BAC Information

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BAC

Clone NameB6Ng01-069J03
Chromosome1 (Build37)
Map Location 192,951,744 - 193,157,022
singlet/doubletdoublet
Overlap gene4933417M04Rik, Atf3, Nenf, 2310028N02Rik
Upstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik
Downstream genePpp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069J03.bB6Ng01-069J03.g
ACCDH887837DH887838
length8041,047
definitionDH887837|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J03, 5' end.DH887838|Mus musculus domesticus DNA, BAC clone: B6Ng01-069J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(192,951,744 - 192,952,546)(193,155,970 - 193,157,022)
sequence
gaattcaccaactttcttctaatatgaaatgtagtttgcaatacctgaat
gtaatgaagattctaggtatacataagcctgccctgagacttctaactct
tatccagtagaatactgtaagaaagcatgcaagaccctccacaatattgc
agggacgaatctggggcattctagctatgggaatgccaaggttccaggag
gctaagtttcctcaaaactctttgccttgtgactgcttgcaggcttttag
gcctgccaagcgagtcactactggagtggatgtagcacttaaccacggag
ccacctctccagcccccaaataaaatatctaaaaccataacaacgagctg
gtgagatggctcagctgttaagagcactgactgctcttccagaggtcatg
agttcaaatcccagcaaccacatggtggctcacaaccatccataataaga
aacaaataaaaaacctatgggttggaaacgagtggggctagagcaagagg
gagaagggaaggggaataaataaataaataaataaataaataacaaaaac
aaacaaagggctagctttcatatccattaacccaggagaaaacctggttc
tcacagtgacccttgctgaccctttttgcagctatgagggacaagggtgg
gctgcacagaccctgggcctccttctaagctgttcactaatttctccaca
ctttatgtttttatctgtaatttcagggatactaaatccaaaatccttag
gcctgtgtggcgtcatgtgactttctctctctctctctctctctccctct
ctct
gaattccaagtaacaatcaaggaagcacagtgagaggaagcagacaggca
gttcctcagtgaaaccagaggagcaccggttctaaaggacagactcagtt
attaagaaatgaaagatggccgggcggtggtggcgcacgcctttaatgcc
agcactcgggaggcagaggcagggggatcgctatctctgtgatctctgtg
agtttgaggcctgcctggtgtacagagcgagtcccaggacagctagagct
atgtaacagaggccaggacagctggggactcagagaacagccagggtgca
gaagggaaggtgtaagagatgaagatgccaatgaatgaaaactatgaata
gaggcagcagtgcaaacaaacaggctacaccgagcagagtgagctccaga
cctgaagtcaggtttattgaaataagccagttgtcaatggtgaggagaga
accgcaaagaacgcttgtagcatctaaggaaagccgccgagaaaagatct
gcacggtggaaattacggaggaggacatggaggaaggcccagagaccatt
aaaggacagctaaaagccactgagtaaggtctggacaggcactcacattc
tatttacctcaaagagcttcctctctcaagaaaaacttaggcaagctgcc
cagaggcagagagagagagagacctggaggcagaagtggaagtctaacct
gccatcccagcactggggaggctgaggtagggagtacaagttcaaggcca
acctggctacagggagatcatatctcagaaaaaaaagggatagatggata
aaagaatggagggatggatagacaaaaagaagagagggagaagagaaaga
cgaggggagaggggagagaagatttaaacccaaaagacaaaatgactggc
cggcagatggatggatggacagacaggcagaaccttgaaaggccaaaagg
gactgaattagaaggtgaattcaaatgctagaggaatgcccagccatgac
atcaccctcatgacacagcttctcagaattaagaaatttaaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_192951744_192952546
seq2: B6Ng01-069J03.b_45_848

seq1  GAATTCACCAACTTTCTTCTAATATGAAATGTAGTTTGCAATACCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAACTTTCTTCTAATATGAAATGTAGTTTGCAATACCTGAAT  50

seq1  GTAATGAAGATTCTAGGTATACATAAGCCTGCCCTGAGACTTCTAACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAAGATTCTAGGTATACATAAGCCTGCCCTGAGACTTCTAACTCT  100

