BAC Information

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BAC

Clone NameB6Ng01-074L08
Chromosome1 (Build37)
Map Location 89,953,070 - 89,954,226
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a10
Upstream geneLOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneUgt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074L08.bB6Ng01-074L08.g
ACCDH891477DH891478
length1,1571,047
definitionDH891477|Mus musculus domesticus DNA, BAC clone: B6Ng01-074L08, 5' end.DH891478|Mus musculus domesticus DNA, BAC clone: B6Ng01-074L08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatataggtgacttattgaaatggatgtgtacaggtgtgagata
tttatatataaattccaaggtacaatcaaattttcaatttacatgtatac
cttcacattgtgtgtgtaggtcatgataagtaaggggagaggaaagaaaa
ctttcctgagtaggagcaagggcagtaatgatagacatgccacttcaaca
cagaagcaggactattcaggggcaggaagagaacatgtggaggtaaggct
gggcagctggggagtgtagtgaaccagaggaaagcaacacacatctgaaa
atgccataatgccaccggatcatttgtattctaacctagaagaggaattt
agagagacgaacaagaacaagaacaagaacaagaacaagaacaagaacaa
gaacaagaacaagaacaagaacaagaacaagaacaagaacaaaacccctt
caagctgcattttaatgtttttgtaaacattgacaaaacacttcaagcct
tggagcagcattcagtatgtgtaggttgttctctataggagtactcatac
agattgccaaacttcaaaagttattgatatgatacctaggatgtaatgtc
tgtcagtttcttgtttttaagaacacaccagataaaacagaaatttacat
ttcagtgctggacaattcaacagaaaaatcaatgtggcccaagactaggc
acaagaatcatagtattctcatataccagattgtgggaaccacttgttga
cacattcagagttccataacagtactatactgaaaactaaagtacatcca
tctgcagctgacctggtgcaaccccatgttggccctgtgtgcactgtgtc
agtatctgtgagttcatttgagctttgctgagttgttttagagggctttg
tttttctggtgccctgtgtcaattccttctccccaattcttcctgcttcc
tcctccttggagttccctgagctctgacggaagggatttggatggagata
tctcctttagagctgttgtattccagggtctgtctccctgaattgtctgc
tgtgggtcttttggtgtttgttcccatctgctgcagagaagcagctatgc
cgatgctgattagacctgactatgactcagccagaatacaagttgagagt
caattta
gaattctacgcatctcgaccttttgctgacgaagggcttctccacctgga
tttcctctgcattttcctactttaaggagtgggtgggggtaggcttgttt
gccgtgattctatgcggtggagcgttgcttttgctctagatggtctgtaa
acttaaagcccaaacaaaaagggacaagatggtgatagcccaagcacttg
cagcattagaacacagtacctcccctgatatatggttatctatacttaag
caataggttgctggccgctcagctcttgtaccccacaaggctagtctcat
tgcatgggatagagtgagtgtgcttcagcagcccgagagagttgcacggc
taagcactgcaatagaaaggctctgtggcataaaatgagcctattctagg
gagacatgtcatcttgtatgaaggttgagtgtccaagtgtccttccccct
ggaaaaacgacacgggagcggaccaagacccctccgggtgacgagcctgg
gagaaggatttgtgtaatgcccctatttttgcacactggggatttgacct
ctatctccactctcagtactgggtggcctgttgccttttaaataaaagaa
aagggggggggaggatgtgaggagccgcccttacaatcgccattacaaga
tggcactgatatccggtgttctaactggtaaacaaatagtctgcgtatgt
gctggggtatttttccattccttgtgccctgcctgtcccgtggcatcatc
tgggctgatagtgagcagtcagtcagggtgaaatacgtctccaacccctc
ttgtgatctatgtaaggaccgagtttcctgtgttctgggcctcctccccc
agaagctaatcatcttttctctcgagatggattaaagctatgctgcagaa
gatctgagtgtgttcctgtgtgtgtgtgtccttgctggtgagacttatca
ttcacagacacacctagctccaaatcttcagatgtcagagatataagggg
gataccactgagccaggaataaaaggtctcttgtggttgagagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_89953070_89954226
seq2: B6Ng01-074L08.b_46_1202

seq1  GAATTCCATATAGGTGACTTATTGAAATGGATGTGTACAGGTGTGAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATAGGTGACTTATTGAAATGGATGTGTACAGGTGTGAGATA  50

seq1  TTTATATATAAATTCCAAGGTACAATCAAATTTTCAATTTACATGTATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATATAAATTCCAAGGTACAATCAAATTTTCAATTTACATGTATAC  100

seq1  CTTCACATTGTGTGTGTAGGTCATGATAAGTAAGGGGAGAGGAAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATTGTGTGTGTAGGTCATGATAAGTAAGGGGAGAGGAAAGAAAA  150

