BAC Information

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BAC

Clone NameB6Ng01-073L06
Chromosome1 (Build37)
Map Location 80,474,416 - 80,654,450
singlet/doubletdoublet
Overlap geneDock10
Upstream geneAp1s3, Wdfy1, Mrpl44, Serpine2, EG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik
Downstream geneLOC665092, 9430031J16Rik, EG621020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073L06.bB6Ng01-073L06.g
ACCDH890752DH890753
length1,1831,192
definitionDH890752|Mus musculus domesticus DNA, BAC clone: B6Ng01-073L06, 5' end.DH890753|Mus musculus domesticus DNA, BAC clone: B6Ng01-073L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,474,416 - 80,475,623)(80,653,257 - 80,654,450)
sequence
gaattcagttcacatgcttagcctatggaagtgtttctaaattgagcaaa
tggctgtgggttttataggccgctatctatctactcaaccaaggttcagg
tcatctccagaattaggctttgtgatcgaaaggagaaaaacatataatta
ttgtttagggtcttggtcatcaactgggtgagttttttatattgttgctc
atatagaaactagtaatataaagatgtggaattttaagagtatcagcaaa
gccgaaggatatcaattaaacgtagttaaaattgctgtgcttgtgttata
ttaccatttttctctatttgtttagaattaaatagtcaagttacttttaa
aattggatttttgagaaggctagtttggttactccccagcaggctggaca
ctaagggtatggcaacacagagtgagacctgagcttcatcccatcggtct
ggaagctgcagaacagctctttctgctctcagtctctgtgccgcagctag
agcacggtgaagggaaggggaagggaaggcttgcatttggaactacttat
ttttcacaaacgagaaagaagaagaaggatccacgaagagctcactgggt
tgcccaccccaaagtgggaagaccaagggaagtgtgacaggattagttaa
tcctagatattctgcctacattcctggtgggttctcagcagctcagaaac
ctgctctagagtcaaaagtaatatgtgtttctggtttacaaacagaagag
aatgattcaaggggctcaactctcactagtggggaggggtgtcgatgtcc
agaaattgtgtttgagcaagtatattagtcttaccataaagcaaatgaga
agctcacaaaattccccactaggacattcaaatcttcctgaagcctctat
ctatggaaatgcacactaattttaaaaatatttaatgctttcttccatta
gaaaattactggtgaataggacaagtgaatctctgagattttttggcatc
attagagaaaggtttacttgtctttacctcgattaaaagaaaatgacttg
tttctctgggtgttgagatgatgccaatataccaggctaaaaccagatcg
atgctgtggttgcatctgctgagtcttcaacttgtcatctctgatccagc
caataaactggaaatggatttcatgactgaaat
gaattccttaatgtcaagaattcaaaatctactcacactcagaagggcac
tggaagcaggatatagaaagaacagaaaggagctcagagccactgaggca
gagggaaagttgtcttggtagatggaagcaatagatagtactgtgacgcc
caaccccatagatgtacagcttccacccttttccttgccactgccattcc
ttcactctccttgagctccattcccattggcccagacaagcagacaccca
gagacatgagacatcagagaagtcacacccaccatgactagtccttaaag
agactgtgaggaatgggtttatatttggaagtttgctgaaaatacaaaat
ttcgttggaagaattgttcatattcaatttgtggtaatgtgtatgtacat
acacaacacacacacacacacacagaaaccaacttgacctgtgagtgaaa
gtttatggcattgtcgaggtattaagatggtgttagagggtaagctggca
gtggcttttatcacagacctcctataaattaaagttccctgcagcttgtg
cagaaacattaatttccccggtgtcaggcaggcttgtaattggcctgtga
tgtatttttaatgatatttattatctttcaagtgtttctagaaaactaaa
tgagacatgtaatttaatttgatttacgtcttgttggatattttctatat
ctttataagcaccaccattgtatagagaagcatttactgaccttgattta
aattttcatttgctatacacaactgtgaacattttgacatgttctaaaga
tgtatacagggttagcagtacctacaatggggacctattatttaccaagt
ttctaaaatgaaaacaagactgcaaatgtaaattcaatttgagatatctc
ttacacaatacattctttaacactggtttgtctttggttctaatgaattt
tactaaatatgaaaaacttgatccttattaatctcacctagctgctaaag
cttatatgctgtatcaggttgaaattcattccccatctctgaaataaact
aattattcaaaggatgacggccgcttgatttcatcatgatttgtctgaat
ttggttgccagggaaacatttcaaactctcattactctgagtctgcccgc
tgaatgggtccttaacttggattagctaggttcaattccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80474416_80475623
seq2: B6Ng01-073L06.b_48_1230