seq1  TATCCAGTAGAATACTGTAAGAAAGCATGCAAGACCCTCCACAATATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGTAGAATACTGTAAGAAAGCATGCAAGACCCTCCACAATATTGC  150

seq1  AGGGACGAATCTGGGGCATTCTAGCTATGGGAATGCCAAGGTTCCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACGAATCTGGGGCATTCTAGCTATGGGAATGCCAAGGTTCCAGGAG  200

seq1  GCTAAGTTTCCTCAAAACTCTTTGCCTTGTGACTGCTTGCAGGCTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTTTCCTCAAAACTCTTTGCCTTGTGACTGCTTGCAGGCTTTTAG  250

seq1  GCCTGCCAAGCGAGTCACTACTGGAGTGGATGTAGCACTTAACCACGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCAAGCGAGTCACTACTGGAGTGGATGTAGCACTTAACCACGGAG  300

seq1  CCACCTCTCCAGCCCCCAAATAAAATATCTAAAACCATAACAACGAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCCAGCCCCCAAATAAAATATCTAAAACCATAACAACGAGCTG  350

seq1  GTGAGATGGCTCAGCTGTTAAGAGCACTGACTGCTCTTCCAGAGGTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGATGGCTCAGCTGTTAAGAGCACTGACTGCTCTTCCAGAGGTCATG  400

seq1  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATAAGA  450

seq1  AACAAATAAAAAACCTATGGGTTGGAAACGAGTGGGGCTAGAGCAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATAAAAAACCTATGGGTTGGAAACGAGTGGGGCTAGAGCAAGAGG  500

seq1  GAGAAGGGAAGGGGAATAAATAAATAAATAAATAAATAAATAACAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAAGGGGAATAAATAAATAAATAAATAAATAAATAACAAAAAC  550

seq1  AAACAAAGGGCTAGCTTTCATATCCATTAACCCAGGAGAAAACCTGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGGCTAGCTTTCATATCCATTAACCCAGGAGAAAACCTGGTTC  600

seq1  TCACAGTGACCCTTGCTGACCCTTTTTGCAGCTATGAGGGACAAGGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGACCCTTGCTGACCCTTTTTGCAGCTATGAGGGACAAGGGTGG  650

seq1  GCTGCACAGACCCTGGGCCTCCTTCTAAGCTGTTCACTAATTTCTCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACAGACCCTGGGCCTCCTTCTAAGCTGTTCACTAATTTCTCCACA  700

seq1  CTTTATGTTTTTATCTGTAA-TTCAGGGATACTAAATCCAAAATCCTTAG  749
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTATGTTTTTATCTGTAATTTCAGGGATACTAAATCCAAAATCCTTAG  750

seq1  GCCTGTGTGGCGTCATGTGACTTTCTCTCTCTCTCTCTCTCTCTCCCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGGCGTCATGTGACTTTCTCTCTCTCTCTCTCTCTCTCCCTCT  800

seq1  CTCT  803
      ||||
seq2  CTCT  804

seq1: chr1_193155970_193157022
seq2: B6Ng01-069J03.g_70_1116 (reverse)

seq1  TTTTTTTTAATTTTCTTTATTTCTGAGAAGCTGTGTCACTGAGGGTGATG  50
      |||||||||| |||| ||| |||||||||||||||||| |||||||||||
seq2  TTTTTTTTAAATTTC-TTAATTCTGAGAAGCTGTGTCA-TGAGGGTGATG  48

seq1  TCCTTGGCTGGGCACTTCCTCTAGCATTCTGAATTCACCTCCT-ATTCTG  99
      | | |||||||||| ||||||||||||| ||||||||||| || |||| |
seq2  T-CATGGCTGGGCA-TTCCTCTAGCATT-TGAATTCACCTTCTAATTCAG  95

seq1  TCCCTTTCTGGCCTTCCAAGTGTCTGCCTGTCTGTCCATCCATCCATCTG  149
      ||||||| ||||||| ||||  ||||||||||||||||||||||||||||
seq2  TCCCTTT-TGGCCTTTCAAGGTTCTGCCTGTCTGTCCATCCATCCATCTG  144

seq1  CCTGCCTGTCTTTTTGTCTTTTTGGTTTTAAATTCTTCTCT-CCCTCTCC  198
      || ||| ||| ||||||||||| |||||  || |||||||| ||||||||
seq2  CCGGCCAGTCATTTTGTCTTTTGGGTTT--AAATCTTCTCTCCCCTCTCC  192

