BAC Information

Click to search

BAC

Clone NameB6Ng01-076B01
Chromosome1 (Build37)
Map Location 39,955,572 - 40,081,623
singlet/doubletdoublet
Overlap geneMap4k4
Upstream geneEG625775, Nms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneIl1r2, Il1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076B01.bB6Ng01-076B01.g
ACCDH892440DH892441
length8161,043
definitionDH892440|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B01, 5' end.DH892441|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,955,572 - 39,956,051)(40,080,585 - 40,081,623)
sequence
gaattccttcaggtgtcatgtctttggagaatctaccatcccgtgaccta
ttcacagtcctcactgctcctgcctgagccctggcttcttgtctttctta
tctcttgcctttatctggtatactggagaggaaataggctgagaggttag
gcagccggagcaaggttgcacaactgataaataatagagccagggttcaa
acccagttcagctttgctctaaatccaggagactttcaaagaacacctgc
ttaatgttctttctgtctggctggaattacaatataatattatgcgtatt
tacaaactgccctttggacattagctttaagttctctgaggacaaattgt
gatgctctttccgatatcctgggcgctggcttgccctttcaataatagat
actgccttgaaaatggaaaacaatggcttcagtacggatcctgctcactg
catcttaggataggggtgggggggggcgggtctttgtgaaaaacaacctt
aattgtatccattagtatattcagaggttaacatcaattagcatgagctt
tcaattaaggagtactaaacaaacaaggtgagctatgatgactaagagtc
aataaaaccagcaaataacagagctagttccaccaaggaaatcagctgtt
ggagttgtcaaatacaaaatataaaatgtttaagaaacaaaaaggagaaa
aggaacaaaaagagaaccacgatgtgtgtttgaaatatttgaagtatgat
tggaagaagtatcaaatagttatagcactgtggtttgcttaactagagag
gaagcagagtgggtgc
gaattccaaggtctcgctcagggtcttgccgactccagaggtcagtgatc
ccagctcacactgcctctaccagctcagaagagaagtcctgcctaaggtc
atgaaatagacctggctgctgccaccagagcggacggaggcaaagaacac
ctgcaacacaatgagaggacacagtcagcagccattcactatctcctggt
gcccaaacccagataggcccaaacaaagtgtctccttggtttattttaga
atgcatcatcactgccagtggaccacaagccactgtacacagcagccaca
agtgcccagacgccgtaagggagccttaccttgtcattgcgttcacacag
gaactttagtctctgagcccttttgtgcataaatacaccatccaagtgac
cagtttccacagatcgtatctctattgccttctctccccagcccattgtc
tgattcgaccggatatatgctttgagagagagagagagagagagagagag
agagagagagagagagagaaagcattaacgaggaggagtcttgacaagcc
acttcagattcccatgcacggatgctgagtcctagcccatgacgacttgg
tttgccaggagttctgcctcagtgctaggcatatctctgaaagcctactt
aacatgcaagaggccctgggttcacttgactcaagtgaccaaaaaaaggg
ccgtgtgctgtctgcctgttctgtcactgtgtagtcatgagtcagtacca
gaacaagtcactttccctggggtcttttatgcccactttctacagacagc
catgaaagaagggaggaccaatggcgagcacacacctgggggacataact
acagcatgcaatgtcagggcatcagcttcttctcctgaccacaaagcaaa
agctactcagggcttgttggggcctggaacccagcccctcagaacaagca
gcattttccttctctgatttttcttcctgccacaacagttgggtcagaaa
caaaacacccacacaacctcacaaactaaataacaaacacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39955572_39956051
seq2: B6Ng01-076B01.b_42_521

seq1  GAATTCCTTCAGGTGTCATGTCTTTGGAGAATCTACCATCCCGTGACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGGTGTCATGTCTTTGGAGAATCTACCATCCCGTGACCTA  50

seq1  GTCACAGTCCTCACTGCTCCTGCCTGAGCCCTGGCTTCTTGTCTTTCTTA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTCCTCACTGCTCCTGCCTGAGCCCTGGCTTCTTGTCTTTCTTA  100

seq1  TCTCTTGCCTTTATCTGGTATACTGGAGAGGAAATAGGCTGAGAGGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCCTTTATCTGGTATACTGGAGAGGAAATAGGCTGAGAGGTTAG  150

seq1  GCAGCCGGAGCAAGGTTGCACAACTGATAAATAATAGAGCCAGGGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCGGAGCAAGGTTGCACAACTGATAAATAATAGAGCCAGGGTTCAA  200

seq1  ACCCAGTTCAGCTTTGCTCTAAATCCAGGAGACTTTCAGAGAACACCTGC  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCCAGTTCAGCTTTGCTCTAAATCCAGGAGACTTTCAAAGAACACCTGC  250

seq1  TTAGTGTTCTTTCTGTCTGGCTGGAATTACAATATAATATTATGCGTATT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTCTTTCTGTCTGGCTGGAATTACAATATAATATTATGCGTATT  300

seq1  TACAAACTGCCCTTTGGACATTAGCTTTAAGTTCTCTGAGGACAAATTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTGCCCTTTGGACATTAGCTTTAAGTTCTCTGAGGACAAATTGT  350

seq1  GATGCTCTTTCAGATATCCTGGGCGCTGGCTTGCCCTTTCAATAATAGAT  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCTTTCCGATATCCTGGGCGCTGGCTTGCCCTTTCAATAATAGAT  400

seq1  ACTGCCTTGAAAATGGAAAACAATGGCTTCAGTACGGATCCTGCTCACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTGAAAATGGAAAACAATGGCTTCAGTACGGATCCTGCTCACTG  450

