BAC Information

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BAC

Clone NameB6Ng01-074J14
Chromosome1 (Build37)3 (Build37)
Map Location 41,155,615 - 41,156,022122,429,717 - 122,430,617
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J14.bB6Ng01-074J14.g
ACCDH891398DH891399
length409900
definitionDH891398|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J14, 5' end.DH891399|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,155,615 - 41,156,022)(122,429,717 - 122,430,617)
sequence
cttaagaatcttagacaatgtgtttcgatcctatctaccctccactcctt
ccctaactcctcccagatccacccctcctccccacttcctatcttctttt
gaaaaaaaacttttttaatttttgaatttataaatataattatagcattt
tcctctcctgtttcctccttctaagcatctctatatacccttccttgctt
gtattcaaattcacaacctttttttcccattgttagaacgtggtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcacgcatgcgc
atgcatattgttgttccacctatagggttgcagacccctttggtattgga
caatcaactagtgtgctggagaagatggtttctccttcctccaccattct
ttatttctc
gaattctcttcaatattgctatctccttatttaatcctgatttcaaaccc
taaattgtctttgtaatttctttcaggtatatattgctattttcttgaat
gtcactcaggcatttattgttatctcaaagttcaatgtggcgcctgtgtc
ttctttaattttcttgaattctttgataaagtttatgattgttcttttaa
atgttgtgttctgaggttcatcgaagtaattcttagtagaaaacatttct
ataggactactgtgttcgaagggacacatagcatcttggctgtttatatt
gtgcttgtaatgtgacttgtgagtgtgaccttctttctttggttgtgttt
gaggtaagaatttgtcctgtcttagactgggccggtgcagtggctgggtg
acttagctggcgcatgaattctttgattggactagaacgagcaaaggtgg
tattggaaccttgtcctgcactagccctgtgggtgtggatatggcgagac
tggtgggacagaggaggagagatttatcaggcaaagctggctgttggcca
caggtctggaggtagaagtggagatagcagagaagagagggaagaaatga
cttaaccagcaaagacagctttggaactgaaccccaacttatggaataga
aggaaggactctttttattggatattttctttatttgcatttcaaatatt
gtcaccccctgcccccgaagccccctatcccattccccctcctcctgcat
ctatgaggctgttccccaacccacccacttctgcctactcgccctagcct
acaggaccaagggcctcctcttctccgttgatgtccgacaaggccatcct
ctgctacatatgaggctggagccatgggtcccttcatatgtactccttgg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41155615_41156022
seq2: B6Ng01-074J14.b_102_369

seq1  TAACTCCTCCCAGATCCACCCTGCCACCTCCCCTCTCCCTCCCAACTCCA  50
      ||||||||||||||||||||   || ||||||| ||   ||| | || | 
seq2  TAACTCCTCCCAGATCCACC---CCTCCTCCCCACT---TCCTATCTTCT  44

seq1  TGCCCTTAAAAAAAAC-CATGCAATTCATGTATGTGTGTGTGT-----GT  94
      |    | |||||||||   |  ||||  || || | |   | |       
seq2  T---TTGAAAAAAAACTTTTTTAATTTTTGAATTTATAAATATAATTATA  91

seq1  GCGTGTGCGTGT------------------GCGTGTGTGT----------  116
      || | | | | |                  || | | | |          
seq2  GCATTTTCCTCTCCTGTTTCCTCCTTCTAAGCATCTCTATATACCCTTCC  141

seq1  GTGTGTGTGTGCATGTGTGAGTGTGTGTGTGTGCGTGTGT------GTGT  160
       ||  ||| | ||  | | |     | | | | |   |||      ||| 
seq2  TTGCTTGTATTCAAAT-TCACAACCTTTTTTTCCCATTGTTAGAACGTG-  189

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCATGTGTGTAGGTAG  210
      |||||||||||||||||||||||||||||| ||||  |||||| | | | 
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCAC  239

seq1  GTAGGTAGGTAGAGGACAGCTTATGGGAGTCTGTTCTTTTCCTTCCTCAT  260
      | | |         |   || |||       |||| ||   |  |||   
seq2  GCATG--------CGCATGCATAT-------TGTTGTT---CCACCT---  268

