BAC Information

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BAC

Clone NameB6Ng01-073N14
Chromosome1 (Build37)
Map Location 39,747,978 - 39,908,171
singlet/doubletdoublet
Overlap gene4933400N17Rik, LOC100042065
Upstream geneLonrf2, Chst10, EG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2
Downstream geneMap4k4, Il1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073N14.bB6Ng01-073N14.g
ACCDH890858DH890859
length6981,143
definitionDH890858|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N14, 5' end.DH890859|Mus musculus domesticus DNA, BAC clone: B6Ng01-073N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,907,474 - 39,908,171)(39,747,978 - 39,749,120)
sequence
gaattcccaatgaagaggaagtggtgtgtgcctgaccaagttcctgccag
gcgcagacactcacacgtctacagacagaagccaaagggcttttggtggc
ttcttactctgtttcttccaacagctgccagagtgcggtgaggacaggat
tcctggcatcaccaggcctgtgtgccacacataggtttgcctctgagttc
caactgaatagagaacccacacatgttcccaagaaatacacatctagccg
cttcacctctagctacagctgtaatgtgtctttactggaacaaggttaaa
tgcattttgaagtagctaagacaatgtcacccaaagcatttaggacacat
tgggggaatatcgttgaagaaaaaaaaatgtcttcctttcccacaatgct
catttcctcaggttgctaggggtaagatagaacacgtctattcaaatgag
aacatattagaatgggatcccattacgcagagagctctcggtattgaagt
gggtttggcctaatgctgcgtgtgttataatgttaattttggtccccaaa
actgcttacaggagtgtctgcacataagacacaggggaccctgcccccag
ttggttttggattgatcagtaaagagctgttgccaatggcgggacaggat
ggaagaggtggtacttctaggttcctgggggagggggtaggagaacgt
gaattctggcagcttcagggtcagcatttcacaccccagccgtggcttcc
tcagttcctatgtgcacctggctgagtttggctacttgctggtctctcag
ggttttggctcttgggggtcagcagcttctttgaactcgcaggcaccctt
cctcagggcagatggctgtgctcagccatcatcccgaagtgagccacaca
cagtagtgaacacctcctggggggttgctctctctttgtgatacccctgg
tcattaccgagacctaccctgaggactagagagttggggatactgcccag
cagccattgctcctgaactctgagcacctgaccctgaacttggcgaaatg
cgtcctgtgagttccgtgtttccagtgtgctgcatccacacccctcctgg
aggactctgtgacacacatggggcaggagtgttgagggtgatgctcaagg
cttccttccatgtcctgcctgttcttcccacccccctcactgtccactgt
tgtctggtctgtggggggtgctgaggtactcgaccatccgttccagccct
gagcagcttctcacggtgacagcccagttaggccacctgccctaaagtcc
agactgacctggatatttctgctctctggctgctgctgctgctgctgctg
ctgctgctgctgctgctgctgccgttcccaaagcaaagtgtggtttctca
aagtgtggttctgaaaccacgtcctggtgctagggagccagattcctcgt
ccctggatgacttggaggaggccagaaatctagtgcttcaaacatttctc
taagaacacactgggcgacagctgtaaatgtaggcagttgtgtgtgtgca
cgcatgcatgtgttttgcacacatgagctcccgttgtggaggagaagggt
ggaatgccaggcattttcctctgtgtccagcttcttgcctcaagacaggg
tctctcactgaactggaagctctatgttttgtctaggcttgatggccatg
aagccagccaattcctcttttctcttgccccttaattgctggtttacagg
catgcacagcttgtgccttggcgtttctgtgcatgcctgagaatcaattt
caaacccaactcctcacactatacaccctacgtaagcctctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39907474_39908171
seq2: B6Ng01-073N14.b_45_742 (reverse)

seq1  ACGTTCTCCTACCCCCTCCCCCAGGAACCTAGAAGTACCACCTCTTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTCTCCTACCCCCTCCCCCAGGAACCTAGAAGTACCACCTCTTCCAT  50

seq1  CCTGTCCCGCCATTGGCAACAGCTCTTTACTGATCAATCCAAAACCAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCCGCCATTGGCAACAGCTCTTTACTGATCAATCCAAAACCAACT  100