seq1  GAATTCAGTTCACATGCTTAGCCTATGGAAGTGTTTCTAAATTGAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCACATGCTTAGCCTATGGAAGTGTTTCTAAATTGAGCAAA  50

seq1  TGGCTGTGGGTTTTATAGGCCGCTATCTATCTACTCAACCAAGGTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGGTTTTATAGGCCGCTATCTATCTACTCAACCAAGGTTCAGG  100

seq1  TCATCTCCAGAATTAGGCTTTGTGATCGAAAGGAGAAAAACATATAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCAGAATTAGGCTTTGTGATCGAAAGGAGAAAAACATATAATTA  150

seq1  TTGTTTAGGGTCTTGGTCATCAACTGGGTGAGTTTTTTATATTGTTGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGGGTCTTGGTCATCAACTGGGTGAGTTTTTTATATTGTTGCTC  200

seq1  ATATAGAAACTAGTAATATAAAGATGTGGAATTTTAAGAGTATCAGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAACTAGTAATATAAAGATGTGGAATTTTAAGAGTATCAGCAAA  250

seq1  GCCGAAGGATATCAATTAAACGTAGTTAAAATTGCTGTGCTTGTGTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAAGGATATCAATTAAACGTAGTTAAAATTGCTGTGCTTGTGTTATA  300

seq1  TTACCATTTTTCTCTATTTGTTTAGAATTAAATAGTCAAGTTACTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTTTTCTCTATTTGTTTAGAATTAAATAGTCAAGTTACTTTTAA  350

seq1  AATTGGATTTTTGAGAAGGCTAGTTTGGTTACTCCCCAGCAGGCTGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTTTTGAGAAGGCTAGTTTGGTTACTCCCCAGCAGGCTGGACA  400

seq1  CTAAGGGTATGGCAACACAGAGTGAGACCTGAGCTTCATCCCATCGGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTATGGCAACACAGAGTGAGACCTGAGCTTCATCCCATCGGTCT  450

seq1  GGAAGCTGCAGAACAGCTCTTTCTGCTCTCAGTCTCTGTGCCGCAGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGCAGAACAGCTCTTTCTGCTCTCAGTCTCTGTGCCGCAGCTAG  500

seq1  AGCACGGTGAAGGGAAGGGGAAGGGAAGGCTTGCATTTGGAACTACTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGTGAAGGGAAGGGGAAGGGAAGGCTTGCATTTGGAACTACTTAT  550

seq1  TTTTCACAAACGAGAAAGAAGAAGAAGGATCCACGAAGAGCTCACTGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAACGAGAAAGAAGAAGAAGGATCCACGAAGAGCTCACTGGGT  600

seq1  TGCCCACCCCAAAGTGGGAAGACCAAGGGAAGTGTGACAGGATTAGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCCCAAAGTGGGAAGACCAAGGGAAGTGTGACAGGATTAGTTAA  650

seq1  TCCTAGATATTCTGCCTACATTCCTGGTGGGTTCTCAGCAGCTCAGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATATTCTGCCTACATTCCTGGTGGGTTCTCAGCAGCTCAGAAAC  700

seq1  CTGCTCTAGAGTCAAAAGTAATATGTGTTTCTGGTTTACAAACAGAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTAGAGTCAAAAGTAATATGTGTTTCTGGTTTACAAACAGAAGAG  750

seq1  AATGATTCAAGGGGCTCAACTCTCACTAGTGGGGAGGGGTGTCGATGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCAAGGGGCTCAACTCTCACTAGTGGGGAGGGGTGTCGATGTCC  800

seq1  AGAAATTGTGTTTGAGCAAGTATATTAGTCTTACCATAAAGCAAATGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTGTTTGAGCAAGTATATTAGTCTTACCATAAAGCAAATGAGA  850

