BAC Information

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BAC

Clone NameB6Ng01-074M08
Chromosome1 (Build37)
Map Location 99,682,333 - 99,795,426
singlet/doubletdoublet
Overlap geneZh2c2, Pam
Upstream geneSlco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1
Downstream geneLOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074M08.bB6Ng01-074M08.g
ACCDH891524DH891525
length1,1851,128
definitionDH891524|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M08, 5' end.DH891525|Mus musculus domesticus DNA, BAC clone: B6Ng01-074M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,682,333 - 99,683,511)(99,794,261 - 99,795,426)
sequence
gaattctgtactcagtccatgtgaatccaagtattccaagtcacttggcc
tgctttctgccctctgtgtacagagtgccgatactgactttaaagtgtgc
ttagaacacatgaggagtccatgcttcagctcaggagcagttcaataata
gcattgccataatctaatcagcgtgtgccgttatattcaaggcctgtcat
gattattctttgcattatagatggagaacaacaattcggatgaactgagt
aaaagcaaagttgttaaaaagaaagcaaagcagttaaatccctttcattt
gaaagtgggtcatgaggttttacgacagaggaagaactggtggaaggatg
gccgcttccagtctgagtgggtcgggccttgtgtcatcgactacattaca
gaaagtggatgtgctgtcctcagagataacacgggaaccagactcaaacg
acctatcaaaatgtcccaccttaggccctatgtgagagagtccagtgagc
agggtaagtatctgctacctctctagggtgttagtttccacaagaaagat
tagactttcaacctaccttccttccttccttccttccttccttccttcgg
ttaaaatcctctccatctaagttttataaaacttgatggtcttacttctc
tccaggagtctgattagaatgtactttcataaactcatttttctttttag
ttttttgttgaaaatagatttttatacaatatattctgattatctttttt
tcatccaatatattctgattacctttttcccttctctaactacctcagat
cctccccaccccccccccccaccctcatccactctttttctttctctttc
attagggaaacaaagcatgtaagattgattaatgagtgattgattgattg
atgttggttatataatataaagcaaacaatgcaggatttttgtcttggat
tctactggggcttttcataactgctaatgaaaaatgctggaccctgtttc
acataaggaacgattccatcttggagtttgcatactatcctcttacctgc
tggctcatttttatgggtgaaaaggtagcagctcagatcattatcggcca
agaggaagcaagggtggtcaggatcctagctgtggaataactagggaact
ttggaactgggtttcttaatgttggcttcaagtca
gaattcattttagctcacagttcaaggggcgaccctcatggtagaaaaat
cagagctgcagaagcttgacacagctgtacttatcaaattcaccaacttc
acacatgtctctgcaataaagatgatgcagaacacagcaacacttgcctc
tgtgcctctgtgtctgccctctgggtacaaggtagagtgaggaggccgtc
tgtattcacccttgggattcgttggaggttgtgggaactgatgatgggga
atctcccgtgaagtacttcatagaacaagtgtcgcacaagctgatgtttt
aaccagtactcgttaagaatccattaaagcaccctgctttgagatctgtt
tccacatgttcgtatttttttttccatttttttattaggtatttcgctca
tttacatttacatgttcgtatttaacatgtgtttgtgtttggtgttgttc
tttttttcagataatcacaaagactgttccggtgtgtccttacatctcac
acgtgtgccgtaagtgcccgcaggtttttcagataagatcttaagagatt
tttagttatctgatgtagaagattaattagcccaaaatgactgttgcctc
aaatcaatatttattatctcagtatcaggggtctgggcagctgtcttatg
aaaggcttcagtgaaaagctagagtcgttgttaggttcagccatgaaaga
gtcacctccagtctctcacatagtggtcaacagggaggagacatggtatg
ggattgaccagcccagagtgtgcagtgctaacaggaattcaggacaggat
tgatacagttgcatcaaatgtaaactaacaacaatgataaataatttgaa
ataataataaatcaagggcttgttcaaaagatgggacttgagccatttgt
tatttaatgacgtaatcttgtcatcaccctggctatatttgttagacgtc
actttctacacttatattgccaacagtcaagggagagacattaaacaaga
acatgtgcatgacactctgaatcatgacaccctgttaagtcgccaaagaa
gcctgaattctaaagatggcagtagatggagaaaggaagggaagaaaaga
ggggaagaagaaggggaagggtagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99682333_99683511
seq2: B6Ng01-074M08.b_45_1229