seq1  GGGGGCAGGGTCCCCTGTGTCTTATGTGCAGACACTCCTGTAAGCAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAGGGTCCCCTGTGTCTTATGTGCAGACACTCCTGTAAGCAGTTT  150

seq1  TGGGGACCAAAATTAACATTATAACACACGCAGCATTAGGCCAAACCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCAAAATTAACATTATAACACACGCAGCATTAGGCCAAACCCAC  200

seq1  TTCAATACCGAGAGCTCTCTGCGTAATGGGATCCCATTCTAATATGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACCGAGAGCTCTCTGCGTAATGGGATCCCATTCTAATATGTTCT  250

seq1  CATTTGAATAGACGTGTTCTATCTTACCCCTAGCAACCTGAGGAAATGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATAGACGTGTTCTATCTTACCCCTAGCAACCTGAGGAAATGAG  300

seq1  CATTGTGGGAAAGGAAGACATTTTTTTTTCTTCAACGATATTCCCCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGGAAAGGAAGACATTTTTTTTTCTTCAACGATATTCCCCCAAT  350

seq1  GTGTCCTAAATGCTTTGGGTGACATTGTCTTAGCTACTTCAAAATGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTAAATGCTTTGGGTGACATTGTCTTAGCTACTTCAAAATGCATT  400

seq1  TAACCTTGTTCCAGTAAAGACACATTACAGCTGTAGCTAGAGGTGAAGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGTTCCAGTAAAGACACATTACAGCTGTAGCTAGAGGTGAAGCG  450

seq1  GCTAGATGTGTATTTCTTGGGAACATGTGTGGGTTCTCTATTCAGTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATGTGTATTTCTTGGGAACATGTGTGGGTTCTCTATTCAGTTGGA  500

seq1  ACTCAGAGGCAAACCTATGTGTGGCACACAGGCCTGGTGATGCCAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGGCAAACCTATGTGTGGCACACAGGCCTGGTGATGCCAGGAAT  550

seq1  CCTGTCCTCACCGCACTCTGGCAGCTGTTGGAAGAAACAGAGTAAGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCCTCACCGCACTCTGGCAGCTGTTGGAAGAAACAGAGTAAGAAGC  600

seq1  CACCAAAAGCCCTTTGGCTTCTGTCTGTAGACGTGTGAGTGTCTGCGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAAGCCCTTTGGCTTCTGTCTGTAGACGTGTGAGTGTCTGCGCCT  650

seq1  GGCAGGAACTTGGTCAGGCACACACCACTTCCTCTTCATTGGGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACTTGGTCAGGCACACACCACTTCCTCTTCATTGGGAATTC  698

seq1: chr1_39747978_39749120
seq2: B6Ng01-073N14.g_69_1211

seq1  GAATTCTGGCAGCTTCAGGGTCAGCATTTCACACCCCAGCCGTGGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCAGCTTCAGGGTCAGCATTTCACACCCCAGCCGTGGCTTCC  50

seq1  TCAGTTCCTATGTGCACCTGGCTGAGTTTGGCTACTTGCTGGTCTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTATGTGCACCTGGCTGAGTTTGGCTACTTGCTGGTCTCTCAG  100

seq1  GGTTTTGGCTCTTGGGGGTCAGCAGCTTCTTTGAACTCGCAGGCACCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGCTCTTGGGGGTCAGCAGCTTCTTTGAACTCGCAGGCACCCTT  150

seq1  CCTCAGGGCAGATGGCTGTGCTCAGCCATCATCCCGAAGTGAGCCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGCAGATGGCTGTGCTCAGCCATCATCCCGAAGTGAGCCACACA  200

seq1  CAGTAGTGAACACCTCCTGGGGGGTTGCTCTCTCTTTGTGATACCCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGAACACCTCCTGGGGGGTTGCTCTCTCTTTGTGATACCCCTGG  250

seq1  TCATTACCGAGACCTACCCTGAGGACTAGAGAGTTGGGGATACTGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACCGAGACCTACCCTGAGGACTAGAGAGTTGGGGATACTGCCCAG  300

