BAC Information

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BAC

Clone NameB6Ng01-076B05
Chromosome1 (Build37)
Map Location 3,904,458 - 4,025,251
singlet/doubletdoublet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792
Downstream geneLOC619785, Rp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076B05.bB6Ng01-076B05.g
ACCDH892448DH892449
length1,1301,175
definitionDH892448|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B05, 5' end.DH892449|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,904,458 - 3,905,583)(4,024,058 - 4,025,251)
sequence
gaattcagtaccccagaatttctcatcacagaaggaacaaaaaaaaaaaa
aaaaaaaaaaccaacaaccaaaaaaataatcatcttttcccctaatctta
agtttatacacaataccctttcacttagtaattcaaggtggcttcattag
tccaacatgtccagacaaaagatatgagcagagaacccttttctatgtat
ggccatacacagaagtctgttttagaataggtctatcatattgtttattc
agatggaggtggaagtggtctatttcagaccaagatgatttatttttacg
atagagaaatgaagactgtaagtcagaagttccttaaaaaggaagtgttt
agaaaggactctgccactatatttaatgactagccacatcaacaatgcct
gatcttagctagtacctgcaagacagaagtcatgaagataaaaaggagat
gtatagacagcttgacattaggaaaagagaaagttcaaattttaaaaact
agaaaaattaaaaagaagaaatacatatatgtgtgcatatacacatatgg
acatccactcacatgcaaagaaagatgttttctcaagtaacaaatatatt
tcttaagccaatcagggtggcacatgcctataattccagcacttgaaatg
gtgagggaatgggactttggggcatttgagatttgcctgggttacagagt
gagaccatttctcacaaatcaatcaatgatgaaccagtcagttcattaat
tcttctcacccagtctgctgagaaagtgatgcgggtggcaaaagatgata
agtccttttcagaagactgtttcccttttctgtgtgatataagatgacca
cagaatgactagtcctttgaatttcaaggaaaaaaaaaaaacaacagcaa
catggcttttactaattgggctttcctccttaggtggcctttacaacaga
taaggactcagaaaggcaaattgtcctaggagcttgagtttccaaaggac
aagcttccacacttgtgaaaagaagaataggaagtgattctagcctggtg
gtcatgcacagatgaatgatgcttcatgctttacatatgtattaagcgcc
aagaacaagaaaacagcttgaatgaaccct

gaattccactttcccatctgttattcatttttctctatagctgtcatttt
cttttcatcaacaagagaaataatcaagcaataaatacatgtagatctac
tagacccccaaattcctttgggcacactgctgtgctacattttaggtaag
acagcaagtgaactacgtgcacatgttttaacactctgagtcacattcac
cacctgttctcactctgatttctttacacagtttgtgtcaacgggatcac
tgcaaagtaagtactaaaaaagcttaattcttggagacaggagataaagc
ccataaacagtccattagtaaaataaaaataaatattgggcccagagttt
catgccccagagtttgtcttcagatagtgcagtgctattgatggcctggg
catgggtactggacccaccaggatcctgctcctgacctctctgctgttct
ggcagcttgcaggcagtggaacaatgcaggtgcttatatgtagagaggac
tggttccatgcaggaagaaggccattcccaacagccttcaagtcaaattc
attcagaatcatatacaaatatttgggcctcatcactacaaatgagggga
gttctcgaaagacaagtattgttcttttgctcctttctcattaggaaagt
ataaaaacaaaaaacttgcactcactaaaatactgcatttgctgagacaa
ggattgggaatataaatgatagtttttgactttctggctttctgtttggg
gttttctatttataggtcaagtcatccaagtatggcaggacctgaaacat
atccagagcttgtttcccaggaggatgttagggtgctgagatgccatggc
ctagcacagtttgaaatatagaggctgcctggcccagaaaaaattaagag
cactatctataaatctggcagcaaatattttaagtggactaaatccacat
acgagctgctgaaagttctgggatctatagttctattgatcagtaatggt
atttgtcctagcataatactcttcacagtggttgctcgaccacagtatcg
attttacagtagaaaaaaattgcagtagtaatttagtagtaggtaaaatg
ctaatagcagcatgaaaataactttatggttggtgggttacaaaaatgag
acctgcattaaggttgcaatgttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3904458_3905583
seq2: B6Ng01-076B05.b_46_1175

seq1  GAATTCAGTACCCCAGAATTTCTCATCACAGAAGGAACAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACCCCAGAATTTCTCATCACAGAAGGAACAAAAAAAAAAAA  50

seq1  AAAAAAAAAACCAACAACCAAAAAAATAATCATCTTTTCCCCTAATCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCAACAACCAAAAAAATAATCATCTTTTCCCCTAATCTTA  100

seq1  AGTTTATACACAATACCCTTTCACTTAGTAATTCAAGGTGGCTTCATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATACACAATACCCTTTCACTTAGTAATTCAAGGTGGCTTCATTAG  150

seq1  TCCAACATGTCCAGACAAAAGATATGAGCAGAGAACCCTTTTCTATGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATGTCCAGACAAAAGATATGAGCAGAGAACCCTTTTCTATGTAT  200

