BAC Information

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BAC

Clone NameB6Ng01-076D17
Chromosome1 (Build37)
Map Location 43,548,424 - 43,665,276
singlet/doubletdoublet
Overlap geneNck2
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644
Downstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D17.bB6Ng01-076D17.g
ACCDH892556DH892557
length1,1431,047
definitionDH892556|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D17, 5' end.DH892557|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,548,424 - 43,549,559)(43,664,238 - 43,665,276)
sequence
gaattccttgactggatcactgtgacagacccttttggacttctgcagct
tgtgtaatggctctctgcctatccttcggtcatcttgcatgactgattca
gagcagggactgaagatcacatactcagtagtatcacaggctggcagggt
taggccttggcactgtgaaagctctgtgagagcctctgactgtgaaccta
cttcgctccgtgcacctgagaggaaccacaaaggtagtctctgcttccct
gagaagtaggacaggttgtgctcctcgcctggtcgggcagtccgtaggac
acaagagtgaatccttacctgtcttcatctcagggcaaacaattagaaca
cctgtgctccagcctccactctctgcacacccagggagaagtatgcagag
gtggagtttgtggttgctgggctctgcctcctccttgaaggccaccaggc
aggtgtctttgcctccagcagatgcccagaagaaacacttgattggaaat
gttgacttctgagatgggtcagaagaaggtgtgggctagtcagctggtgc
ctcgaatggctgcccacttgttcctgtgaccacagaactgggttttaaaa
gccaccacttttcagtctcttttcatcaaccctaagattagatagaaacc
tctcaggccatgcttttggcattggaacttggtaagaattggatagtaag
agtttgtggtatttgagggtttttctagccacagctcaggaagctttggg
gctctggaaatataagtggatatatactggccaatgtgagttggaagagc
agttactctggagtggcctgggctccaccacttctgcaccttattttctt
atttgttaaatgaacaccttggagctgaagctctttaatccttcccttca
ggattcaaactctagttacatttcacctagagaagcctacgggaagcgat
gcccatttccagccacattggaaacgggtttgttcttccattacccaaaa
tgctgtcagcctatgcctatttttacttacttggaaagagggcccgtctg
gagtgaagtttctggttgttcttttgggcaaggcgggagcaaagggtaga
atagttgctaaaaacaaatcagagaatgccctggttctagcac
gaattctaagtgataaacagaacaagaactgcagtgtgtgcctttgagtt
gttaaacatgccaggcttaagtcatagataataaaataatgtttcaaata
tacctactcaggcagaaaactccactttaccttattctgagtttgattct
tagaacttttatttggcagcacagactgtagcaggagatggccaagaagc
agagatttcaatatatatttaaagatatgttaccaggaaggaagctgttc
ttctcagaggtctcctggataacctaaggttgagtttctaccctaaggca
ccaccaatccatgaggacatttcagtgatatcatggtgttctctattgca
cctggcaacaacttcagaaggtaaacctcactgtttacattggaccctgt
catttttaaccaaagaagctaaagggtcaatgtgacaccacagaagccaa
aacaatgggacacacaggccaatgtgatgtcacatagtccaatacaatgg
gagacacacacaggccaatgtgatgtcacagaagctagtgcagtggaata
cataggccaatctaatatcacagaagccagtgcaatggaaaatactgggt
cagtgtaatagtacagaggccattgcaacaggacacacagaccaagtcat
gtctcaaaggccagttttaatttttcaattttctttttctgttccagatg
actgggtcactcaactcttcaatcctgtctgatgtatcattttactagga
aaatggattctttttcatgtccacaacctggactgtgtcaggaaaaaggc
actgtccagacgcagtaacttgtcacaaagttcagatgttgttcttttct
gttttgtgagggccctaaatgagagttatgaactttatcttttccctctg
tctctcattccatctgaccccgtgggaggcaatacacagattgggttttg
gtgactatctggtgaaaatggaatcccaaggctcagaaataagttagaag
gtcaaccgatggaaactagaagcataagaacaaactgggcttcaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43548424_43549559
seq2: B6Ng01-076D17.b_47_1189

seq1  GAATTCCTTGACTGGATCACTGTGACAGACCCTTTTGGACTTCTGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACTGGATCACTGTGACAGACCCTTTTGGACTTCTGCAGCT  50

seq1  TGTGTAATGGCTCTCTGCCTATCCTTCGGTCATCTTGCATGACTGATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATGGCTCTCTGCCTATCCTTCGGTCATCTTGCATGACTGATTCA  100

seq1  GAGCAGGGACTGAAGATCACATACTCAGTAGTATCACAGGCTGGCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGACTGAAGATCACATACTCAGTAGTATCACAGGCTGGCAGGGT  150

