BAC Information

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BAC

Clone NameB6Ng01-070G04
Chromosome1 (Build37)
Map Location 77,003,610 - 77,140,381
singlet/doubletdoublet
Overlap geneLOC100039137, Tfdp1-ps
Upstream genenone
Downstream geneEpha4, LOC100039330, Pax3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070G04.bB6Ng01-070G04.g
ACCDH888407DH888408
length1,1891,089
definitionDH888407|Mus musculus domesticus DNA, BAC clone: B6Ng01-070G04, 5' end.DH888408|Mus musculus domesticus DNA, BAC clone: B6Ng01-070G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,003,610 - 77,004,804)(77,139,361 - 77,140,381)
sequence
gaattcattcattactttagcttgcaattatttgagatttgaaaaaacag
atattgaaataaaagtcattttggatgagtctgatacagtatattaattt
taattacatcattcaggatgataatatggttttatcatttgcttctgcat
tttcttacatgggaatctatttgtccaagaatgtctatagtgcctataac
agagtacttaagagcctgaatgaagagtgagattagtacaataatagctt
tcttctcctgtaaggacattttaatgtagataaaatgagagcatattaga
accagaattaaaattatccagtagggttttttttttccttaaacgtgagc
ttcaggtagtccatcttcaatttagcatcctgaaagtcttaaatattaaa
tacaaatgtcttgtgtctttcttaaatccttagggcaacattcatgcctt
tccaactttccatttcatgtaaagtgatcattccattttagttgggttct
tcctttctagcggcttgtttttaaaaagtatttcttaggctctgtgaaat
ttatttacattcattccatcaaaaagatcactttcctattcaagtaaaat
attgcagggcattcaaaatataagtttaaagctccataatttagacttat
agttatttctggcatataagaacaatcatgaacactccatgtcagacaag
tttatatttcctctcttactgatatttacaattcaaagtagcttaagaat
gttaatagatgaggtctttgcaataatttttggacagatggtgacagtta
aggggagtcttgcactagctagtcatgaaggaaatggtctccctttagtc
tctcttctaagtctagtccttctcatgtgtctcttgtttggctcagatgg
ttgttcctgtcagcccatatcctaccatcatttctccctgactgagtgct
ttcattatttagaatgcacaaaaaaaaaaaaaaaatcatctctaggttgg
ctgccatgccgttacagaacaactcatgcatgcggagacgaaaaattggt
ttcttaggtcgaagatctccctagtccacagagatgtttgaagagtagtc
agcacaatagaaatagtatgtggatttgtgttctggatgtctagttggga
gaaaaatgacatctgttttcctatcgatgtctattgatc
gaattcaaacaaagtgaaaatcatcagcttggtcatatgagtatgaccaa
ataaattaaattaattaacaatacaaaacataactctgggtttctgtatt
agtcagcttgttgttactatatggaaatacctgaggccaaagacgtggta
aagaagttgttttagcttgtcatgttggcgaatggaagtctgaatgtccc
actaaccacagtgaggtcctgtgctaatgacgtcatgtcaacaatgagag
tagctgtgcatctgtctgtgtgttgcctctctcattctccttgtaaagtc
attggggctcagtcatgagagttcaagtccaatgtcctaatgcaatctaa
ccacttctccatgcctcaacttctaaacatcatagttaattaagttctgt
tgcatctacatcgtctcagctcctcttgtcttccctctcttccctccaaa
atccacaatctctcctttagttattattattgcaaaccccacagacatgt
atatacaaccttgtggattcatttaccatgactcataggtccatgtgtcc
agtctagccacgtgggattggacttcctatgcaaccacgaatccctggag
gggtctgcttctccttctggcagtagccactgaccacctggagctcttca
tcatagggtgggaatgagtgacatttcccttgtccacgttggcatggtaa
ctgtagtcattgtgctggtcttgttcaggcagccatattgctgagagttc
agtagtgcaccattcctgtcctgactaggaggcactatctagaagcaggt
gtactgggactctggctctttccatctttctgctcactttcaagacctta
cctgagccttaggtattgggattacattgacaggtatacctgttggtgtt
gggcagtccatagtcactttttctttgtaatttgggacctcttttattct
tcctctgtcacaggaagaagattctttgatgaaaagtaagagctgtattt
atgtggggagtacaagggaaataatttagaatttgaatatagctgtaaaa
atacagtttgggaaaatgcagtagtagctctcctttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77003610_77004804
seq2: B6Ng01-070G04.b_45_1233

seq1  GAATTCATTCATTACTTTAGCTTGCAATTATTTGAGATTTGAAAAAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTACTTTAGCTTGCAATTATTTGAGATTTGAAAAAACAG  50

seq1  ATATTGAAATAAAAGTCATTTTGGATGAGTCTGATACAGTATATTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAAATAAAAGTCATTTTGGATGAGTCTGATACAGTATATTAATTT  100

