BAC Information

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BAC

Clone NameB6Ng01-074E08
Chromosome1 (Build37)
Map Location 93,950,104 - 94,137,311
singlet/doubletdoublet
Overlap geneHdac4
Upstream geneLrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2
Downstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074E08.bB6Ng01-074E08.g
ACCDH891165DH891166
length1,193811
definitionDH891165|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E08, 5' end.DH891166|Mus musculus domesticus DNA, BAC clone: B6Ng01-074E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,950,104 - 93,951,311)(94,136,501 - 94,137,311)
sequence
gaattctttcaaagaatgtcttacactcccaagaaaaactccaatttgag
cactccaccaaagcagcagctggtggcaaagaaacagtcagggcagcttc
cagccctaataattcttgctacaaaatagcaaggcttgagtgtcatcacc
agaactttcatgagttcataaaacaaggaatggtctagaaatgaaacgag
actggcaatgagagggactgcctgggcactttacctactcaagtgaaagg
atgtctgctcagatgagacacacagcttgtcagaaaataggtaaggtcag
gaatacagcacaactaataaccgcaagaagacacttaaaacatttctgtt
gtatagtataaaaatgcaacattaaagatatttcacatcaattttcaagt
tttttttagctcaatcttatttgttctgtgaggcttctacataggcataa
aaccatgctacacacactctgcccttcaatactataaagatgtgttaaac
atgccaggaaattaagggagcatggtacgggggtcgaggaggtgtggtaa
cccttattgatagaccatgctggagcagagaaggaaaccaagggtgacag
gcacggcaaacagtggttcttgagctggcgattcattgcaacatcctacg
ccatcttcagctagtcagtgtgacattaagagatgacatttatcatggaa
ctactaaaaagctgacacatatttgagctcagtgagaactctgcaggaaa
gcattaccatccgtgcctgagaaacaagaaaacaaaacgcaggtactcag
caaaggagctcatacagcaacagcagcagacgggaggcaggtcaggccag
gccacagcactgcaagccacaacccatcctcacactagactctcaaagag
caggtgcgctgttcattgcagaaagatgaacacaaagcctacttctttgg
gtttcttagaaactatgtttgtttatcctttttttccacggtccatcagg
catgtaagaaactctatctcattccacactgggcaagactaggaactatc
tcaaacgcccaaactatggcagcgttagaacaaatgacttcagcaaacta
tactgaggaaaggtaggttaaaacttctcaaacagtcgactttaagctgg
acgtgtccatgaaattaggtcccttgtcctacttctgctcagt
gaattcaatcctaacgcaatccatggaagctgatctgggactacctagga
gccgaaggaaacggactcagttggtcatggcccagggtgaggctggatag
tgttcatctctccattatcctcctcttcctttggatccctacccctgcat
tgcttcttccaaggactcacagataaagagtaatggctgggtcagtcccc
cctaggctgtgagtggggcctggtgaagcaagaccagcgattccagggtg
ggtgacagccctcagctcaaaacagattgtgttcaggtctgtgcttattg
aaatggtgggggtggcaggcacgtgagacttgagctcatctttgtaagat
ctcggggtggaaacacataatcttttaattaaaattttactgaattttaa
cttgaatttcccatctgccaccctaattatgcctaaccctaaacctaact
tagagccatctgtgttcttatctcattatcctggggttatttgtgtgctt
gtccaattcctgcaggaaacagtgagtccctcaccaaatctgggcatctt
agatcttaagaaccaaacagatgtcccgagcgatggatctcaggaatggt
tcagtgggcaactgctccatccatgggttttcagtcagatggacaaatgg
gtgtgaggacaagctggatagtcgtgtgaactctccagccattggtcaag
ctgggcttgatgtcatgattattgggccatggcaacatgctggctataag
agtgttctctcgtatagtgtagattattcttgtgtaaattgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93950104_93951311
seq2: B6Ng01-074E08.b_49_1241

seq1  GAATTCTTTCAAAGAATGTCTTACACTCCCAAGAAAAACTCCAATTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAAAGAATGTCTTACACTCCCAAGAAAAACTCCAATTTGAG  50

seq1  CACTCCACCAAAGCAGCAGCTGGTGGCAAAGAAACAGTCAGGGCAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACCAAAGCAGCAGCTGGTGGCAAAGAAACAGTCAGGGCAGCTTC  100

