BAC Information

Click to search

BAC

Clone NameB6Ng01-069L21
Chromosome1 (Build37)
Map Location 70,669,406 - 70,832,647
singlet/doubletdoublet
Overlap geneSpag16, A830006F12Rik, LOC100043210
Upstream geneIkzf2
Downstream geneEG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069L21.bB6Ng01-069L21.g
ACCDH887957DH887958
length1,0221,130
definitionDH887957|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L21, 5' end.DH887958|Mus musculus domesticus DNA, BAC clone: B6Ng01-069L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,831,619 - 70,832,647)(70,669,406 - 70,670,557)
sequence
gaattcattaatctgttgccggcacttcttccagcatcattttgggatgg
aatctgatcatctttttgcatttagtcaagctattaccagtcgttaatga
ctttttgatttttttaaggttttgttaattggagttatctgtctctttta
ttagcatacaaaatcaagacttagtcatcagttttcaaaatactaaaaca
tgtaaatgagtacaatttaattggatgtaatttttatactgttcttatga
tttctagattatattgaaaaaaagtcagtttccaaggtagtcagttcctt
gggagggtggacctttcacaagctgcatatttcatttcagttgatgcaaa
aatgacatgaaaattcaaagttctaaaatgtacaaatccaaatgtgatgg
ttactattgaacatcaacatggctggattgagaaacatctagctgatcag
ccactttgatatcttgtgtgtctaatgttctttcctaaaaggattatcta
aggatggaagatttgaatagggtggtatcccacaggctgagggcctgagt
agctgactgctcactagcattgttaggcccccctttcctgacaaccaggt
gtgaactgctttgctctgctacacatttcctgctatggtggactgatacc
tcttaacccatgagtcgaagccagtctttcctcctttctggtgcattggc
taggtacttttcacaatgacgaagtctgactaaccctctagctataggaa
acatataggctaatgtgcaaagtaatagtgaaatattatacattcattaa
catagtaaatatagcagcaatgtgggaaaatattatgagaatatattatc
atttgtctactatgaatagatctgtaacgatattagaagtttgttctgtc
agatatataagtaacagataatgtgttgagagctaatcatggctgtcaat
tgagtgaatctggaatccactgaaatgaaagccactggtactcttgtgat
gaattttcttttttttaaagat
gaattccatcccatataatggttattttgaaaaaaatatgtaattcccgc
tgattgactttaggattagttagtttgcaatatctctcaaagataattaa
atgtatgtgtcttattatttcattttatccctctgggtgatatccatggt
gtctttttcctatccagattttctccaggttcctgcttctataaaaattc
acatgaaaattcacagtgattgaattcatacctagttctaaaataaagtt
cctgatgaacaacaacttgtgaaaattgtattcagggtcatcatcatgtg
gactgaattctttttaacatttagtgctttttgccttgttttatattttt
gaaatctttcttcacctatttttatcctaataacatatttttgttcaact
tcttggagtgatttttgagcattttaaaagaaaatggttactcaaaatat
gtaattgtatgctaataattatttaaattaaatacccttaatagttcatt
attgaaatgtcttaaatacccttaatagttcattattgaaatgtctactt
gcagcattgtacatatgactagactaacaactttgtatttatttgcaact
ttccttgggtttaatagctaacatagtattactactgtatcagcaattta
caattggcaaacacatggttagtttctcctattgcacttctaaaactcag
tatatagtttaatgctgttcaaacgagctttccaggcataaaattattac
tgttccataaataacagtttctacatatttaaatatttttcttttaaatt
agttctatttacatcattatggttgaagctgcctaatgcaaaaatttatg
ggttaaaattagcactaatatcaagttctacttatttatgcaaatatttc
agattacttgagaagccagaaattcacactaagtgctcagctaatcagca
tcttcatattctaaacatgaatgaaatcataaagtccaattgaattttgg
ttcatatttattcaccaggatcagaattactaccctattggaaatatatg
tattagagtactaccattcctcaggttatgtaaaagcgactttccagtga
gactgtgctacttatatccaatggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70831619_70832647
seq2: B6Ng01-069L21.b_48_1069 (reverse)

seq1  ATCTTTTAAAAAAAAGGAAAATTCATCACAAGAGTACCCAGTGGCTTTCA  50
      ||||||  ||||||| |||||||||||||||||||| |||||||||||||
seq2  ATCTTT--AAAAAAAAGAAAATTCATCACAAGAGTA-CCAGTGGCTTTCA  47

seq1  TTTCAGTGGATTCCAGATTCACTCAATTTGACAGCCATGATTAGCTCTCA  100
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TTTCAGTGGATTCCAGATTCACTCAA-TTGACAGCCATGATTAGCTCTC-  95