seq1  GAATTCTGTACTCAGTCCATGTGAATCCAAGTATTCCAAGTCACTTGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTACTCAGTCCATGTGAATCCAAGTATTCCAAGTCACTTGGCC  50

seq1  TGCTTTCTGCCCTCTGTGTACAGAGTGCCGATACTGACTTTAAAGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTGCCCTCTGTGTACAGAGTGCCGATACTGACTTTAAAGTGTGC  100

seq1  TTAGAACACATGAGGAGTCCATGCTTCAGCTCAGGAGCAGTTCAATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACACATGAGGAGTCCATGCTTCAGCTCAGGAGCAGTTCAATAATA  150

seq1  GCATTGCCATAATCTAATCAGCGTGTGCCGTTATATTCAAGGCCTGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCCATAATCTAATCAGCGTGTGCCGTTATATTCAAGGCCTGTCAT  200

seq1  GATTATTCTTTGCATTATAGATGGAGAACAACAATTCGGATGAACTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTCTTTGCATTATAGATGGAGAACAACAATTCGGATGAACTGAGT  250

seq1  AAAAGCAAAGTTGTTAAAAAGAAAGCAAAGCAGTTAAATCCCTTTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAAAGTTGTTAAAAAGAAAGCAAAGCAGTTAAATCCCTTTCATTT  300

seq1  GAAAGTGGGTCATGAGGTTTTACGACAGAGGAAGAACTGGTGGAAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGTCATGAGGTTTTACGACAGAGGAAGAACTGGTGGAAGGATG  350

seq1  GCCGCTTCCAGTCTGAGTGGGTCGGGCCTTGTGTCATCGACTACATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTTCCAGTCTGAGTGGGTCGGGCCTTGTGTCATCGACTACATTACA  400

seq1  GAAAGTGGATGTGCTGTCCTCAGAGATAACACGGGAACCAGACTCAAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGATGTGCTGTCCTCAGAGATAACACGGGAACCAGACTCAAACG  450

seq1  ACCTATCAAAATGTCCCACCTTAGGCCCTATGTGAGAGAGTCCAGTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCAAAATGTCCCACCTTAGGCCCTATGTGAGAGAGTCCAGTGAGC  500

seq1  AGGGTAAGTATCTGCTACCTCTCTAGGGTGTTAGTTTCCACAAGAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGTATCTGCTACCTCTCTAGGGTGTTAGTTTCCACAAGAAAGAT  550

seq1  TAGACTTTCAACCTACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTTCAACCTACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCGG  600

seq1  TTAAAATCCTCTCCATCTAAGTTTTATAAAACTTGATGGTCTTACTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCTCTCCATCTAAGTTTTATAAAACTTGATGGTCTTACTTCTC  650

seq1  TCCAGGAGTCTGATTAGAATGTACTTTCATAAACTCATTTTTCTTTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGTCTGATTAGAATGTACTTTCATAAACTCATTTTTCTTTTTAG  700

seq1  TTTTTTGTTGAAAATAGATTTTTATACAATATATTCTGATTATCTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGAAAATAGATTTTTATACAATATATTCTGATTATCTTTTTT  750

seq1  TCATCCAATATATTCTGATTACCTTTTTCCCTTCTCTAACTACCTCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAATATATTCTGATTACCTTTTTCCCTTCTCTAACTACCTCAGAT  800

