BAC Information

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BAC

Clone NameB6Ng01-070D16
Chromosome6 (Build37)1 (Build37)
Map Location 112,945,530 - 112,946,02993,090,039 - 93,091,187
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3, EG666387, EG620161, LOC666397
Downstream geneThumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070D16.bB6Ng01-070D16.g
ACCDH888295DH888296
length2571,134
definitionDH888295|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D16, 5' end.DH888296|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,945,530 - 112,946,029)(93,090,039 - 93,091,187)
sequence
gaattccagaaagacactaatggctggaaatgttttcagtgctcatgggt
taaaataattcatactggggctggagagatagctgagcagttctgctgta
ctggccaagaatgcaagttcagttctcagcatcctatagtggtttcaacc
atccataactccagtttcaggggatccagcgccctcttctggccttcatg
ggcactgcatgcactggatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgt
gaattccctggcagtgagttgggcgtgggaccatccttgtatggtaataa
cagactctggagcatgtatcttgacagtgaggccaaagcagtgaaactga
agccctacgtttaattaaaaataaaaagccaaatagcacaccagagccct
gtccccagcagcatgtggaaccacgtgtggcctggtggcagagctctgca
aatctgagcttgctctcactgcaggcagacatgccaccaggctagtgcca
gccagtctgagactccccacaggcatcactaatcaataggtcgagactgg
atagggtaggataccctgggaggctagccactcaggaagaggttgaagga
ggttgtgtcaggatggtaggcttggcacagagatgcccacaactctgaga
tggggctggtgaggaaaggagctaggtgttggtacacactagagtcctga
gaacaaagctgagacctggggacttttaggaaaagctaaggagtagccgt
cgtgagtggagacctgtccaagggaaaggctgacagatggaaatcgctct
tgggaggcaatccacagccttcagtgagagacctctgctcttgaggggcc
atggaggggctgctggaagttttctgggcccaacctagagccctaggaaa
cacagaggacagcaaggcaccactccccagcaagtacttgaactgcactt
gagctcatgaagcagccagtatatggatgctcaggccacaagagtacagt
gagcacacctggggacctcggagccagcagcgcacacttgaggatcatgt
cagccacagtggaggctggggaaagggtaacaccatctctgtcccaccag
gatcccctgtggaagccttcctgtggtagtcaggaagcctcaaatgtaca
gcaagctccagaagctgggatgagacctcgtgtgagtgtcagggtcctct
ctcattatcccctatactttatggctcctgcacccagacctgccttgtac
tcatatgactcccctttcatgaactccgtgcccagctgttcctcctcagc
tgcccatagctgcagagcagcacacccctccatagacaagaacacaggcc
catcggtgctcaagtggaggggcaagactttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_112945530_112946029
seq2: B6Ng01-070D16.b_103_295 (reverse)

seq1  ACACACACACACACACACACACACCGCCACCACTACCACCACCATCTCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCATCATCATCATGATAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAAAGTCCTTGAAAAGAGAATGCAGGTTTCTAATTCAGATAGGCCAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATTCAGCTTGACTTTGCCATTCTTTCTTTTAAAGATTTTTATTTAAGAT  200
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGTATAAAATTTTATATATGAATTTATACATGTACACACACACACATA  250
                                         ||||||||||||| |
seq2  -----------------------------------ACACACACACACACA  15

seq1  TATATAAAGATTTGTTGTCAAGTTGACAACCAAAATTAGCCAAAGTTATA  300
       | | | | |               |||  || |  || |||        
seq2  CACACACACA--------------CACACACACACATATCCA--------  43

seq1  TATGTAGTCTGTTTGGCTGGCATGTATGTCTGTCACCACATGCATGCAGT  350
                                              ||||||||||
seq2  ---------------------------------------GTGCATGCAGT  54

seq1  GCTCACAGAGTCCTAAAGAGGGCGCAAGAATCCCTGGGAACTGGAGTTAG  400
      || ||   || ||  ||||||||||  | |||||  | ||||||||||| 
seq2  GCCCATGAAGGCCAGAAGAGGGCGC-TGGATCCCCTGAAACTGGAGTTAT  103

seq1  AGATGGTGGTACACTGCCATATGGGTTCTGAAAATTGAACTCACATCCTC  450
       |||||| | | ||  | ||| || | |||| || ||||||  ||| || 
seq2  GGATGGTTG-AAACCACTATA-GGATGCTGAGAACTGAACTTGCATTCTT  151

seq1  TACAAGAGCAATAAAACCTCTTTACCACTGAGCCATCTCTCCAGCCCCAG  500
        | ||  ||  | |        ||  || ||| ||||||||||||||||
seq2  GGCCAGTACAGCAGA--------ACTGCTCAGCTATCTCTCCAGCCCCAG  193

seq1: chr1_93090039_93091187
seq2: B6Ng01-070D16.g_69_1202 (reverse)

seq1  AAAAAAGTCTTTGCCCCCTCACCCTGAGCACCCCGGATGTGGCTGTGTCT  50
      |||||||||||   ||||||  | ||||||||   |||| | ||||||  
seq2  AAAAAAGTCTT--GCCCCTCCACTTGAGCACC---GATGGGCCTGTGTTC  45