seq1  AACACATTATCTTGTTACTTATATATCTGACAGAACAAACCTTCTAATAT  150
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AACACATTATC-TGTTACTTATATATCTGACAGAACAAA-CTTCTAATAT  143

seq1  CGTTACAGATCTATTCATAGTAGACAAATGATAATATATTCTCATAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACAGATCTATTCATAGTAGACAAATGATAATATATTCTCATAATAT  193

seq1  TTTCCCACATTGCTGCTATATTTACTATGTTAATGAATGTATAATATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACATTGCTGCTATATTTACTATGTTAATGAATGTATAATATTTC  243

seq1  ACTATTACTTTGCACATTAGCCTATATGTTTCCTATAGCTAGAGGGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACTTTGCACATTAGCCTATATGTTTCCTATAGCTAGAGGGTTAG  293

seq1  TCAGACTTCGTCATTGTGAAAAGTACCTAGCCAATGCACCAGAAAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTCGTCATTGTGAAAAGTACCTAGCCAATGCACCAGAAAGGAGG  343

seq1  AAAGACTGGCTTCGACTCATGGGTTAAGAGGTATCAGTCCACCATAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGGCTTCGACTCATGGGTTAAGAGGTATCAGTCCACCATAGCAG  393

seq1  GAAATGTGTAGCAGAGCAAAGCAGTTCACACCTGGTTGTCAGGAAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGTAGCAGAGCAAAGCAGTTCACACCTGGTTGTCAGGAAAGGGG  443

seq1  GGCCTAACAATGCTAGTGAGCAGTCAGCTACTCAGGCCCTCAGCCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAACAATGCTAGTGAGCAGTCAGCTACTCAGGCCCTCAGCCTGTGG  493

seq1  GATACCACCCTATTCAAATCTTCCATCCTTAGATAATCCTTTTAGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCACCCTATTCAAATCTTCCATCCTTAGATAATCCTTTTAGGAAAG  543

seq1  AACATTAGACACACAAGATATCAAAGTGGCTGATCAGCTAGATGTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGACACACAAGATATCAAAGTGGCTGATCAGCTAGATGTTTCTC  593

seq1  AATCCAGCCATGTTGATGTTCAATAGTAACCATCACATTTGGATTTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCCATGTTGATGTTCAATAGTAACCATCACATTTGGATTTGTAC  643

seq1  ATTTTAGAACTTTGAATTTTCATGTCATTTTTGCATCAACTGAAATGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAACTTTGAATTTTCATGTCATTTTTGCATCAACTGAAATGAAA  693

seq1  TATGCAGCTTGTGAAAGGTCCACCCTCCCAAGGAACTGACTACCTTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCTTGTGAAAGGTCCACCCTCCCAAGGAACTGACTACCTTGGAA  743

seq1  ACTGACTTTTTTTCAATATAATCTAGAAATCATAAGAACAGTATAAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTTTTTTCAATATAATCTAGAAATCATAAGAACAGTATAAAAAT  793

seq1  TACATCCAATTAAATTGTACTCATTTACATGTTTTAGTATTTTGAAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCAATTAAATTGTACTCATTTACATGTTTTAGTATTTTGAAAACT  843

seq1  GATGACTAAGTCTTGATTTTGTATGCTAATAAAAGAGACAGATAACTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTAAGTCTTGATTTTGTATGCTAATAAAAGAGACAGATAACTCCA  893

seq1  ATTAACAAAACCTTAAAAAAATCAAAAAGTCATTAACGACTGGTAATAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAAACCTTAAAAAAATCAAAAAGTCATTAACGACTGGTAATAGC  943

seq1  TTGACTAAATGCAAAAAGATGATCAGATTCCATCCCAAAATGATGCTGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTAAATGCAAAAAGATGATCAGATTCCATCCCAAAATGATGCTGGA  993

seq1  AGAAGTGCCGGCAACAGATTAATGAATTC  1029
      |||||||||||||||||||||||||||||
seq2  AGAAGTGCCGGCAACAGATTAATGAATTC  1022

seq1: chr1_70669406_70670557
seq2: B6Ng01-069L21.g_67_1196

seq1  GAATTCCATCCCATATAATGGTTATTTTGAAAAAAATATGTAATTCCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCATATAATGGTTATTTTGAAAAAAATATGTAATTCCCGC  50

seq1  TGATTGACTTTAGGATTAGTTAGTTTGCAATATCTCTCAAAGATAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACTTTAGGATTAGTTAGTTTGCAATATCTCTCAAAGATAATTAA  100

seq1  ATGTATGTGTCTTATTATTTCATTTTATCCCTCTGGGTGATATCCATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTCTTATTATTTCATTTTATCCCTCTGGGTGATATCCATGGT  150