seq1  GGCCATACACAGAAGTCTGTTTTAGAATAGGTCTATCATATTGTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATACACAGAAGTCTGTTTTAGAATAGGTCTATCATATTGTTTATTC  250

seq1  AGATGGAGGTGGAAGTGGTCTATTTCAGACCAAGATGATTTATTTTTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGGTGGAAGTGGTCTATTTCAGACCAAGATGATTTATTTTTACG  300

seq1  ATAGAGAAATGAAGACTGTAAGTCAGAAGTTCCTTAAAAAGGAAGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAATGAAGACTGTAAGTCAGAAGTTCCTTAAAAAGGAAGTGTTT  350

seq1  AGAAAGGACTCTGCCACTATATTTAATGACTAGCCACATCAACAATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGACTCTGCCACTATATTTAATGACTAGCCACATCAACAATGCCT  400

seq1  GATCTTAGCTAGTACCTGCAAGACAGAAGTCATGAAGATAAAAAGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGCTAGTACCTGCAAGACAGAAGTCATGAAGATAAAAAGGAGAT  450

seq1  GTATAGACAGCTTGACATTAGGAAAAGAGAAAGTTCAAATTTTAAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGACAGCTTGACATTAGGAAAAGAGAAAGTTCAAATTTTAAAAACT  500

seq1  AGAAAAATTAAAAAGAAGAAATACATATATGTGTGCATATACACATATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATTAAAAAGAAGAAATACATATATGTGTGCATATACACATATGG  550

seq1  ACATCCACTCACATGCAAAGAAAGATGTTTTCTCAAGTAACAAATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACTCACATGCAAAGAAAGATGTTTTCTCAAGTAACAAATATATT  600

seq1  TCTTAAGCCAATCAGGGTGGCACATGCCTATAATTCCAGCACTTGAAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCCAATCAGGGTGGCACATGCCTATAATTCCAGCACTTGAAATG  650

seq1  GTGAGGGAATGGGACTTTGGGGCATTTGAGATTTGCCTGGGTTACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAATGGGACTTTGGGGCATTTGAGATTTGCCTGGGTTACAGAGT  700

seq1  GAGACCATTTCTCACAAATCAATCAATGATGAACCAGTCAGTTCATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCATTTCTCACAAATCAATCAATGATGAACCAGTCAGTTCATTAAT  750

seq1  TCTTCTCACCCAGTCTGCTGAGAAAGTGATGCGGGTGGCAAAAGATGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCACCCAGTCTGCTGAGAAAGTGATGCGGGTGGCAAAAGATGATA  800

seq1  AGTCCTTTTCAGAAGACTGTTTCCCTTTTCTGTGTGATATAAGATGACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTTCAGAAGACTGTTTCCCTTTTCTGTGTGATATAAGATGACCA  850

seq1  CAGAATGACTAGTCCTTTGAATTTCAAGGAAAAAAAAAAAACAACAGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGACTAGTCCTTTGAATTTCAAGGAAAAAAAAAAAACAACAGCAA  900

seq1  CATGGCTTTTACTAATTGGCCTATCCTCCTTAGGTGGCCTTTACAACAGA  950
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  CATGGCTTTTACTAATTGGGCTTTCCTCCTTAGGTGGCCTTTACAACAGA  950

seq1  TAAGGACTCAGAAAGGCACATTGTCCTAGGAGCTTGAGTTTCCAAAGGAC  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAGGACTCAGAAAGGCAAATTGTCCTAGGAGCTTGAGTTTCCAAAGGAC  1000

seq1  AAGCTTCCACACTTGTGGAAAAGAAGAATAGGAAGTGGATTCTAGCCT-G  1049
      |||||||||||||||| ||||||||||||||||||| ||||||||||| |
seq2  AAGCTTCCACACTTGT-GAAAAGAAGAATAGGAAGT-GATTCTAGCCTGG  1048

seq1  TGGTCATGCACAGATGATTGATGC-TCATGCTGTACATATGTA-TAAGCG  1097
      ||||||||||||||||| |||||| ||||||| |||||||||| ||||||
seq2  TGGTCATGCACAGATGAATGATGCTTCATGCTTTACATATGTATTAAGCG  1098

seq1  -CAGGAGCAGGAAAACAGCT--GATGAACCCT  1126
       || || || ||||||||||   |||||||||
seq2  CCAAGAACAAGAAAACAGCTTGAATGAACCCT  1130


seq1: chr1_4024058_4025251
seq2: B6Ng01-076B05.g_68_1242 (reverse)

seq1  CTAACATTGCAACCCTTTAATACAGTTTCTCATTTTTGGTAACCCA-CAA  49
      ||||||||||||||  ||||| |||  |||||||||| |||||||| |||
seq2  CTAACATTGCAACC--TTAATGCAG-GTCTCATTTTT-GTAACCCACCAA  46

seq1  CCATAAAGTTATTTTCATTGCTACTATGTAGCATTTTTACTACTACTAAA  99
      ||||||||||||||||| |||| |||| |||||||||  |||||||| ||
seq2  CCATAAAGTTATTTTCA-TGCTGCTAT-TAGCATTTTACCTACTACT-AA  93

