BAC Information

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BAC

Clone NameB6Ng01-076A20
Chromosome1 (Build37)
Map Location 84,981,222 - 85,041,928
singlet/doubletdoublet
Overlap geneLOC100039695, EG665317
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14
Downstream geneLOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076A20.bB6Ng01-076A20.g
ACCDH892433DH892434
length750766
definitionDH892433|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A20, 5' end.DH892434|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,041,164 - 85,041,928)(84,981,222 - 84,981,991)
sequence
gaattccaggcaccaacatggtagtttgcagagacctataactgaagttc
caagaaaatctgacatccatggacaccaagcacacatgtagtacactaat
atacatgcagttattatattcatatacataaatgaaaaacaatgtctttt
ttagaagaaaagaaaccagatgttctgcaagacaaggaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaagg
atggaggaaaggagaaacaaagacatagaaatagagggaacagaagagta
atttgtacagaaaagttaatgggatttttcaaatggataaatgacatcag
ctcctaaacttaggaaagtctaaatgggatgaattaaaacaaaacctttt
gtgagtttgatttttatcatgaaagcatcctgagtttgccaaaagctttt
tctgcgtccgttgggggtgatatgtcctgtattctattcatgagatgtag
tccagttatccatttgcaaatgttgaaatttttgctttgcttcacctaag
tgggggtgtaaagcctgattttgtatgtcaacttaacacaagctagagtt
atcacagagaaaggaacctcccttgaggtaatacctccatgagatccagc
tgtaaggcattttctcaattagtgatcaagggggaagggcccattgtggg
tggtgccatcccttgggctggtagtactgggttctataagaaagcaagct

gaattcttcacccattagaccctcgatgcacctacggagtggtcagatga
taggttggtggggaccatcaccatcacagtgccaggtgttctctttaaag
ggcatagatgagggagccacgtgctttctcagactggtatctttggtttg
gtttttctgatatgattttaatttgcttataggaatctacatacagtccc
agttcactctaacaagtttatagagaggaccttctctatacccaggagta
agtaatttatcatctgtgttgtgtagtcagggttaagcagatggtgctgt
tcatacttccagccaggcacagagtcatcttacatctgcaaacagaatct
aaagcttcttgtaaaaagaagtctctcagcccggcagtgaggtgaacacc
tttaatcccagcaccggtgggtctctgagttcgaggccagcctggtctac
agagcaagttccaggacaactaaggccacataaagaaaccctgtcttaaa
aaatccaaacaaaccaaaacccaaaacctaactctcaccctccagaaggc
aagacacaatctgaaaacaacaacaaccatgacaacagaaacccctaaca
acattatgaacaaaccagtaccccggagcacttgactctatctgcatatg
tatcaaaagatggcctagtcggccatcaatggaaagagcggcccattgga
cttgcaaactttatatgcaggggaatgccagggccaaaaattgggagtgg
gtgggtaggggagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85041164_85041928
seq2: B6Ng01-076A20.b_45_794 (reverse)

seq1  AGCTTGCTTTCTTATAGAACCCAGTACTACCAGCCC-AGGGATGGCACCA  49
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGCTTGCTTTCTTATAGAACCCAGTACTACCAGCCCAAGGGATGGCACCA  50

seq1  CAAACAATGGGCCCTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACA  99
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATGGGCCCTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACA  100

seq1  GCTGGATCTCATGGAGGTATTACCTCAAGGGAGGTTCCTTTCTCTGTGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATCTCATGGAGGTATTACCTCAAGGGAGGTTCCTTTCTCTGTGAT  150

seq1  AACTCTAGCTTGTGTTAAGTTGACACACAAAATCAGGCTTTACACCCCCA  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACTCTAGCTTGTGTTAAGTTGACATACAAAATCAGGCTTTACACCCCCA  200

seq1  CTTAGGTGAAGCAAAGCAAAAATTTCAATATTTGCAAATGGATAACTGGA  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTTAGGTGAAGCAAAGCAAAAATTTCAACATTTGCAAATGGATAACTGGA  250

seq1  CTACATCTCATGAATAGAATACAGGACATATCACCCCCAACGGACGCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTCATGAATAGAATACAGGACATATCACCCCCAACGGACGCAGA  300

seq1  AAAAGCTTTTGGCAAACTCAGGATGCTTTCATGATAAAAATCAACCTCAC  349
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAAGCTTTTGGCAAACTCAGGATGCTTTCATGATAAAAATCAAACTCAC  350

seq1  AAAAGGTTTTGTTTTAATTCATCCCATTTAGACTTTCCTAAGTTTAGGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTGTTTTAATTCATCCCATTTAGACTTTCCTAAGTTTAGGAG  400

seq1  CTGATGTCATTTATCCATTTGAAAAATCCCATTAACTTTTCTTTACAAAT  449
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGATGTCATTTATCCATTTGAAAAATCCCATTAACTTTTCTGTACAAAT  450

seq1  TACTCTTCTGTTCCCTCTATTTCTATGTCTTTGTTTCTCCTTTCCTCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCTGTTCCCTCTATTTCTATGTCTTTGTTTCTCCTTTCCTCCAT  500

seq1  CCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCG  549
      ||||||||||||||||||||||||||||||||||                
seq2  CCTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT----------------  534

