BAC Information

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BAC

Clone NameB6Ng01-071J22
Chromosome1 (Build37)
Map Location 95,634,757 - 95,798,862
singlet/doubletdoublet
Overlap geneThap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok
Downstream geneLOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071J22.bB6Ng01-071J22.g
ACCDH889268DH889269
length1,1781,108
definitionDH889268|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J22, 5' end.DH889269|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,797,682 - 95,798,862)(95,634,757 - 95,635,871)
sequence
gaattcagcatagtgacacactattggcttatttaaacattaacagaaag
attacatgttagcaaaagggcatcaggactttgttcctgttggctggggg
gcttatcttgctcacatagcaaccagttgaagtatgcctttacccggcat
caaggggcagtagacagaggggaggttccagccaggtggtgttgacccag
acgagatagccctgcttgtacaatcaagctgttcttaggaatgtcttaac
aacagccctgtctgttctgctttgttcttggccccaggcctcgggctcat
agacaactcttttacatgaatcacaagatacaaaatctcattttctttca
gtggaccatcggccccgcccacagacctagagtgagggagttccacaaaa
ggccacaaggcccagccatgccttatctgaccaaggtaacaggttaaaac
aaaaggtaaaaccagagcaaagcttcagcagactcaagagagatagatga
cagtgacaagtaaagagattaatagtaaaaaataaaaatagagataaagg
agatcagaaagaggtctgagatgaaaggcccattcctgcagaaggtggac
actgtgccttaaagattaatgcccgcgaatacaaataaagaattataatt
tttagcttgcctgatgtacatacattaaagctatttgcaaagcttgcttc
cccttgtttcctgctgcaagctgtatacagcagcttctatctcctactgt
ctcctgctgcttcaagaattttccttttccctgcccgtgaaaacaaattc
aagaccacctggccctttccctatctgtagggacagagtagtggtcataa
agaccacagctgccagaaataacagtcctcgaataaacttccctaccccg
cctcagtctgaattccaaggaaaactacaaactgctttgaccttgctgat
tgctgacagaggtttctgccagattcaaattatcttctggagagacacac
tctggagccacagctagtaaagaaagaaagaaaaccaataatgccctgct
agtatgtgatgaatttatttatgaattcatttctgtgtttgcttaaacat
aggtttccatatcacaatgtgaatttacagaggtgcagctttgctagtca
acaggttccctagccctccttggcagca
gttctgtgaatacacagaatacatagatgctcagtccttactcctttaat
ttgcaagatgcagacaggactctagggctggagagttgactcaacagtta
agagcacttgctgctttgtgtaggacaggtttggcttccagcacccacat
ggtgtttcacaaccattaaccccagttctaggctatccaacccctcttct
gacctctgagggtgatgaacatacatgcaggcaaagcactcatacacacg
agacaaccatatataaaggattagttacgttagtgagaataaaattgtta
atttcacactataaaaacaacacctccaggtaatttaaattagatattct
aaatatttagccagtaacagtatattttactactatattcaagcaagatc
tcatttgtaaaaaacaagtgatcagatgtggcctatgtctaggcatttac
tgcttcaaaagaaaagcctaaattctttgggactttataaaggaaaagtc
aacagacgagacacgtgtgggagagagacataaaagcttgcatgcgcaga
aacacatttctgataaacagaatacattctgtgggatcagtgagatggct
cagtgagtaaaggcgcttgctgccaagcctgatgacctgggttcaatccc
tgggacccacaaaagaatggattccttcaagttgtccttagaccgactgc
cacatgtgtgctgtggtacaggtattcgcacacacatacatttaaaaaga
agtgcaataataatacactttttaaaagaaaagtcttgtaatatcttata
caaacaattagcacctgaatttgtctcaggaaagacaagtggtgttataa
aacttcctacccagcaaggtagggagctgtccttctcacagctattcaaa
catgacctacatacagcccaggagacaggtcgtctcttaactgctctaga
actcaccgtttaccctttaggagccattctctctctgacattcaccaact
ttgtttctgtccatagtttacattctccataaaattcgtaatcactctgt
ctggtaaatttttatgttcattcctgggctcattatttctaataaacacc
taacagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95797682_95798862
seq2: B6Ng01-071J22.b_44_1221 (reverse)

seq1  TGCTGCAAAGGAGGGCTAGGGGACCCTTGTTGACTAGCAAAGCCTGGCAC  50
      |||||| |||||||||||||| |||  ||||||||||||||| |||   |
seq2  TGCTGCCAAGGAGGGCTAGGGAACC--TGTTGACTAGCAAAG-CTGCACC  47

seq1  TCTGTTAAATCACA-TGTGATATG--AAACTATGTTT-AGCAAACCAACA  96
      ||||| || ||||| |||||||||  || |||||||| |||||||  |||
seq2  TCTGTAAATTCACATTGTGATATGGAAACCTATGTTTAAGCAAAC--ACA  95

seq1  GAAATGAAAATCATAAATAAA-TCATCACATACTAGCAGGGCATTATTGT  145
      |||||| || ||||||||||| ||||||||||||||||||||||||||| 
seq2  GAAATG-AATTCATAAATAAATTCATCACATACTAGCAGGGCATTATTGG  144