seq1  CCTCGTCTTTCTCTTCTCCCTCTCTTCTTTTTGTCTATCCATCCCTCCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCTTTCTCTTCTCCCTCTCTTCTTTTTGTCTATCCATCCCTCCAT  242

seq1  TCTTTTATCCATCTATCCCTTTTTTTTCTGAGATATGATCTCCCTGTAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCCATCTATCCCTTTTTTTTCTGAGATATGATCTCCCTGTAGC  292

seq1  CAGGTTGGCCTTGAACTTGTACTCCCTACCTCAGCCTCCCCAGTGCTGGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGCCTTGAACTTGTACTCCCTACCTCAGCCTCCCCAGTGCTGGG  342

seq1  ATGGCAGGTTAGACCTTCCACTTCTGCCTCCAGGTCTCTCTCTCTCTCTG  398
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGTTAGA-CTTCCACTTCTGCCTCCAGGTCTCTCTCTCTCTCTG  391

seq1  CCTCTGGGCAGCTTGCCTAAG-TTTTCTTGAGAGAGGAAGCTCTTTGAGG  447
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCTCTGGGCAGCTTGCCTAAGTTTTTCTTGAGAGAGGAAGCTCTTTGAGG  441

seq1  TAAATAGAATGTGAGTGCCTGTCCAGACCTTACTCAGTGGCTTTTAGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAATGTGAGTGCCTGTCCAGACCTTACTCAGTGGCTTTTAGCTG  491

seq1  TCCTTTAATGGTCTCTGGGCCTTCCTCCATGTCCTCCTCCGTAATTTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAATGGTCTCTGGGCCTTCCTCCATGTCCTCCTCCGTAATTTCCA  541

seq1  CCGTGCAGATCTTTTCTCGGCGGCTTTCCTTAGATGCTACAAGCGTTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCAGATCTTTTCTCGGCGGCTTTCCTTAGATGCTACAAGCGTTCTT  591

seq1  TGCGGTTCTCTCCTCACCATTGACAACTGGCTTATTTCAATAAACCTGAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTTCTCTCCTCACCATTGACAACTGGCTTATTTCAATAAACCTGAC  641

seq1  TTCAGGTCTGGAGCTCACTCTGCTCGGTGTAGCCTGTTTGTTTGCACTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCTGGAGCTCACTCTGCTCGGTGTAGCCTGTTTGTTTGCACTGC  691

seq1  TGCCTCTATTCATAGTTTTCATTCATTGGCATCTTCATCTCTTACACCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTATTCATAGTTTTCATTCATTGGCATCTTCATCTCTTACACCTT  741

seq1  CCCTTCTGCACCCTGGCTGTTCTCTGAGTCCCCAGCTGTCCTGGCCTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCACCCTGGCTGTTCTCTGAGTCCCCAGCTGTCCTGGCCTCTG  791

seq1  TTACATAGCTCTAGCTGTCCTGGGACTCGCTCTGTACACCAGGCAGGCCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGCTCTAGCTGTCCTGGGACTCGCTCTGTACACCAGGCAGGCCT  841

seq1  CAAACTCACAGAGATCACAGAGATAGCGATCCCCCTGCCTCTGCCTCCCG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCACAGAGATCACAGAGATAGCGATCCCCCTGCCTCTGCCTCCCG  891

seq1  AGTGCTGGCATTAAAGGCGTGCGCCACCACCGCCCGGCCATCTTTCATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGCATTAAAGGCGTGCGCCACCACCGCCCGGCCATCTTTCATTT  941

seq1  CTTAATAACTGAGTCTGTCCTTTAGAACCGGTGCTCCTCTGGTTTCACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAACTGAGTCTGTCCTTTAGAACCGGTGCTCCTCTGGTTTCACTG  991

seq1  AGGAACTGCCTGTCTGCTTCCTCTCACTGTGCTTCCTTGATTGTTACTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGCCTGTCTGCTTCCTCTCACTGTGCTTCCTTGATTGTTACTTG  1041

seq1  GAATTC  1053
      ||||||
seq2  GAATTC  1047