seq1  CAGCCCTAATAATTCTTGCTACAAAATAGCAAGGCTTGAGTGTCATCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTAATAATTCTTGCTACAAAATAGCAAGGCTTGAGTGTCATCACC  150

seq1  AGAACTTTCATGAGTTCATAAAACAAGGAATGGTCTAGAAATGAAACGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCATGAGTTCATAAAACAAGGAATGGTCTAGAAATGAAACGAG  200

seq1  ACTGGCAATGAGAGGGACTGCCTGGGCACTTTACCTACTCAAGTGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAATGAGAGGGACTGCCTGGGCACTTTACCTACTCAAGTGAAAGG  250

seq1  ATGTCTGCTCAGATGAGACACACAGCTTGTCAGAAAATAGGTAAGGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCTCAGATGAGACACACAGCTTGTCAGAAAATAGGTAAGGTCAG  300

seq1  GAATACAGCACAACTAATAACCGCAAGAAGACACTTAAAACATTTCTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGCACAACTAATAACCGCAAGAAGACACTTAAAACATTTCTGTT  350

seq1  GTATAGTATAAAAATGCAACATTAAAGATATTTCACATCAATTTTCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTATAAAAATGCAACATTAAAGATATTTCACATCAATTTTCAAGT  400

seq1  TTTTTTTAGCTCAATCTTATTTGTTCTGTGAGGCTTCTACATAGGCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAGCTCAATCTTATTTGTTCTGTGAGGCTTCTACATAGGCATAA  450

seq1  AACCATGCTACACACACTCTGCCCTTCAATACTATAAAGATGTGTTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCTACACACACTCTGCCCTTCAATACTATAAAGATGTGTTAAAC  500

seq1  ATGCCAGGAAATTAAGGGAGCATGGTACGGGGGTCGAGGAGGTGTGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGAAATTAAGGGAGCATGGTACGGGGGTCGAGGAGGTGTGGTAA  550

seq1  CCCTTATTGATAGACCATGCTGGAGCAGAGAAGGAAACCAAGGGTGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATTGATAGACCATGCTGGAGCAGAGAAGGAAACCAAGGGTGACAG  600

seq1  GCACGGCAAACAGTGGTTCTTGAGCTGGCGATTCATTGCAACATCCTACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGCAAACAGTGGTTCTTGAGCTGGCGATTCATTGCAACATCCTACG  650

seq1  CCATCTTCAGCTAGTCAGTGTGACATTAAGAGATGACATTTATCATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCAGCTAGTCAGTGTGACATTAAGAGATGACATTTATCATGGAA  700

seq1  CTACTAAAAAGCTGACACATATTTGAGCTCAGTGAGAACTCTGCAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAAAAGCTGACACATATTTGAGCTCAGTGAGAACTCTGCAGGAAA  750

seq1  GCATTACCATCCGTGCCTGAGAAACAAGAAAACAAAACGCAGGTACTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCATCCGTGCCTGAGAAACAAGAAAACAAAACGCAGGTACTCAG  800

seq1  CAAAGGAGCTCATACAGCAACAGCAGCAGACGGGAGGCAGGTCAGGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGCTCATACAGCAACAGCAGCAGACGGGAGGCAGGTCAGGCCAG  850

seq1  GCCACAGCACTGCAAGCCACAACCCATCCTCACACTAGACTCTCAAAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCACTGCAAGCCACAACCCATCCTCACACTAGACTCTCAAAGAG  900

seq1  CAGGGTGCGCTGTTCATTGCAGAAAGATGAACACAAAGCCTACTTCTTTG  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GGTGCGCTGTTCATTGCAGAAAGATGAACACAAAGCCTACTTCTTTG  949

seq1  GTTTTCTTAGAAACTATGTTTGTTTATCCTTTTTTTTCCACGGTCCATCA  1000
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTTTCTTAGAAACTATGTTTGTTTATCC-TTTTTTTCCACGGTCCATCA  998

seq1  GGGCATGTAAGAAACTCTTATCTCATTCCACACTGGGCAAGAACTAGGAA  1050
       |||||||||||||||| ||||||||||||||||||||||| |||||| |
seq2  -GGCATGTAAGAAACTC-TATCTCATTCCACACTGGGCAAG-ACTAGG-A  1044

seq1  ACTATCTCCAAACGCCCAAACTATGGCAGCGTTAGACAAAATGACTTCAG  1100
      ||||||| ||||||||||||||||||||||||||||  ||||||||||||
seq2  ACTATCT-CAAACGCCCAAACTATGGCAGCGTTAGAACAAATGACTTCAG  1093