seq1  CAGCCATTGCTCCTGAACTCTGAGCACCTGACCCTGAACTTGGCGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTGCTCCTGAACTCTGAGCACCTGACCCTGAACTTGGCGAAATG  350

seq1  CGTCCTGTGAGTTCCGTGTTTCCAGTGTGCTGCATCCACACCCCTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGTGAGTTCCGTGTTTCCAGTGTGCTGCATCCACACCCCTCCTGG  400

seq1  AGGACTCTGTGACACACATGGGGCAGGAGTGTTGAGGGTGATGCTCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTGTGACACACATGGGGCAGGAGTGTTGAGGGTGATGCTCAAGG  450

seq1  CTTCCTTCCATGTCCTGCCTGTTCTTCCCACCCCCCTCACTGTCCACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCATGTCCTGCCTGTTCTTCCCACCCCCCTCACTGTCCACTGT  500

seq1  TGTCTGGTCTGTGGGGGGTGCTGAGGTACTCGACCATCCGTTCCAGCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTCTGTGGGGGGTGCTGAGGTACTCGACCATCCGTTCCAGCCCT  550

seq1  GAGCAGCTTCTCACGGTGACAGCCCAGTTAGGCCACCTGCCCTAAAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTTCTCACGGTGACAGCCCAGTTAGGCCACCTGCCCTAAAGTCC  600

seq1  AGACTGACCTGGATATTTCTGCTCTCTGGCTGCTGCTGCTGCTGCTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCTGGATATTTCTGCTCTCTGGCTGCTGCTGCTGCTGCTGCTG  650

seq1  CTGCTGCTGCTGCTGCTGCTGCCGTTCCCAAAGCAAAGTGTGGTTTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCTGCTGCTGCTGCCGTTCCCAAAGCAAAGTGTGGTTTCTCA  700

seq1  AAGTGTGGTTCTGAAACCACGTCCTGGTGCTAGGGAGCCAGATTCCTCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGTTCTGAAACCACGTCCTGGTGCTAGGGAGCCAGATTCCTCGT  750

seq1  CCCTGGATGACTTGGAGGAGGCCAGAAATCTAGTGCTTCAAACATTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGACTTGGAGGAGGCCAGAAATCTAGTGCTTCAAACATTTCTC  800

seq1  TAAGAACACACTGGGCGACAGCTGTAAATGTAGGCAGGTGTGTGTGTGCA  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAGAACACACTGGGCGACAGCTGTAAATGTAGGCAGTTGTGTGTGTGCA  850

seq1  CGCATGCATGTGTTTTGCACACATGAGCTCCCG-TGTGGAGGAGAA-GGT  898
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  CGCATGCATGTGTTTTGCACACATGAGCTCCCGTTGTGGAGGAGAAGGGT  900

seq1  GGAATGCCAGGCATCTTCCTCTGTTGTCCAGCTTCTTGCCTCAAGACAGG  948
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  GGAATGCCAGGCATTTTCCTCTG-TGTCCAGCTTCTTGCCTCAAGACAGG  949

seq1  GTCTCTCACTGAACTGGAAGCTCTATGTTTTGTCTAGGCTTGATGGCCAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTCTCACTGAACTGGAAGCTCTATGTTTTGTCTAGGCTTGATGGCCAT  999

seq1  TGAGCCAGCCAAATCCTCCTGTCTC-TGCTCCTTAA-TGCTGGTTTTACA  1046
        |||||||||| ||||| | |||| ||| |||||| |||||| ||||||
seq2  GAAGCCAGCCAATTCCTCTTTTCTCTTGCCCCTTAATTGCTGG-TTTACA  1048

seq1  GGCATGCACAGC-TGTGCCTGGCTGTTTCTGTGCATGCCTGAGATTCAAT  1095
      |||||||||||| ||||||| |  |||||||||||||||||||| |||||
seq2  GGCATGCACAGCTTGTGCCTTGGCGTTTCTGTGCATGCCTGAGAATCAAT  1098

seq1  TTCAGACCCACACT-CTCACCACCTAGACACCCTACGTAAGCTCTCTAT  1143
      |||| ||||| ||| |||||   ||| ||||||||||||||| ||||||
seq2  TTCAAACCCA-ACTCCTCAC--ACTATACACCCTACGTAAGC-CTCTAT  1143