seq1  CCTCCCCA-CCCCCCCCCCCACCCTCATCCACTCTTTTTCTTTCTCTTTC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACCCCCCCCCCCCACCCTCATCCACTCTTTTTCTTTCTCTTTC  850

seq1  ATTA-GGAAAC-AAGCATGTAAGATTGATTAATGAGTGATTGATTGATTG  897
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGAAACAAAGCATGTAAGATTGATTAATGAGTGATTGATTGATTG  900

seq1  ATGTT-GTTATATAATATAAAGCAAACAATGCAGGATTTTTGTCTTGAAT  946
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGTTGGTTATATAATATAAAGCAAACAATGCAGGATTTTTGTCTTGGAT  950

seq1  TCTACT-GTGCTTTTCATAACTGCT-ATGAAAAATGCT-GAACCTGTTTC  993
      |||||| | |||||||||||||||| |||||||||||| || ||||||||
seq2  TCTACTGGGGCTTTTCATAACTGCTAATGAAAAATGCTGGACCCTGTTTC  1000

seq1  ACATAAGGAACGATTCCATCTTGAGTTTTGCATACTATCCTCTTACCTGC  1043
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  ACATAAGGAACGATTCCATCTTGGAGTTTGCATACTATCCTCTTACCTGC  1050

seq1  TGCCTCATTTTTAT--GTGAAAAAGTAGCAGCTCAGATCATTATCGCCAA  1091
      || |||||||||||  ||||||| |||||||||||||||||||||| | |
seq2  TGGCTCATTTTTATGGGTGAAAAGGTAGCAGCTCAGATCATTATCGGCCA  1100

seq1  AGA-GAAGCA--TGTTGTCCAGAATCTAGCTGTGAAATAACTAAGGGAAC  1138
      ||| ||||||   || |||  ||  ||||||||| ||||||| |||||||
seq2  AGAGGAAGCAAGGGTGGTCAGGATCCTAGCTGTGGAATAACT-AGGGAAC  1149

seq1  TTTGAAACTGTGTTTCCTTTTAATGTT-GCTTCATAAAGTCA  1179
      |||| ||||| |||||   |||||||| |||||   ||||||
seq2  TTTGGAACTGGGTTTC---TTAATGTTGGCTTC---AAGTCA  1185

seq1: chr1_99794261_99795426
seq2: B6Ng01-074M08.g_69_1195 (reverse)

seq1  TCCCTCCTTCCCTTTCTTTTTCTTCTTTCTTCCTTTCCTCCTCCCTCCCT  50
                                    ||| | |  ||| |  ||||
seq2  ------------------------------TCCCTAC--CCTTC--CCCT  16

seq1  CTTTCTTCCCTCCTTTCCTTCCCTCCTTTTCTCATCCTACTGCCATCCTT  100
        ||||||||  |||| ||||||| | ||||||   |||||||||| |||
seq2  TCTTCTTCCCCTCTTTTCTTCCCTTCCTTTCTCCATCTACTGCCAT-CTT  65

seq1  TAGAATTCAGGCTTCTTTGGCGACTTTAACAGGGTTGTCATGATTCAGAG  150
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  TAGAATTCAGGCTTCTTTGGCGAC-TTAACAGGG-TGTCATGATTCAGAG  113

seq1  TTGTCATGCACATGTTCTTGTTTAATGTTCTCTCCCTTGACTGTTGGCAA  200
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  -TGTCATGCACATGTTCTTGTTTAATG-TCTCTCCCTTGACTGTTGGCAA  161

seq1  TATAAGTGTAGAAAGTGACGTCTAACAAATATAGCCAGGGTGATGACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGTAGAAAGTGACGTCTAACAAATATAGCCAGGGTGATGACAAG  211

seq1  ATTACGTCATTAAATAACAAATGGCTCAAGTCCCATCTTTTGAACAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGTCATTAAATAACAAATGGCTCAAGTCCCATCTTTTGAACAAGCC  261