seq1  CATCTTAGGATAGGGGTTGGGGGGGGCGGG  480
      ||||||||||||||||| ||||||||||||
seq2  CATCTTAGGATAGGGGTGGGGGGGGGCGGG  480

seq1: chr1_40080585_40081623
seq2: B6Ng01-076B01.g_68_1110 (reverse)

seq1  GGGGTGTTTGTTTGTTTGTTTGTGTGTTTGTGTGTGTGTTTTGTTTTTGA  50
      ||||||||||||  || ||||||| | ||||||| ||||||||||| |||
seq2  GGGGTGTTTGTTATTTAGTTTGTGAGGTTGTGTGGGTGTTTTGTTTCTGA  50

seq1  -CCAATTTGTGTGGCATGAAG-AGAATCAGAGAAGG-AAATGCTGCTTGC  97
       |||| |  ||||||| |||| | |||||||||||| |||||||||||| 
seq2  CCCAACTGTTGTGGCAGGAAGAAAAATCAGAGAAGGAAAATGCTGCTTGT  100

seq1  TCTTGAGTGGCTGGGTTCCAGGCCCC-ACAGGCCCCTGAGTAGCCTTCTG  146
      || |||| |||||||||||||||||| ||| | |||||||||| ||| ||
seq2  TC-TGAGGGGCTGGGTTCCAGGCCCCAACAAG-CCCTGAGTAG-CTTTTG  147

seq1  CTTTGTGGTCAGGAGCTGAGGCTGATG-CCTGACATTGCATGGCTGTGCT  195
      |||||||||||||||  || ||||||| ||||||||||||| |||||  |
seq2  CTTTGTGGTCAGGAGAAGAAGCTGATGCCCTGACATTGCAT-GCTGTAGT  196

seq1  TATGTCCCCAGTGTGTCTGCTCGCCATTCGTCCTCCCTTCTCTCATGGCT  245
      |||||||||   |||| ||||||||||| |||||||||||| ||||||||
seq2  TATGTCCCCCAGGTGTGTGCTCGCCATTGGTCCTCCCTTCTTTCATGGCT  246

seq1  GTTTGTAG-AAGT-GGCATGAAAGACCCCAGGGAAGTTGACTTGTTCTGG  293
      || ||||| |||| ||||| |||||||||||||||  |||||||||||||
seq2  GTCTGTAGAAAGTGGGCATAAAAGACCCCAGGGAAAGTGACTTGTTCTGG  296

seq1  TACTGACTCATGACTACACAGTGACAGAACAGGCAGACAGCACACGGCCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTCATGACTACACAGTGACAGAACAGGCAGACAGCACACGGCCC  346

seq1  -TCTTTTGGTCACTTGAGTAAAGTGAACCCAGGGCCTCTTGCATGTTAAG  392
       | |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTCACTTGAGTCAAGTGAACCCAGGGCCTCTTGCATGTTAAG  396

seq1  TAGGCTTTCAGAGATATGCCTAGCACTGAGGCAGAACTCCTGGCAAACCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTCAGAGATATGCCTAGCACTGAGGCAGAACTCCTGGCAAACCA  446

seq1  AGTCGTCATGGGCTAGGACTCAGCATCCGTGCATGGGAATCTGAAGTGGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCATGGGCTAGGACTCAGCATCCGTGCATGGGAATCTGAAGTGGC  496

seq1  TTGTCAAGACTCCTCCTCGTTAATGCTTTCTCTCTCTCTCTCTCTCTCTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGACTCCTCCTCGTTAATGCTTTCTCTCTCTCTCTCTCTCTCTC  546

seq1  TCTCTCTCTCTCTCTCTCTCTCTCAAAGCATATATCCGGTCGAATCAGAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCAAAGCATATATCCGGTCGAATCAGAC  596

seq1  AATGGGCTGGGGAGAGAAGGCAATAGAGATACGATCTGTGGAAACTGGTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTGGGGAGAGAAGGCAATAGAGATACGATCTGTGGAAACTGGTC  646

seq1  ACTTGGATGGTGTATTTATGCACAAAAGGGCTCAGAGACTAAAGTTCCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGATGGTGTATTTATGCACAAAAGGGCTCAGAGACTAAAGTTCCTG  696

seq1  TGTGAACGCAATGACAAGGTAAGGCTCCCTTACGGCGTCTGGGCACTTGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACGCAATGACAAGGTAAGGCTCCCTTACGGCGTCTGGGCACTTGT  746

seq1  GGCTGCTGTGTACAGTGGCTTGTGGTCCACTGGCAGTGATGATGCATTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGTGTACAGTGGCTTGTGGTCCACTGGCAGTGATGATGCATTCT  796

seq1  AAAATAAACCAAGGAGACACTTTGTTTGGGCCTATCTGGGTTTGGGCACC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACCAAGGAGACACTTTGTTTGGGCCTATCTGGGTTTGGGCACC  846

seq1  AGGAGATAGTGAATGGCTGCTGACTGTGTCCTCTCATTGTGTTGCAGGTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATAGTGAATGGCTGCTGACTGTGTCCTCTCATTGTGTTGCAGGTG  896

seq1  TTCTTTGCCTCCGTCCGCTCTGGTGGCAGCAGCCAGGTCTATTTCATGAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGCCTCCGTCCGCTCTGGTGGCAGCAGCCAGGTCTATTTCATGAC  946

seq1  CTTAGGCAGGACTTCTCTTCTGAGCTGGTAGAGGCAGTGTGAGCTGGGAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCAGGACTTCTCTTCTGAGCTGGTAGAGGCAGTGTGAGCTGGGAT  996

seq1  CACTGACCTCTGGAGTCGGCAAGACCCTGAGCGAGACCTTGGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACCTCTGGAGTCGGCAAGACCCTGAGCGAGACCTTGGAATTC  1043