seq1  GTCTTTTTCCTATCCAGATTTTCTCCAGGTTCCTGCTTCTATAAAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTCCTATCCAGATTTTCTCCAGGTTCCTGCTTCTATAAAAATTC  200

seq1  ACATGAAAATTCACAGTGATTGAATTCATACCTAGTTCTAAAATAAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAAATTCACAGTGATTGAATTCATACCTAGTTCTAAAATAAAGTT  250

seq1  CCTGATGAACAACAACTTGTGAAAATTGTATTCAGGGTCATCATCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAACAACAACTTGTGAAAATTGTATTCAGGGTCATCATCATGTG  300

seq1  GACTGAATTCTTTTTAACATTTAGTGCTTTTTGCCTTGTTTTATATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAATTCTTTTTAACATTTAGTGCTTTTTGCCTTGTTTTATATTTTT  350

seq1  GAAATCTTTCTTCACCTATTTTTATCCTAATAACATATTTTTGTTCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTCTTCACCTATTTTTATCCTAATAACATATTTTTGTTCAACT  400

seq1  TCTTGGAGTGATTTTTGAGCATTTTAAAAGAAAATGGTTACTCAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGTGATTTTTGAGCATTTTAAAAGAAAATGGTTACTCAAAATAT  450

seq1  GTAATTGTATGCTAATAATTATTTAAATTAAATACCCTTAATAGTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGTATGCTAATAATTATTTAAATTAAATACCCTTAATAGTTCATT  500

seq1  ATTGAAATGTCTTAAATACCCTTAATAGTTCATTATTGAAATGTCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGTCTTAAATACCCTTAATAGTTCATTATTGAAATGTCTACTT  550

seq1  GCAGCATTGTACATATGACTAGACTAACAACTTTGTATTTATTTGCAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTGTACATATGACTAGACTAACAACTTTGTATTTATTTGCAACT  600

seq1  TTCCTTGGGTTTAATAGCTAACATAGTATTACTACTGTATCAGCAATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGGTTTAATAGCTAACATAGTATTACTACTGTATCAGCAATTTA  650

seq1  CAATTGGCAAACACATGGTTAGTTTCTCCTATTGCACTTCTAAAACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGCAAACACATGGTTAGTTTCTCCTATTGCACTTCTAAAACTCAG  700

seq1  TATATAGTTTAATGCTGTTCAAACGAGCTTTCCAGGCATAAAATTATTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTTTAATGCTGTTCAAACGAGCTTTCCAGGCATAAAATTATTAC  750

seq1  TGTTCCATAAATAACAGTTTCTACATATTTAAATATTTTTCTTTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATAAATAACAGTTTCTACATATTTAAATATTTTTCTTTTAAATT  800

seq1  AGTTCTATTTACATCATTATGGTTGAAGCTGCCTAATGCAAAAATTTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTATTTACATCATTATGGTTGAAGCTGCCTAATGCAAAAATTTATG  850

seq1  GGTTAAAATTAGCACTAATATCAAGTTCTACTTATTTATGCAAATATTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAATTAGCACTAATATCAAGTTCTACTTATTTATGCAAATATTTC  900

seq1  AAGATTACTTTGAGAAGCCAGAAATTCACACTAAAGTGCTCAGCTAATCA  950
       ||||||| ||||||||||||||||||||||| |||||||||||||||||
seq2  -AGATTAC-TTGAGAAGCCAGAAATTCACACT-AAGTGCTCAGCTAATCA  947

seq1  GCATCTCCATATTCTAAAACATGAATGAAATCATAAAGTCCCATTTTGAA  1000
      |||||| |||||||| ||||||||||||||||||||||||| |  |||||
seq2  GCATCTTCATATTCT-AAACATGAATGAAATCATAAAGTCCAA--TTGAA  994

seq1  TTTTTGGTTTCAATATTTATCAACAAGGATCAGAATTACTTAACACTATT  1050
       ||||||||   ||||||||  || |||||||||||||||  || |||||
seq2  -TTTTGGTT--CATATTTATTCACCAGGATCAGAATTACT--ACCCTATT  1039

seq1  GAATATTATTGTATTTAGGAGTACTACACATTCATCAAGTTTATGTAAAA  1100
      | | ||   ||||||   ||||||||| ||||| || || ||||||||||
seq2  GGAAATATATGTATT--AGAGTACTAC-CATTCCTC-AGGTTATGTAAAA  1085

seq1  AGGCAGAACTTTCCAGTGAAGACGTGGGCTACATTATTATCCAATGG-AG  1149
        |    ||||||||||| |||| || ||||| ||| |||||||||| ||
seq2  GCG----ACTTTCCAGTG-AGAC-TGTGCTAC-TTA-TATCCAATGGAAG  1127

seq1  GGA  1152
      |||
seq2  GGA  1130