seq1  TAGGCCTTGGCACTGTGAAAGCTCTGTGAGAGCCTCTGACTGTGAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTGGCACTGTGAAAGCTCTGTGAGAGCCTCTGACTGTGAACCTA  200

seq1  CTTCGCTCCGTGCACCTGAGAGGAACCACAAAGGTAGTCTCTGCTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTCCGTGCACCTGAGAGGAACCACAAAGGTAGTCTCTGCTTCCCT  250

seq1  GAGAAGTAGGACAGGTTGTGCTCCTCGCCTGGTCGGGCAGTCCGTAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGGACAGGTTGTGCTCCTCGCCTGGTCGGGCAGTCCGTAGGAC  300

seq1  ACAAGAGTGAATCCTTACCTGTCTTCATCTCAGGGCAAACAATTAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGAATCCTTACCTGTCTTCATCTCAGGGCAAACAATTAGAACA  350

seq1  CCTGTGCTCCAGCCTCCACTCTCTGCACACCCAGGGAGAAGTATGCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTCCAGCCTCCACTCTCTGCACACCCAGGGAGAAGTATGCAGAG  400

seq1  GTGGAGTTTGTGGTTGCTGGGCTCTGCCTCCTCCTTGAAGGCCACCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTTTGTGGTTGCTGGGCTCTGCCTCCTCCTTGAAGGCCACCAGGC  450

seq1  AGGTGTCTTTGCCTCCAGCAGATGCCCAGAAGAAACACTTGATTGGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTTTGCCTCCAGCAGATGCCCAGAAGAAACACTTGATTGGAAAT  500

seq1  GTTGACTTCTGAGATGGGTCAGAAGAAGGTGTGGGCTAGTCAGCTGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTTCTGAGATGGGTCAGAAGAAGGTGTGGGCTAGTCAGCTGGTGC  550

seq1  CTCGAATGGCTGCCCACTTGTTCCTGTGACCACAGAACTGGGTTTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAATGGCTGCCCACTTGTTCCTGTGACCACAGAACTGGGTTTTAAAA  600

seq1  GCCACCACTTTTCAGTCTCTTTTCATCAACCCTAAGATTAGATAGAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTTTTCAGTCTCTTTTCATCAACCCTAAGATTAGATAGAAACC  650

seq1  TCTCAGGCCATGCTTTTGGCATTGGAACTTGGTAAGAATTGGATAGTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGCCATGCTTTTGGCATTGGAACTTGGTAAGAATTGGATAGTAAG  700

seq1  AGTTTGTGGTATTTGAGGGTTTTTCTAGCCACAGCTCAGGAAGCTTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGTATTTGAGGGTTTTTCTAGCCACAGCTCAGGAAGCTTTGGG  750

seq1  GCTCTGGAAATATAAGTGGATATATACTGGCCAATGTGAGTTGGAAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAAATATAAGTGGATATATACTGGCCAATGTGAGTTGGAAGAGC  800

seq1  AGTTACTCTGGAGTGGCCTGGGCTCCACCACTTCTGCACCTTATTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTGGAGTGGCCTGGGCTCCACCACTTCTGCACCTTATTTTCTT  850

seq1  ATTTGTTAAATGAACACCTTGGAGCTGAAGCTCTTTAATCCTTCCCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAATGAACACCTTGGAGCTGAAGCTCTTTAATCCTTCCCTTCA  900

seq1  GGATTCAAACTCTAGTTACATTTCACCTAGAGAAGCCTAC-GGAAGCGAT  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATTCAAACTCTAGTTACATTTCACCTAGAGAAGCCTACGGGAAGCGAT  950

seq1  G-CCAATTCCAGCCACATT-GAAACGGG-TTGTTCTTCCATTACCCCAAA  996
      | ||| ||||||||||||| |||||||| ||||||||||||||||| |||
seq2  GCCCATTTCCAGCCACATTGGAAACGGGTTTGTTCTTCCATTACCCAAAA  1000

seq1  GGCTGTCAGCCTATGCTTATTTTTACTTACTT-GAAAGAAGGCCCGTCTG  1045
       ||||||||||||||| ||||||||||||||| |||||| ||||||||||
seq2  TGCTGTCAGCCTATGCCTATTTTTACTTACTTGGAAAGAGGGCCCGTCTG  1050

seq1  GAGTGAAGTTTCTGGTTGTTCTTTTGGGC-AGGCGGGAGCAAAGGGTAG-  1093
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  GAGTGAAGTTTCTGGTTGTTCTTTTGGGCAAGGCGGGAGCAAAGGGTAGA  1100

seq1  ATAGTGCTTAAAAACAATCCAGAGAATGCCCCTGTCCTAGCAC  1136
      |||||   |||||||||  ||||||||||||  || |||||||
seq2  ATAGTTGCTAAAAACAAATCAGAGAATGCCCTGGTTCTAGCAC  1143