seq1  ATTACTACTGCAATTTTTTTCTACTGTAAATATCTGTATTTTCTTGTGGT  149
      |||||||||||||||||||||||||||||| |||  ||      ||||||
seq2  ATTACTACTGCAATTTTTTTCTACTGTAAA-ATCGATA-----CTGTGGT  137

seq1  CTGAGGCAACCACTGTGAAGAGTATTATGCTAGGAACAAATACCATTACT  199
      | || ||||||||||||||||||||||||||||| |||||||||||||||
seq2  C-GA-GCAACCACTGTGAAGAGTATTATGCTAGG-ACAAATACCATTACT  184

seq1  GATCAATAGAACTTATAGAATCCCAGAACTTTCAGCAGCTCGTATGTGGA  249
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  GATCAATAGAAC-TATAG-ATCCCAGAACTTTCAGCAGCTCGTATGTGGA  232

seq1  TTTAGTCCACTTAAAATATTTTGCTGCCAGATTTATAGATAGTGCTCTTA  299
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TTTAGTCCACTTAAAATA-TTTGCTGCCAGATTTATAGATAGTGCTCTT-  280

seq1  AATTTTTTCTGGGCCAGGCAGCCTCTATATTTCAAACTGTGCTAGGCCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTCTGGGCCAGGCAGCCTCTATATTTCAAACTGTGCTAGGCCAT  330

seq1  GGCATCTCAGCACCCTAACATCCTCCTGGGAAACAAGCTCTGGATATGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCAGCACCCTAACATCCTCCTGGGAAACAAGCTCTGGATATGTT  380

seq1  TCAGGTCCTGCCATACTTGGATGACTTGACCTATAAATAGAAAACCCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCTGCCATACTTGGATGACTTGACCTATAAATAGAAAACCCCAA  430

seq1  ACAGAAAGCCAGAAAGTCAAAAACTATCATTTATATTCCCAATCCTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGCCAGAAAGTCAAAAACTATCATTTATATTCCCAATCCTTGTC  480

seq1  TCAGCAAATGCAGTATTTTAGTGAGTGCAAGTTTTTTGTTTTTATACTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAATGCAGTATTTTAGTGAGTGCAAGTTTTTTGTTTTTATACTTT  530

seq1  CCTAATGAGAAAGGAGCAAAAGAACAATACTTGTCTTTCGAGAACTCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGAGAAAGGAGCAAAAGAACAATACTTGTCTTTCGAGAACTCCCC  580

seq1  TCATTTGTAGTGATGAGGCCCAAATATTTGTATATGATTCTGAATGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTAGTGATGAGGCCCAAATATTTGTATATGATTCTGAATGAATT  630

seq1  TGACTTGAAGGCTGTTGGGAATGGCCTTCTTCCTGCATGGAACCAGTCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAAGGCTGTTGGGAATGGCCTTCTTCCTGCATGGAACCAGTCCT  680

seq1  CTCTACATATAAGCACCTGCATTGTTCCACTGCCTGCAAGCTGCCAGAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATATAAGCACCTGCATTGTTCCACTGCCTGCAAGCTGCCAGAAC  730

seq1  AGCAGAGAGGTCAGGAGCAGGATCCTGGTGGGTCCAGTACCCATGCCCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGGTCAGGAGCAGGATCCTGGTGGGTCCAGTACCCATGCCCAG  780

seq1  GCCATCAATAGCACTGCACTATCTGAAGACAAACTCTGGGGCATGAAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAATAGCACTGCACTATCTGAAGACAAACTCTGGGGCATGAAACT  830

seq1  CTGGGCCCAATATTTATTTTTATTTTACTAATGGACTGTTTATGGGCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCCAATATTTATTTTTATTTTACTAATGGACTGTTTATGGGCTTT  880

seq1  ATCTCCTGTCTCCAAGAATTAAGCTTTTTTAGTACTTACTTTGCAGTGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGTCTCCAAGAATTAAGCTTTTTTAGTACTTACTTTGCAGTGAT  930

seq1  CCCGTTGACACAAACTGTGTAAAGAAATCAGAGTGAGAACAGGTGGTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGACACAAACTGTGTAAAGAAATCAGAGTGAGAACAGGTGGTGAA  980

seq1  TGTGACTCAGAGTGTTAAAACATGTGCACGTAGTTCACTTGCTGTCTTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCAGAGTGTTAAAACATGTGCACGTAGTTCACTTGCTGTCTTAC  1030

seq1  CTAAAATGTAGCACAGCAGTGTGCCCAAAGGAATTTGGGGGTCTAGTAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGTAGCACAGCAGTGTGCCCAAAGGAATTTGGGGGTCTAGTAGA  1080

seq1  TCTACATGTATTTATTGCTTGATTATTTCTCTTGTTGATGAAAAGAAAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATGTATTTATTGCTTGATTATTTCTCTTGTTGATGAAAAGAAAAT  1130

seq1  GACAGCTATAGAGAAAAATGAATAACAGATGGGAAAGTGGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTATAGAGAAAAATGAATAACAGATGGGAAAGTGGAATTC  1175


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