seq1  AGCTCACAAAATTCCCCACTAGGACATTCAAATCTTCCTGAAGCCTCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACAAAATTCCCCACTAGGACATTCAAATCTTCCTGAAGCCTCTAT  900

seq1  CTATGGAAATGCACACTAATTTTAAAAAATATTTAATGCTTTCTTCCATT  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTATGGAAATGCACACTAATTTT-AAAAATATTTAATGCTTTCTTCCATT  949

seq1  AGAAAAATTACTGGTGAATAGGACAAGTGGAATCTTCTGAGATATTTTTG  1000
      || ||||||||||||||||||||||||| ||||| |||||||| ||||||
seq2  AG-AAAATTACTGGTGAATAGGACAAGT-GAATC-TCTGAGAT-TTTTTG  995

seq1  GCATCATTAGAGAAAGTTTTACTTGTCTTTACCTCAGATTTAAAAAGAAA  1050
      |||||||||||||||| |||||||||||||||||| ||||  ||||||||
seq2  GCATCATTAGAGAAAGGTTTACTTGTCTTTACCTC-GATT--AAAAGAAA  1042

seq1  ATGACTGTTTTCTCTGGGTGTGAAGATGATGCCCATATACCCAGGCTAGA  1100
      ||||||  |||||||||||||  |||||||||| ||||| |||||||| |
seq2  ATGACTTGTTTCTCTGGGTGTTGAGATGATGCCAATATA-CCAGGCTA-A  1090

seq1  AGCAAGATCGAATGCTGTGGTTTGTCATCTTGCTGAGTTCTTCAAACTTT  1150
      | | |||||| |||||||||||   |||| ||||||| ||||| ||||| 
seq2  AACCAGATCG-ATGCTGTGGTT--GCATC-TGCTGAG-TCTTC-AACTT-  1133

seq1  GGTCACTCCTGAGTACAAGGCAGATAAACTGATAATAATGATTTCTAATG  1200
       ||||   |||| | ||  ||  ||||||||  |||   ||||||  |||
seq2  -GTCATCTCTGA-TCCA--GCCAATAAACTGGAAAT--GGATTTC--ATG  1175

seq1  ACTGAAAT  1208
      ||||||||
seq2  ACTGAAAT  1183

seq1: chr1_80653257_80654450
seq2: B6Ng01-073L06.g_68_1259 (reverse)

seq1  AATGGAA--AAACACTAGCTAAAATCAAAGTTAA-GAACCATACAGCTGG  47
      |||||||   ||| ||||||  |||| ||||||| || |||| |||| ||
seq2  AATGGAATTGAAC-CTAGCT--AATCCAAGTTAAGGACCCATTCAGC-GG  46

seq1  GCAGACTCAGAGTAATTGGAGTTTTGAAATGGTTCCCTTGGCAACC-AAG  96
      ||||||||||||||||  ||| ||||||||| ||||| |||||||| || 
seq2  GCAGACTCAGAGTAATGAGAG-TTTGAAATGTTTCCC-TGGCAACCAAAT  94

seq1  TCAGACAAATCATGGATGAAATCAAGCGGCGGTCATCCTTTGAAT-ATTA  145
      ||||||||||||| |||||||||||||||| |||||||||||||| ||||
seq2  TCAGACAAATCAT-GATGAAATCAAGCGGCCGTCATCCTTTGAATAATTA  143

seq1  GTTTATTTCAGAGAT-GTGAATGAATATCAACCTGATACAGCATATAAAG  194
      ||||||||||||||| | |||||||| ||||||||||||||||||| |||
seq2  GTTTATTTCAGAGATGGGGAATGAATTTCAACCTGATACAGCATAT-AAG  192

seq1  CTTTAGCAGCTAGGTGAGATTAAT-AGGATC-AGTTTTTCATATTTAGTA  242
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  CTTTAGCAGCTAGGTGAGATTAATAAGGATCAAGTTTTTCATATTTAGTA  242

seq1  AAATTTCATTAGAAACCAAAGACAAACCAGTGTTAAAGAATGTATTGTGT  292
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAA-TTCATTAG-AACCAAAGACAAACCAGTGTTAAAGAATGTATTGTGT  290