seq1  ATGTCTATGGA-GGGTGTGCTGGCTTCCTGCAGCTATGGGCAGCTGGAGG  99
       |||||||||| ||||||||| |||  |||||||||||||||||| ||||
seq2  TTGTCTATGGAGGGGTGTGCT-GCT--CTGCAGCTATGGGCAGCT-GAGG  91

seq1  AGG-ACAGCTTGGGGCACGGAGTTCATGAAAGGGGGAGTCATATGAGGTA  148
      ||| ||||||  ||||||||||||||||||| |||||||||||||| |||
seq2  AGGAACAGCT--GGGCACGGAGTTCATGAAA-GGGGAGTCATATGA-GTA  137

seq1  CAAGGCAGGTCTGGGTGCCAGGAGCCATAAAGTATAGGGGATAAATGGAG  198
      ||||||||||||||||| ||||||||||||||||||||||||||   |||
seq2  CAAGGCAGGTCTGGGTG-CAGGAGCCATAAAGTATAGGGGATAA--TGAG  184

seq1  AGAGGACCCTTGACACTCACACGAGGTCTCATCCCAGCTTCTGGAGCTTG  248
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCC-TGACACTCACACGAGGTCTCATCCCAGCTTCTGGAGCTTG  233

seq1  CTGTACATTTGAGGCTTCCTGACTACCACAGGAAGGCTTCCACAGGGGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTTGAGGCTTCCTGACTACCACAGGAAGGCTTCCACAGGGGAT  283

seq1  CCTGGTGGGACAGAGATGGTGTTACCCTTTCCCCAGCCTCCACTGTGGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGGACAGAGATGGTGTTACCCTTTCCCCAGCCTCCACTGTGGCT  333

seq1  GACATGATCCTCAAGTGTGCGCTGCTGGCTCCGAGGTCCCCAGGTGTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGATCCTCAAGTGTGCGCTGCTGGCTCCGAGGTCCCCAGGTGTGCT  383

seq1  CACTGTACTCTTGTGGCCTGAGCATCCATATACTGGCTGCTTCATGAGCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTACTCTTGTGGCCTGAGCATCCATATACTGGCTGCTTCATGAGCT  433

seq1  CAAGTGCAGTTCAAGTACTTGCTGGGGAGTGGTGCCTTGCTGTCCTCTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGTTCAAGTACTTGCTGGGGAGTGGTGCCTTGCTGTCCTCTGT  483

seq1  GTTTCCTAGGGCTCTAGGTTGGGCCCAGAAAACTTCCAGCAGCCCCTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTAGGGCTCTAGGTTGGGCCCAGAAAACTTCCAGCAGCCCCTCCA  533

seq1  TGGCCCCTCAAGAGCAGAGGTCTCTCACTGAAGGCTGTGGATTGCCTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCAAGAGCAGAGGTCTCTCACTGAAGGCTGTGGATTGCCTCCC  583

seq1  AAGAGCGATTTCCATCTGTCAGCCTTTCCCTTGGACAGGTCTCCACTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGATTTCCATCTGTCAGCCTTTCCCTTGGACAGGTCTCCACTCAC  633

seq1  GACGGCTACTCCTTAGCTTTTCCTAAAAGTCCCCAGGTCTCAGCTTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCTACTCCTTAGCTTTTCCTAAAAGTCCCCAGGTCTCAGCTTTGTT  683

seq1  CTCAGGACTCTAGTGTGTACCAACACCTAGCTCCTTTCCTCACCAGCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGACTCTAGTGTGTACCAACACCTAGCTCCTTTCCTCACCAGCCCC  733

seq1  ATCTCAGAGTTGTGGGCATCTCTGTGCCAAGCCTACCATCCTGACACAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGTTGTGGGCATCTCTGTGCCAAGCCTACCATCCTGACACAAC  783

seq1  CTCCTTCAACCTCTTCCTGAGTGGCTAGCCTCCCAGGGTATCCTACCCTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAACCTCTTCCTGAGTGGCTAGCCTCCCAGGGTATCCTACCCTA  833

seq1  TCCAGTCTCGACCTATTGATTAGTGATGCCTGTGGGGAGTCTCAGACTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTCGACCTATTGATTAGTGATGCCTGTGGGGAGTCTCAGACTGG  883

seq1  CTGGCACTAGCCTGGTGGCATGTCTGCCTGCAGTGAGAGCAAGCTCAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACTAGCCTGGTGGCATGTCTGCCTGCAGTGAGAGCAAGCTCAGAT  933

seq1  TTGCAGAGCTCTGCCACCAGGCCACACGTGGTTCCACATGCTGCTGGGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGCTCTGCCACCAGGCCACACGTGGTTCCACATGCTGCTGGGGA  983

seq1  CAGGGCTCTGGTGTGCTATTTGGCTTTTTATTTTTAATTAAACGTAGGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCTGGTGTGCTATTTGGCTTTTTATTTTTAATTAAACGTAGGGC  1033

seq1  TTCAGTTTCACTGCTTTGGCCTCACTGTCAAGATACATGCTCCAGAGTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCACTGCTTTGGCCTCACTGTCAAGATACATGCTCCAGAGTCT  1083

seq1  GTTATTACCATACAAGGATGGTCCCACGCCCAACTCACTGCCAGGGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTACCATACAAGGATGGTCCCACGCCCAACTCACTGCCAGGGAATT  1133

seq1  C  1149
      |
seq2  C  1134