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTGTCTTGCAGAACATCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTGTCTTGCAGAACATCTG  584

seq1  GTTTCTTTTCTTCTAAAAAAGACATTGTTTTTCATTTATGTATATGAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTCTTCTAAAAAAGACATTGTTTTTCATTTATGTATATGAATA  634

seq1  TAATAACTGCATGTATATTAGTGTACTACATGTGTGCTTGGTGTCCATGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTGCATGTATATTAGTGTACTACATGTGTGCTTGGTGTCCATGG  684

seq1  ATGTCAGATTTTCTTGGAACTTCAGTTATAGGTCTCTGCAAACTACCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGATTTTCTTGGAACTTCAGTTATAGGTCTCTGCAAACTACCATG  734

seq1  TTGGTGCCTGGAATTC  765
      ||||||||||||||||
seq2  TTGGTGCCTGGAATTC  750

seq1: chr1_84981222_84981991
seq2: B6Ng01-076A20.g_66_831

seq1  GAATTCTTCACCCATTAGACCCTCGATGCACCTACGGAGTGGTCAGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACCCATTAGACCCTCGATGCACCTACGGAGTGGTCAGATGA  50

seq1  TAGGTTGGTGGGGACCATCACCATCACAGTGCCAGGTGTTCTCTTTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGTGGGGACCATCACCATCACAGTGCCAGGTGTTCTCTTTAAAG  100

seq1  GGCATAGATGAGGGAGCCATGTGCTTTCTCAGACTGGTATCTTTGGTTTG  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCATAGATGAGGGAGCCACGTGCTTTCTCAGACTGGTATCTTTGGTTTG  150

seq1  GTTTTTCTGATATGATTTTAATTTGCTTATAGGAATCTACATACAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGATATGATTTTAATTTGCTTATAGGAATCTACATACAGTCCC  200

seq1  AGTTCACTCTAACAAGTTTATAGAGAGGACCTTCTCTATACCCAGAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTTCACTCTAACAAGTTTATAGAGAGGACCTTCTCTATACCCAGGAGTA  250

seq1  AGTAATTTATCATCTGTGTTGTGTAGTCAGGGTTAAGCAGATGGTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTATCATCTGTGTTGTGTAGTCAGGGTTAAGCAGATGGTGCTGT  300

seq1  TCATACTTCCAGCCAGGCACAGAGTCATCTTACATCTGCAAACAGAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACTTCCAGCCAGGCACAGAGTCATCTTACATCTGCAAACAGAATCT  350

seq1  AAAGCTTCTTGTAAAAAGAAGTCTCTCAGCCCGGCAGTGGAGGTGAACAC  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGCTTCTTGTAAAAAGAAGTCTCTCAGCCCGGCAGT-GAGGTGAACAC  399

seq1  CTTTAATCCCAGCACAGGTGGGTCTCTGAGTTCGAGGCCAGCCTGGTCTA  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTAATCCCAGCACCGGTGGGTCTCTGAGTTCGAGGCCAGCCTGGTCTA  449

seq1  CAGAGCAAGTTCCAGGACAACTAAGGCCACATAAAGAAACCCTGTCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAGTTCCAGGACAACTAAGGCCACATAAAGAAACCCTGTCTTAA  499

seq1  AAAATCCAAACAAACCAAAACCCAAAACCTACCTCTCACCCTCCAGAAGG  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAATCCAAACAAACCAAAACCCAAAACCTAACTCTCACCCTCCAGAAGG  549

seq1  CAAGACACAACCTGAAAACAACAACAACAACCATGACAACAGAAACCCCT  600
      |||||||||| |||||   |||||||||||||||||||||||||||||||
seq2  CAAGACACAATCTGAA---AACAACAACAACCATGACAACAGAAACCCCT  596

seq1  AACAACATTATGAACAAACCAGTACCCGGGAGCACTTGACTCTATCTGCA  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACAACATTATGAACAAACCAGTACCCCGGAGCACTTGACTCTATCTGCA  646

seq1  TATGTATCAAAAGGTGGCCTAGTCGGCCATCAATGGAAAGAGCGGCCCAT  700
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATGTATCAAAAGATGGCCTAGTCGGCCATCAATGGAAAGAGCGGCCCAT  696

seq1  TGGACTTGCAAACTTTATATGCAGGGGAATGCCAGGGCCAAAAATTGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGCAAACTTTATATGCAGGGGAATGCCAGGGCCAAAAATTGGGA  746

seq1  GTGGGTGGGTAGGGGAGTGT  770
      ||||||||||||||||||||
seq2  GTGGGTGGGTAGGGGAGTGT  766