seq1  AAGAGATACTCTCAAATTGAATTTACATTTGCAGTCTTGTTTTCATTTTA  342
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATA-TCTCAAATTGAATTTACATTTGCAGTCTTGTTTTCATTTTA  339

seq1  GAAACTTGGTAAATAATAGGTCCCCATTGTAGGTACTGCTAACCCTGTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTGGTAAATAATAGGTCCCCATTGTAGGTACTGCTAACCCTGTAT  389

seq1  ACATCTTTAGAACATGTC-AAATGTTCACAGTTGTGTATAGCAAATGAAA  441
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACATCTTTAGAACATGTCAAAATGTTCACAGTTGTGTATAGCAAATGAAA  439

seq1  ATTTAAATCAAGGTCAGTAAATGCTTCTCTATACAATGGTGGTGCTTATA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATCAAGGTCAGTAAATGCTTCTCTATACAATGGTGGTGCTTATA  489

seq1  AAGATATAGAAAATATCCAACAAGACGTAAATCAAATTAAATTACATGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATAGAAAATATCCAACAAGACGTAAATCAAATTAAATTACATGTC  539

seq1  TCATTTAGTTTTCTAGAAACACTTGAAAGATAATAAATATCATTAAAAAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGTTTTCTAGAAACACTTGAAAGATAATAAATATCATTAAAAAT  589

seq1  ACATCACAGGCCAATTACAAGCCTGCCTGACACCGGGGAAATTAATGTTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACAGGCCAATTACAAGCCTGCCTGACACCGGGGAAATTAATGTTT  639

seq1  CTGCACAAGCTGCAGGGAACTTTAATTTATAGGAGGTCTGTGATAAAAGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGCTGCAGGGAACTTTAATTTATAGGAGGTCTGTGATAAAAGC  689

seq1  CACTGCCAGCTTACCCTCTAACACCATCTTAATACCTCGACAATGCCATA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCAGCTTACCCTCTAACACCATCTTAATACCTCGACAATGCCATA  739

seq1  AACTTTCACTCACAGGTCAAGTTGGTTTCTGTGTGTGTGTGTGTGTGTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCACTCACAGGTCAAGTTGGTTTCTGTGTGTGTGTGTGTGTGTTG  789

seq1  TGTATGTACATACACATTACCACAAATTGAATATGAACAATTCTTCCAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTACATACACATTACCACAAATTGAATATGAACAATTCTTCCAAC  839

seq1  GAAATTTTGTATTTTCAGCAAACTTCCAAATATAAACCCATTCCTCACAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTGTATTTTCAGCAAACTTCCAAATATAAACCCATTCCTCACAG  889

seq1  TCTCTTTAAGGACTAGTCATGGTGGGTGTGACTTCTCTGATGTCTCATGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTAAGGACTAGTCATGGTGGGTGTGACTTCTCTGATGTCTCATGT  939

seq1  CTCTGGGTGTCTGCTTGTCTGGGCCAATGGGAATGGAGCTCAAGGAGAGT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTGTCTGCTTGTCTGGGCCAATGGGAATGGAGCTCAAGGAGAGT  989

seq1  GAAGGAATGGCAGTGGCAAGGAAAAGGGTGGAAGCTGTACATCTATGGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGGCAGTGGCAAGGAAAAGGGTGGAAGCTGTACATCTATGGGG  1039

seq1  TTGGGCGTCACAGTACTATCTATTGCTTCCATCTACCAAGACAACTTTCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCGTCACAGTACTATCTATTGCTTCCATCTACCAAGACAACTTTCC  1089

seq1  CTCTGCCTCAGTGGCTCTGAGCTCCTTTCTGTTCTTTCTATATCCTGCTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCAGTGGCTCTGAGCTCCTTTCTGTTCTTTCTATATCCTGCTT  1139

seq1  CCAGTGCCCTTCTGAGTGTGAGTAGATTTTGAATTCTTGACATTAAGGAA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCCTTCTGAGTGTGAGTAGATTTTGAATTCTTGACATTAAGGAA  1189

seq1  TTC  1194
      |||
seq2  TTC  1192