seq1  CTTTCCTGAGTAGGAGCAAGGGCAGTAATGATAGACATGCCACTTCAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAGTAGGAGCAAGGGCAGTAATGATAGACATGCCACTTCAACA  200

seq1  CAGAAGCAGGACTATTCAGGGGCAGGAAGAGAACATGTGGAGGTAAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAGGACTATTCAGGGGCAGGAAGAGAACATGTGGAGGTAAGGCT  250

seq1  GGGCAGCTGGGGAGTGTAGTGAACCAGAGGAAAGCAACACACATCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCTGGGGAGTGTAGTGAACCAGAGGAAAGCAACACACATCTGAAA  300

seq1  ATGCCATAATGCCACCGGATCATTTGTATTCTAACCTAGAAGAGGAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAATGCCACCGGATCATTTGTATTCTAACCTAGAAGAGGAATTT  350

seq1  AGAGAGACGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAA  400

seq1  GAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAAACCCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGAACAAGAACAAGAACAAGAACAAGAACAAGAACAAAACCCCTT  450

seq1  CAAGCTGCATTTTAATGTTTTTGTAAACATTGACAAAACACTTCAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCATTTTAATGTTTTTGTAAACATTGACAAAACACTTCAAGCCT  500

seq1  TGGAGCAGCATTCAGTATGTGTAGGTTGTTCTCTATAGGAGTACTCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGCATTCAGTATGTGTAGGTTGTTCTCTATAGGAGTACTCATAC  550

seq1  AGATTGCCAAACTTCAAAAGTTATTGATATGATACCTAGGATGTAATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCCAAACTTCAAAAGTTATTGATATGATACCTAGGATGTAATGTC  600

seq1  TGTCAGTTTCTTGTTTTTAAGAACACACCAGATAAAACAGAAATTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTTTCTTGTTTTTAAGAACACACCAGATAAAACAGAAATTTACAT  650

seq1  TTCAGTGCTGGACAATTCAACAGAAAAATCAATGTGGCCCAAGACTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTGGACAATTCAACAGAAAAATCAATGTGGCCCAAGACTAGGC  700

seq1  ACAAGAATCATAGTATTCTCATATACCAGATTGTGGGAACCACTTGTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATCATAGTATTCTCATATACCAGATTGTGGGAACCACTTGTTGA  750

seq1  CACATTCAGAGTTCCATAACAGTACTATACTGAAAACTAAAGTACATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAGAGTTCCATAACAGTACTATACTGAAAACTAAAGTACATCCA  800

seq1  TCTGCAGCTGACCTGGTGCAACCCCATGTTGGCCCTGTGTGCACTGTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTGACCTGGTGCAACCCCATGTTGGCCCTGTGTGCACTGTGTC  850

seq1  AGTATCTGTGAGTTCATTTGAGCTTTGCTGAGTTGTTTTAGAGGGCTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTGTGAGTTCATTTGAGCTTTGCTGAGTTGTTTTAGAGGGCTTTG  900

seq1  TTTTTCTGGTGCCCTGTGTCAATTCCTTCTCCCCAATTCTTCCTGCTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGGTGCCCTGTGTCAATTCCTTCTCCCCAATTCTTCCTGCTTCC  950

seq1  TCCTCCTTGGAGTTCCCTGAGCTCTGACGGAAGGGATTT-GATGGAGATA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCTCCTTGGAGTTCCCTGAGCTCTGACGGAAGGGATTTGGATGGAGATA  1000

seq1  TCTCCTTTAGAGCTG-TGTATTCCAGGGTCTGTCTCCCTGAAATGTCTTG  1048
      ||||||||||||||| |||||||||||||||||||||||||| |||| ||
seq2  TCTCCTTTAGAGCTGTTGTATTCCAGGGTCTGTCTCCCTGAATTGTC-TG  1049

seq1  CTGTGGGTCTCT--GTGTTTG-TCCCATCTGCTGCAAGAGGAAGCAGCTA  1095
      |||||||||| |  ||||||| ||||||||||||| ||| ||||||||||
seq2  CTGTGGGTCTTTTGGTGTTTGTTCCCATCTGCTGC-AGA-GAAGCAGCTA  1097

seq1  TGCCGATGGCTGAATAAGACCCTGACTATGACTCCAGCAGAATACCAG-T  1144
      ||||||| |||| || ||| ||||||||||||||   |||||||| || |
seq2  TGCCGAT-GCTG-ATTAGA-CCTGACTATGACTCAGCCAGAATACAAGTT  1144

seq1  GAGAGTCATTTTA  1157
      |||||||| ||||
seq2  GAGAGTCAATTTA  1157