seq1  TTTTCTTTCTTTCTTTTACTAGCCTTGTGGCTCCAGAGTGTGTCTCTCCA  195
      ||||||||||||| |||||||||  |||||||||||||||||||||||||
seq2  TTTTCTTTCTTTC-TTTACTAGC--TGTGGCTCCAGAGTGTGTCTCTCCA  191

seq1  G-AGATAATTTGAATCTGGCAGAAACCTCTGTCAGCAATCAGCAAGGTCA  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATAATTTGAATCTGGCAGAAACCTCTGTCAGCAATCAGCAAGGTCA  241

seq1  AAGCAGTTTGTAGTTTTCCTTGGAATTCAGACTGAGGCGGGGTAGGGAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTTGTAGTTTTCCTTGGAATTCAGACTGAGGCGGGGTAGGGAAG  291

seq1  TTTATTCGAGGACTGTTATTTCTGGCAGCTGTGGTCTTTATGACCACTAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCGAGGACTGTTATTTCTGGCAGCTGTGGTCTTTATGACCACTAC  341

seq1  TCTGTCCCTACAGATAGGGAAAGGGCCAGGTGGTCTTGAATTTGTTTTCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCTACAGATAGGGAAAGGGCCAGGTGGTCTTGAATTTGTTTTCA  391

seq1  CGGGCAGGGAAAAGGAAAATTCTTGAAGCAGCAGGAGACAGTAGGAGATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGGGAAAAGGAAAATTCTTGAAGCAGCAGGAGACAGTAGGAGATA  441

seq1  GAAGCTGCTGTATACAGCTTGCAGCAGGAAACAAGGGGAAGCAAGCTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGCTGTATACAGCTTGCAGCAGGAAACAAGGGGAAGCAAGCTTTG  491

seq1  CAAATAGCTTTAATGTATGTACATCAGGCAAGCTAAAAATTATAATTCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGCTTTAATGTATGTACATCAGGCAAGCTAAAAATTATAATTCTT  541

seq1  TATTTGTATTCGCGGGCATTAATCTTTAAGGCACAGTGTCCACCTTCTGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATTCGCGGGCATTAATCTTTAAGGCACAGTGTCCACCTTCTGC  591

seq1  AGGAATGGGCCTTTCATCTCAGACCTCTTTCTGATCTCCTTTATCTCTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGGCCTTTCATCTCAGACCTCTTTCTGATCTCCTTTATCTCTAT  641

seq1  TTTTATTTTTTACTATTAATCTCTTTACTTGTCACTGTCATCTATCTCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTACTATTAATCTCTTTACTTGTCACTGTCATCTATCTCTC  691

seq1  TTGAGTCTGCTGAAGCTTTGCTCTGGTTTTACCTTTTGTTTTAACCTGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGCTGAAGCTTTGCTCTGGTTTTACCTTTTGTTTTAACCTGTT  741

seq1  ACCTTGGTCAGATAAGGCATGGCTGGGCCTTGTGGCCTTTTGTGGAACTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTCAGATAAGGCATGGCTGGGCCTTGTGGCCTTTTGTGGAACTC  791

seq1  CCTCACTCTAGGTCTGTGGGCGGGGCCGATGGTCCACTGAAAGAAAATGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCTAGGTCTGTGGGCGGGGCCGATGGTCCACTGAAAGAAAATGA  841

seq1  GATTTTGTATCTTGTGATTCATGTAAAAGAGTTGTCTATGAGCCCGAGGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTATCTTGTGATTCATGTAAAAGAGTTGTCTATGAGCCCGAGGC  891

seq1  CTGGGGCCAAGAACAAAGCAGAACAGACAGGGCTGTTGTTAAGACATTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCAAGAACAAAGCAGAACAGACAGGGCTGTTGTTAAGACATTCC  941

seq1  TAAGAACAGCTTGATTGTACAAGCAGGGCTATCTCGTCTGGGTCAACACC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAGCTTGATTGTACAAGCAGGGCTATCTCGTCTGGGTCAACACC  991

seq1  ACCTGGCTGGAACCTCCCCTCTGTCTACTGCCCCTTGATGCCGGGTAAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTGGAACCTCCCCTCTGTCTACTGCCCCTTGATGCCGGGTAAAG  1041

seq1  GCATACTTCAACTGGTTGCTATGTGAGCAAGATAAGCCCCCCAGCCAACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACTTCAACTGGTTGCTATGTGAGCAAGATAAGCCCCCCAGCCAACA  1091

seq1  GGAACAAAGTCCTGATGCCCTTTTGCTAACATGTAATCTTTCTGTTAATG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAGTCCTGATGCCCTTTTGCTAACATGTAATCTTTCTGTTAATG  1141

seq1  TTTAAATAAGCCAATAGTGTGTCACTATGCTGAATTC  1181
      |||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAAGCCAATAGTGTGTCACTATGCTGAATTC  1178