seq1  CAAACTATACTTGAGGGAAAGTGTAAGTTAAAACTTCTCAAAACAGTCAG  1150
      |||||||||| ||| |||||| ||| ||||||||||||| |||||||| |
seq2  CAAACTATAC-TGA-GGAAAG-GTAGGTTAAAACTTCTC-AAACAGTC-G  1138

seq1  ACTTTAAGCTGGACGTGCCCATGAAATATTTAGTCCCCTGCTCCTACTTC  1200
      ||||||||||||||||| ||||||||   ||||  ||||  |||||||||
seq2  ACTTTAAGCTGGACGTGTCCATGAAA---TTAGGTCCCTTGTCCTACTTC  1185

seq1  TGCTCAGT  1208
      ||||||||
seq2  TGCTCAGT  1193

seq1: chr1_94136501_94137311
seq2: B6Ng01-074E08.g_68_878 (reverse)

seq1  CACACACACACACACACACACAATTTACACAAGAATAATCTACACTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACAATTTACACAAGAATAATCTACACTATAC  50

seq1  GAGAGAACACTCTTATAGCCAGCATGTTGCCATGGCCCAATAATCATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACACTCTTATAGCCAGCATGTTGCCATGGCCCAATAATCATGAC  100

seq1  ATCAAGCCCAGCTTGACCAATGGCTGGAGAGTTCACACGACTATCCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCCAGCTTGACCAATGGCTGGAGAGTTCACACGACTATCCAGCT  150

seq1  TGTCCTCACACCCATTTGTCCATCTGACTGAAAACCCATGGATGGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCACACCCATTTGTCCATCTGACTGAAAACCCATGGATGGAGCAG  200

seq1  TTGCCCACTGAACCATTCCTGAGATCCATCGCTCGGGACATCTGTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCACTGAACCATTCCTGAGATCCATCGCTCGGGACATCTGTTTGGT  250

seq1  TCTTAAGATCTAAGATGCCCAGATTTGGTGAGGGACTCACTGTTTCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGATCTAAGATGCCCAGATTTGGTGAGGGACTCACTGTTTCCTGC  300

seq1  AGGAATTGGACAAGCACACAAATAACCCCAGGATAATGAGATAAGAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGGACAAGCACACAAATAACCCCAGGATAATGAGATAAGAACAC  350

seq1  AGATGGCTCTAAGTTAGGTTTAGGGTTAGGCATAATTAGGGTGGCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCTAAGTTAGGTTTAGGGTTAGGCATAATTAGGGTGGCAGATG  400

seq1  GGAAATTCAAGTTAAAATTCAGTAAAATTTTAATTAAAAGATTATGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCAAGTTAAAATTCAGTAAAATTTTAATTAAAAGATTATGTGTT  450

seq1  TCCACCCCGAGATCTTACAAAGATGAGCTCAAGTCTCACGTGCCTGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCGAGATCTTACAAAGATGAGCTCAAGTCTCACGTGCCTGCCAC  500

seq1  CCCCACCATTTCAATAAGCACAGACCTGAACACAATCTGTTTTGAGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCATTTCAATAAGCACAGACCTGAACACAATCTGTTTTGAGCTGA  550

seq1  GGGCTGTCACCCACCCTGGAATCGCTGGTCTTGCTTCACCAGGCCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCACCCACCCTGGAATCGCTGGTCTTGCTTCACCAGGCCCCACT  600

seq1  CACAGCCTAGGGGGGACTGACCCAGCCATTACTCTTTATCTGTGAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTAGGGGGGACTGACCCAGCCATTACTCTTTATCTGTGAGTCCT  650

seq1  TGGAAGAAGCAATGCAGGGGTAGGGATCCAAAGGAAGAGGAGGATAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGCAATGCAGGGGTAGGGATCCAAAGGAAGAGGAGGATAATGG  700

seq1  AGAGATGAACACTATCCAGCCTCACCCTGGGCCATGACCAACTGAGTCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAACACTATCCAGCCTCACCCTGGGCCATGACCAACTGAGTCCG  750

seq1  TTTCCTTCGGCTCCTAGGTAGTCCCAGATCAGCTTCCATGGATTGCGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCGGCTCCTAGGTAGTCCCAGATCAGCTTCCATGGATTGCGTTA  800

seq1  GGATTGAATTC  811
      |||||||||||
seq2  GGATTGAATTC  811