seq1  TAATTACATCATTCAGGATGATAATATGGTTTTATCATTTGCTTCTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATCATTCAGGATGATAATATGGTTTTATCATTTGCTTCTGCAT  150

seq1  TTTCTTACATGGGAATCTATTTGTCCAAGAATGTCTATAGTGCCTATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACATGGGAATCTATTTGTCCAAGAATGTCTATAGTGCCTATAAC  200

seq1  AGAGTACTTAAGAGCCTGAATGAAGAGTGAGATTAGTACAATAATAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTTAAGAGCCTGAATGAAGAGTGAGATTAGTACAATAATAGCTT  250

seq1  TCTTCTCCTGTAAGGACATTTTAATGTAGATAAAATGAGAGCATATTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTGTAAGGACATTTTAATGTAGATAAAATGAGAGCATATTAGA  300

seq1  ACCAGAATTAAAATTATCCAGTAGGGTTTTTTTTTTCCTTAAACGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAATTAAAATTATCCAGTAGGGTTTTTTTTTTCCTTAAACGTGAGC  350

seq1  TTCAGGTAGTCCATCTTCAATTTAGCATCCTGAAAGTCTTAAATATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTAGTCCATCTTCAATTTAGCATCCTGAAAGTCTTAAATATTAAA  400

seq1  TACAAATGTCTTGTGTCTTTCTTAAATCCTTAGGGCAACATTCATGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTCTTGTGTCTTTCTTAAATCCTTAGGGCAACATTCATGCCTT  450

seq1  TCCAACTTTCCATTTCATGTAAAGTGATCATTCCATTTTAGTTGGGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTTCCATTTCATGTAAAGTGATCATTCCATTTTAGTTGGGTTCT  500

seq1  TCCTTTCTAGCGGCTTGTTTTTAAAAAGTATTTCTTAGGCTCTGTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTAGCGGCTTGTTTTTAAAAAGTATTTCTTAGGCTCTGTGAAAT  550

seq1  TTATTTACATTCATTCCATCAAAAAGATCACTTTCCTATTCAAGTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACATTCATTCCATCAAAAAGATCACTTTCCTATTCAAGTAAAAT  600

seq1  ATTGCAGGGCATTCAAAATATAAGTTTAAAGCTCCATAATTTAGACTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGGCATTCAAAATATAAGTTTAAAGCTCCATAATTTAGACTTAT  650

seq1  AGTTATTTCTGGCATATAAGAACAATCATGAACACTCCATGTCAGACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCTGGCATATAAGAACAATCATGAACACTCCATGTCAGACAAG  700

seq1  TTTATATTTCCTCTCTTACTGATATTTACAATTCAAAGTAGCTTAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTCCTCTCTTACTGATATTTACAATTCAAAGTAGCTTAAGAAT  750

seq1  GTTAATAGATGAGGTCTTTGCAATAATTTTTGGACAGATGGTGACAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGATGAGGTCTTTGCAATAATTTTTGGACAGATGGTGACAGTTA  800

seq1  AGGGGAGTCTTGCACTAGCTAGTCATGAAGGAAATGGTCTCCCTTTAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTCTTGCACTAGCTAGTCATGAAGGAAATGGTCTCCCTTTAGTC  850

seq1  TCTCTTCTAAGTCTAGTCCTTCTCATGTGTCTCTTGTTTGGCTCAGATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTAAGTCTAGTCCTTCTCATGTGTCTCTTGTTTGGCTCAGATGG  900

seq1  TTGTTCCTGTCAGCCCATATCCTACCATCATTTCTCCCTGACTGAGTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTGTCAGCCCATATCCTACCATCATTTCTCCCTGACTGAGTGCT  950

seq1  TTCATTATTTAGAATGCACAAAAAAAAAAAAAAAATCATCTCTAGGTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTTAGAATGCACAAAAAAAAAAAAAAAATCATCTCTAGGTTGG  1000

seq1  CTGCCATGCCGTTACAAGAACAAACTCATGCATGCGGAGACGAGACATTG  1050
      ||||||||||||||| ||||| ||||||||||||||||||||| | ||||
seq2  CTGCCATGCCGTTAC-AGAAC-AACTCATGCATGCGGAGACGAAAAATTG  1048

seq1  GTTTCTTAAGTCGACAGATCTCCCTAGTCCACAGAGATGTTTGAAGAGTT  1100
      |||||||| ||||| ||||||||||||||||||||||||||||||||| |
seq2  GTTTCTTAGGTCGA-AGATCTCCCTAGTCCACAGAGATGTTTGAAGAG-T  1096

seq1  AGTCAGCACATTAGAAATTAGTATGT-GATTTGTG-TCT-GATGTCTATG  1147
      |||||||||| |||||| |||||||| |||||||| ||| |||||||| |
seq2  AGTCAGCACAATAGAAA-TAGTATGTGGATTTGTGTTCTGGATGTCTA-G  1144