seq1: chr1_95634757_95635871
seq2: B6Ng01-071J22.g_77_1184

seq1  GTTCTGTGAATACACAGAATACATAGATGCTCAGTCCTTACTCCTTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGAATACACAGAATACATAGATGCTCAGTCCTTACTCCTTTAAT  50

seq1  TTGCAAGATGCAGACAGGACTCTAGGGCTGGAGAGTTGACTCAACAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGATGCAGACAGGACTCTAGGGCTGGAGAGTTGACTCAACAGTTA  100

seq1  AGAGCACTTGCTGCTTTGTGTAGGACAGGTTTGGCTTCCAGCACCCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTTGCTGCTTTGTGTAGGACAGGTTTGGCTTCCAGCACCCACAT  150

seq1  GGTGTTTCACAACCATTAACCCCAGTTCTAGGCTATCCAACCCCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCACAACCATTAACCCCAGTTCTAGGCTATCCAACCCCTCTTCT  200

seq1  GACCTCTGAGGGTGATGAACATACATGCAGGCAAAGCACTCATACACACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGAGGGTGATGAACATACATGCAGGCAAAGCACTCATACACACG  250

seq1  AGACAACCATATATAAAGGATTAGTTACGTTAGTGAGAATAAAATTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCATATATAAAGGATTAGTTACGTTAGTGAGAATAAAATTGTTA  300

seq1  ATTTCACACTATAAAAACAACACCTCCAGGTAATTTAAATTAGATATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACACTATAAAAACAACACCTCCAGGTAATTTAAATTAGATATTCT  350

seq1  AAATATTTAGCCAGTAACAGTATATTTTACTACTATATTCAAGCAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAGCCAGTAACAGTATATTTTACTACTATATTCAAGCAAGATC  400

seq1  TCATTTGTAAAAAACAAGTGATCAGATGTGGCCTATGTCTAGGCATTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTAAAAAACAAGTGATCAGATGTGGCCTATGTCTAGGCATTTAC  450

seq1  TGCTTCAAAAGAAAAGCCTAAATTCTTTGGGACTTTATAAAGGAAAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAAAAGAAAAGCCTAAATTCTTTGGGACTTTATAAAGGAAAAGTC  500

seq1  AACAGACGAGACACGTGTGGGAGAGAGACATAAAAGCTTGCATGCGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACGAGACACGTGTGGGAGAGAGACATAAAAGCTTGCATGCGCAGA  550

seq1  AACACATTTCTGATAAACAGAATACATTCTGTGGGATCAGTGAGATGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTTCTGATAAACAGAATACATTCTGTGGGATCAGTGAGATGGCT  600

seq1  CAGTGAGTAAAGGCGCTTGCTGCCAAGCCTGATGACCTGGGTTCAATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTAAAGGCGCTTGCTGCCAAGCCTGATGACCTGGGTTCAATCCC  650

seq1  TGGGACCCACAAAAGAATGGATTCCTTCAAGTTGTCCTTAGACCGACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCACAAAAGAATGGATTCCTTCAAGTTGTCCTTAGACCGACTGC  700

seq1  CACATGTGTGCTGTGGTACAGGTATTCGCACACACATACATTTAAAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGTGCTGTGGTACAGGTATTCGCACACACATACATTTAAAAAGA  750

seq1  AGTGCAATAATAATACACTTTTTAAAAGAAAAGTCTTGTAATATCTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATAATAATACACTTTTTAAAAGAAAAGTCTTGTAATATCTTATA  800

seq1  CAAACAATTAGCACCTGAATTTGTCTCAGGAAAGACAAGTGGTGTTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTAGCACCTGAATTTGTCTCAGGAAAGACAAGTGGTGTTATAA  850

seq1  AACTTCCTACCCAGCAAGGTAGGGAGCTGTCCTTCTCACAGCTATTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTACCCAGCAAGGTAGGGAGCTGTCCTTCTCACAGCTATTCAAA  900

seq1  CATGACCTACATACAGCCCAGGAGACAGGTCGTCTCTTAACTGCTCTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTACATACAGCCCAGGAGACAGGTCGTCTCTTAACTGCTCTAGA  950

seq1  ACTCACCGTTTACCCTTTAGGGAGCCATTCTCTCTCTGACAATTCACCAA  1000
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  ACTCACCGTTTACCCTTTA-GGAGCCATTCTCTCTCTGAC-ATTCACCAA  998

seq1  CTTTGTTTCTGTCCATAGTTTACATTCTCCATTAAAATTCGTAATCAACT  1050
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  CTTTGTTTCTGTCCATAGTTTACATTCTCCA-TAAAATTCGTAATC-ACT  1046

seq1  CTGGTCTGGTAAAAATTTTTATGTCCATTCCTTGGGCTCATTATTTCTAA  1100
      || |||||||  |||||||||||| |||||| ||||||||||||||||||
seq2  CT-GTCTGGT--AAATTTTTATGTTCATTCC-TGGGCTCATTATTTCTAA  1092

seq1  T-AACACCTAACAGCC  1115
      | ||||||||||||||
seq2  TAAACACCTAACAGCC  1108