seq1  CTTGATTTATTATTATTTCAAATTATTTATCATTGTTGTTAGTTTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTATTATTATTTCAAATTATTTATCATTGTTGTTAGTTTACATT  311

seq1  TGATGCAACTGTATCAATCCTGTCCTGAATTCCTGTTAGCACTGCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAACTGTATCAATCCTGTCCTGAATTCCTGTTAGCACTGCACACT  361

seq1  CTGGGCTGGTCAATCCCATACCATGTCTCCTCCCTGTTGACCACTATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTGGTCAATCCCATACCATGTCTCCTCCCTGTTGACCACTATGTG  411

seq1  AGAGACTGGAGGTGACTCTTTCATGGCTGAACCTAACAACGACTCTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGGAGGTGACTCTTTCATGGCTGAACCTAACAACGACTCTAGCT  461

seq1  TTTCACTGAAGCCTTTCATAAGACAGCTGCCCAGACCCCTGATACTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGAAGCCTTTCATAAGACAGCTGCCCAGACCCCTGATACTGAGA  511

seq1  TAATAAATATTGATTTGAGGCAACAGTCATTTTGGGCTAATTAATCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATATTGATTTGAGGCAACAGTCATTTTGGGCTAATTAATCTTCT  561

seq1  ACATCAGATAACTAAAAATCTCTTAAGATCTTATCTGAAAAACCTGCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGATAACTAAAAATCTCTTAAGATCTTATCTGAAAAACCTGCGGG  611

seq1  CACTTACGGCACACGTGTGAGATGTAAGGACACACCGGAACAGTCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACGGCACACGTGTGAGATGTAAGGACACACCGGAACAGTCTTTGT  661

seq1  GATTATCTGAAAAAAAGAACAACACCAAACACAAACACATGTTAAATACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATCTGAAAAAAAGAACAACACCAAACACAAACACATGTTAAATACG  711

seq1  AACATGTAAATGTAAATGAGCGAAATACCTAATAAAAAAATGGAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAAATGTAAATGAGCGAAATACCTAATAAAAAAATGGAAAAAAA  761

seq1  AATACGAACATGTGGAAACAGATCTCAAAGCAGGGTGCTTTAATGGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGAACATGTGGAAACAGATCTCAAAGCAGGGTGCTTTAATGGATTC  811

seq1  TTAACGAGTACTGGTTAAAACATCAGCTTGTGCGACACTTGTTCTATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGAGTACTGGTTAAAACATCAGCTTGTGCGACACTTGTTCTATGAA  861

seq1  GTACTTCACGGGAGATTCCCCATCATCAGTTCCCACAACCTCCAACGAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCACGGGAGATTCCCCATCATCAGTTCCCACAACCTCCAACGAAT  911

seq1  CCCAAGGGTGAATACAGACGGCCTCCTCACTCTACCTTGTACCCAGAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGGTGAATACAGACGGCCTCCTCACTCTACCTTGTACCCAGAGGG  961

seq1  CAGACACAGAGGCACAGAGGCAAGTGTTGCTGTGTTCTGCATCATCTTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGAGGCACAGAGGCAAGTGTTGCTGTGTTCTGCATCATCTTTA  1011

seq1  TTGCAGAGACATGTGTGAAGTTGGTGAATTTGATAAGTACAGCTGTGTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGACATGTGTGAAGTTGGTGAATTTGATAAGTACAGCTGTGTCA  1061

seq1  AGCTTCTGCAGCTCTGATTTTTCTACCATGAGGGTCGCCCCTTGAACTGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGCAGCTCTGATTTTTCTACCATGAGGGTCGCCCCTTGAACTGT  1111

seq1  GAGCTAAAATGAATTC  1166
      ||||||||||||||||
seq2  GAGCTAAAATGAATTC  1127