seq1  TTGGGAGAAAAATGACAATCTGTTTCCTCATCCAAATGTCTATTGATC  1195
      |||||||||||||||| |||||||| |  |||   |||||||||||||
seq2  TTGGGAGAAAAATGAC-ATCTGTTTTCCTATC--GATGTCTATTGATC  1189

seq1: chr1_77139361_77140381
seq2: B6Ng01-070G04.g_133_1152 (reverse)

seq1  TCTAAAGGAGAGCCTACTACTGCCATTTTCCCAAACCTGTATTTTTACAG  50
      |||||||||||| ||||||||| |||||||||||| ||||||||||||||
seq2  TCTAAAGGAGAG-CTACTACTG-CATTTTCCCAAA-CTGTATTTTTACAG  47

seq1  CTATATTCAAATTCTAAATTATTTCCCTTGTACT-CACACATAAATACAG  99
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  CTATATTCAAATTCTAAATTATTTCCCTTGTACTCCCCACATAAATACAG  97

seq1  CTCTTACTTTTCATCAAAGAATCTTCTTCCTGTGACAGAGGAAGAATAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTTTTCATCAAAGAATCTTCTTCCTGTGACAGAGGAAGAATAAA  147

seq1  AGAGGT-CCAAATTACAAAGAAAAAGTGACTATGGACTGCCCAACACCAA  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCCAAATTACAAAGAAAAAGTGACTATGGACTGCCCAACACCAA  197

seq1  CAGGTATACCTGTCAATGTAATCCCAATACCTAAGGCTCAGGTAAGGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATACCTGTCAATGTAATCCCAATACCTAAGGCTCAGGTAAGGTCT  247

seq1  TGAAAGTGAGCAGAAAGATGGAAAGAGCCAGAGTCCCAGTACACCTGCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGAGCAGAAAGATGGAAAGAGCCAGAGTCCCAGTACACCTGCTT  297

seq1  CTAGATAGTGCCTCCTAGTCAGGACAGGAATGGTGCACTACTGAACTCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAGTGCCTCCTAGTCAGGACAGGAATGGTGCACTACTGAACTCTC  347

seq1  AGCAATATGGCTGCCTGAACAAGACCAGCACAATGACTACAGTTACCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATGGCTGCCTGAACAAGACCAGCACAATGACTACAGTTACCATG  397

seq1  CCAACGTGGACAAGGGAAATGTCACTCATTCCCACCCTATGATGAAGAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGTGGACAAGGGAAATGTCACTCATTCCCACCCTATGATGAAGAGC  447

seq1  TCCAGGTGGTCAGTGGCTACTGCCAGAAGGAGAAGCAGACCCCTCCAGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGGTCAGTGGCTACTGCCAGAAGGAGAAGCAGACCCCTCCAGGG  497

seq1  ATTCGTGGTTGCATAGGAAGTCCAATCCCACGTGGCTAGACTGGACACAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGGTTGCATAGGAAGTCCAATCCCACGTGGCTAGACTGGACACAT  547

seq1  GGACCTATGAGTCATGGTAAATGAATCCACAAGGTTGTATATACATGTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTATGAGTCATGGTAAATGAATCCACAAGGTTGTATATACATGTCT  597

seq1  GTGGGGTTTGCAATAATAATAACTAAAGGAGAGATTGTGGATTTTGGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTTTGCAATAATAATAACTAAAGGAGAGATTGTGGATTTTGGAGG  647

seq1  GAAGAGAGGGAAGACAAGAGGAGCTGAGACGATGTAGATGCAACAGAACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGGGAAGACAAGAGGAGCTGAGACGATGTAGATGCAACAGAACT  697

seq1  TAATTAACTATGATGTTTAGAAGTTGAGGCATGGAGAAGTGGTTAGATTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACTATGATGTTTAGAAGTTGAGGCATGGAGAAGTGGTTAGATTG  747

seq1  CATTAGGACATTGGACTTGAACTCTCATGACTGAGCCCCAATGACTTTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGACATTGGACTTGAACTCTCATGACTGAGCCCCAATGACTTTAC  797

seq1  AAGGAGAATGAGAGAGGCAACACACAGACAGATGCACAGCTACTCTCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATGAGAGAGGCAACACACAGACAGATGCACAGCTACTCTCATT  847

seq1  GTTGACATGACGTCATTAGCACAGGACCTCACTGTGGTTAGTGGGACATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATGACGTCATTAGCACAGGACCTCACTGTGGTTAGTGGGACATT  897

seq1  CAGACTTCCATTCGCCAACATGACAAGCTAAAACAACTTCTTTACCACGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCCATTCGCCAACATGACAAGCTAAAACAACTTCTTTACCACGT  947

seq1  CTTTGGCCTCAGGTATTTCCATATAGTAACAACAAGCTGACTAATACAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCTCAGGTATTTCCATATAGTAACAACAAGCTGACTAATACAGA  997

seq1  AACCCAGAGTTATGTTTTGTATT  1021
      |||||||||||||||||||||||
seq2  AACCCAGAGTTATGTTTTGTATT  1020