seq1  GTGGGTCCTGGGGATTGAAGTCAGGTTTTCTGACTCAGCAGTCAAGTGTC  310
                                                        
seq2  --------------------------------------------------  268

seq1  TTCACCTCCTGAGTGATCTCACTTGCTGCCACTTTTGCTTTTGTTTTTGT  360
                                                        
seq2  --------------------------------------------------  268

seq1  TTTTGTTTTTTACATCATTTTTGTTCTTCATTCTCTGTTGTTCCACCT  408
                                                      
seq2  ------------------------------------------------  268

seq1: chr3_122429717_122430617
seq2: B6Ng01-074J14.g_67_966

seq1  GAATTCTCTTCAATATTGCTATCTCCTTATTTAATCCTGATTTCAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCAATATTGCTATCTCCTTATTTAATCCTGATTTCAAACCC  50

seq1  TAAATTGTCTTTGTAATTTCTTTCAGGTATATATTGCTATTTTCTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTCTTTGTAATTTCTTTCAGGTATATATTGCTATTTTCTTGAAT  100

seq1  GTCACTCAGGCATTTATTGTTATCTCAAAGTTCAATGTGGCGCCTGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAGGCATTTATTGTTATCTCAAAGTTCAATGTGGCGCCTGTGTC  150

seq1  TTCTTTAATTTTCTTGAATTCTTTGATAAAGTTTATGATTGTTCTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATTTTCTTGAATTCTTTGATAAAGTTTATGATTGTTCTTTTAA  200

seq1  ATGTTGTGTTCTGAGGTTCATCGAAGTAATTCTTAGTAGAAAACATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGTTCTGAGGTTCATCGAAGTAATTCTTAGTAGAAAACATTTCT  250

seq1  ATAGGACTACTGTGTTCGAAGGGACACATAGCATCTTGGCTGTTTATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACTACTGTGTTCGAAGGGACACATAGCATCTTGGCTGTTTATATT  300

seq1  GTGCTTGTAATGTGACTTGTGAGTGTGACCTTCTTTCTTTGGTTGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGTAATGTGACTTGTGAGTGTGACCTTCTTTCTTTGGTTGTGTTT  350

seq1  GAGGTAAGAATTTGTCCTGTCTTAGACTGGGCCGGTGCAGTGGCTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAAGAATTTGTCCTGTCTTAGACTGGGCCGGTGCAGTGGCTGGGTG  400

seq1  ACTTAGCTGGCGCATGAATTCTTTGATTGGACTAGAACGAGCAAAGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTGGCGCATGAATTCTTTGATTGGACTAGAACGAGCAAAGGTGG  450

seq1  TATTGGAACCTTGTCCTGCACTAGCCCTGTGGGTGTGGATATGGCGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAACCTTGTCCTGCACTAGCCCTGTGGGTGTGGATATGGCGAGAC  500

seq1  TGGTGGGACAGAGGAGGAGAGATTTATCAGGCAAAGCTGGCTGTTGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGACAGAGGAGGAGAGATTTATCAGGCAAAGCTGGCTGTTGGCCA  550

seq1  CAGGTCTGGAGGTAGAAGTGGAGATAGCAGAGAAGAGAGGGAAGAAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGGAGGTAGAAGTGGAGATAGCAGAGAAGAGAGGGAAGAAATGA  600

seq1  CTTAACCAGCAAAGACAGCTTTGGAACTGAACCCCAACTTATGGAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCAGCAAAGACAGCTTTGGAACTGAACCCCAACTTATGGAATAGA  650

seq1  AGGAAGGACTCTTTTTATTGGATATTTTCTTTATTTGCATTTCAAATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGACTCTTTTTATTGGATATTTTCTTTATTTGCATTTCAAATATT  700

seq1  GTCACCCCCTGCCCCCGAAGCCCCCTATCCCATTCCCCCTCCTCCTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCCTGCCCCCGAAGCCCCCTATCCCATTCCCCCTCCTCCTGCAT  750

seq1  CTATGAGGCTGTTCCCCAACCCACCCACTTCTGCCTACTCGCCCTAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGGCTGTTCCCCAACCCACCCACTTCTGCCTACTCGCCCTAGCCT  800

seq1  ACAGGACCAAGGGCCTCCTCTTCTTCCGTTGATGTCCGACAAGGCCATCC  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAGGACCAAGGGCCTCCTCTTC-TCCGTTGATGTCCGACAAGGCCATCC  849

seq1  TCTGCTACATATGAGGCTGGAGCCATGGGTCCCTTCATATGTACTCCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTACATATGAGGCTGGAGCCATGGGTCCCTTCATATGTACTCCTTG  899

seq1  G  901
      |
seq2  G  900