTTTTAAT-GTTGAGGTAAGACTCCCATAGG  1095

seq1  TAAATATACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGG  1148
      |||| ||||||||||||| ||||||||||||| | ||| |||||||  ||
seq2  TAAA-ATACCACATTTTCGGTATCCATTCCTCCGGTGAAGGGCATC--GG  1142

seq1  TTCTTTCCAGCT  1160
      ||||||||||||
seq2  TTCTTTCCAGCT  1154

seq1: chr1_61720313_61720870
seq2: B6Ng01-069I22.g_450_1002 (reverse)

seq1  GAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCCCTAGAAAA  50
      |||||| ||||||  |||    ||||| |||| |||||||| ||||||||
seq2  GAGACA-CACATAACAGC----TGACAGCACA-CTAAAAGCTCTAGAAAA  44

seq1  AAAGGAAGCAAATTCACC-CAAGAGGAGTAGACGGCAGGAAATAATCAAA  99
      ||||||||| |||||||| |||| ||||||||| ||||| ||||| ||||
seq2  AAAGGAAGCCAATTCACCTCAAGTGGAGTAGACAGCAGG-AATAACCAAA  93

seq1  CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAAT  149
      |||||||| |||||||||||||||| | ||||||||| ||||||||||||
seq2  CTCAGGGGCGAAATCAACCAAGTGG-ATCAAGAAGAAATATTCAAAGAAT  142

seq1  TAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAAC  199
       || ||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CAATCAAACGAGGAGCTGGTTCTTTAAGAAAATCAACAAGATAGATAAAC  192

seq1  CCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAA  249
      ||||||| |||||||||| || |||||||||||  | ||||| | | |||
seq2  CCTTAGCCAGACTCACTAGAGAGCACAGGGACAGCAGCCTAAATTA-AAA  241

seq1  ATCAGAAATGAAAA--GGGAGACATAACAACAGATCCTGAAGAAATCC-A  296
      ||||||||||||||  |||||||||||||||||||||||||||||||| |
seq2  ATCAGAAATGAAAAAGGGGAGACATAACAACAGATCCTGAAGAAATCCAA  291

seq1  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  346
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAATGGAAA  341

seq1  ACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTG  396
      ||||||||||||| |||||||| || |||| |||||||||||||||||| 
seq2  ACCTGGACGAAATCGACAAATTGCTAGACAAATACCAGGTACCAAAGTTA  391

seq1  AATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAAT  446
      |||||||||||||||  | |||||||||||||||||||  ||||| ||||
seq2  AATCAGGATCAAGTTAGCAATCTAAACAGTCCCATATCCTCTAAATAAAT  441

seq1  AGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATG  496
      ||||||||| || ||||||||||||||||||||||||||||||||  |||
seq2  AGAAGCAGTCATGAATAGTCTCCCAACCAAAAAAAGCCCAGGACCCAATG  491

seq1  GGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATT  546
      |||||| |||||||||||||| || |||||||||||||||||||||| ||
seq2  GGTTTATTGCAGAGTTCTATCGGATCTTCAAAGAAGATCTAATTCCAGTT  541

seq1  CTGCACAAACTA  558
      || |||||||||
seq2  CTTCACAAACTA  553