seq1: chr1_43664238_43665276
seq2: B6Ng01-076D17.g_69_1115 (reverse)

seq1  GCTTGGAAGCCAGTTTGTTC-TCTGCTTCTAGTTTCCATCGGTTGACC-T  48
      ||||| |  ||||||||||| | ||||||||||||||||||||||||| |
seq2  GCTTGAAGCCCAGTTTGTTCTTATGCTTCTAGTTTCCATCGGTTGACCTT  50

seq1  CTAACCTA-TTCTGAGCCTTGGGAATTCCATTTTCACCAGATAGTCACC-  96
      ||||| || |||||||||||||| ||||||||||||||||||||||||| 
seq2  CTAACTTATTTCTGAGCCTTGGG-ATTCCATTTTCACCAGATAGTCACCA  99

seq1  AAAGCCAATCTGTGTAATGCCTCCCACGGGGTCAGATGG-ATGAGAGACA  145
      ||| |||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAACCCAATCTGTGTATTGCCTCCCACGGGGTCAGATGGAATGAGAGACA  149

seq1  GA-GGTAAAGATAAAGTTCATAACTCTCATTTAGGG-CCTCAC-AAACAG  192
      || || |||||||||||||||||||||||||||||| |||||| ||||||
seq2  GAGGGAAAAGATAAAGTTCATAACTCTCATTTAGGGCCCTCACAAAACAG  199

seq1  AAAAGAACAACATCTGAACTTTGTGACAAGTTACTGCGTCTGGACAGTGC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACAACATCTGAACTTTGTGACAAGTTACTGCGTCTGGACAGTGC  249

seq1  CTTTTTCCTGACACAGTCCAGGTTGTGGACATGAAAAAGAATCCATTTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTGACACAGTCCAGGTTGTGGACATGAAAAAGAATCCATTTTC  299

seq1  CTAGTAAAATGATACATCAGACAGGATTGAAGAGTTGAGTGACCCAGTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAAATGATACATCAGACAGGATTGAAGAGTTGAGTGACCCAGTCA  349

seq1  TCTGGAACAGAAAAAGAAAATTGAAAAATT-AAACTGGCCTTTGAGACAT  391
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGGAACAGAAAAAGAAAATTGAAAAATTAAAACTGGCCTTTGAGACAT  399

seq1  GACTTGGTCTGTGTGTCCTGTTGCAATGGCCTCTGTACTATTACACTGAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTCTGTGTGTCCTGTTGCAATGGCCTCTGTACTATTACACTGAC  449

seq1  CCAGTATTTTCCATTGCACTGGCTTCTGTGATATTAGATTGGCCTATGTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTTTCCATTGCACTGGCTTCTGTGATATTAGATTGGCCTATGTA  499

seq1  TTCCACTGCACTAGCTTCTGTGACATCACATTGGCCTGTGTGTGTCTCCC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGCACTAGCTTCTGTGACATCACATTGGCCTGTGTGTGTCTCCC  549

seq1  ATTGTATTGGACTATGTGACATCACATTGGCCTGTGTGTCCCATTGTTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTGGACTATGTGACATCACATTGGCCTGTGTGTCCCATTGTTTT  599

seq1  GGCTTCTGTGGTGTCACATTGACCCTTTAGCTTCTTTGGTTAAAAATGAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGTGGTGTCACATTGACCCTTTAGCTTCTTTGGTTAAAAATGAC  649

seq1  AGGGTCCAATGTAAACAGTGAGGTTTACCTTCTGAAGTTGTTGCCAGGTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCAATGTAAACAGTGAGGTTTACCTTCTGAAGTTGTTGCCAGGTG  699

seq1  CAATAGAGAACACCATGATATCACTGAAATGTCCTCATGGATTGGTGGTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGAACACCATGATATCACTGAAATGTCCTCATGGATTGGTGGTG  749

seq1  CCTTAGGGTAGAAACTCAACCTTAGGTTATCCAGGAGACCTCTGAGAAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGTAGAAACTCAACCTTAGGTTATCCAGGAGACCTCTGAGAAGA  799

seq1  ACAGCTTCCTTCCTGGTAACATATCTTTAAATATATATTGAAATCTCTGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCCTTCCTGGTAACATATCTTTAAATATATATTGAAATCTCTGC  849

seq1  TTCTTGGCCATCTCCTGCTACAGTCTGTGCTGCCAAATAAAAGTTCTAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCCATCTCCTGCTACAGTCTGTGCTGCCAAATAAAAGTTCTAAG  899

seq1  AATCAAACTCAGAATAAGGTAAAGTGGAGTTTTCTGCCTGAGTAGGTATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTCAGAATAAGGTAAAGTGGAGTTTTCTGCCTGAGTAGGTATA  949

seq1  TTTGAAACATTATTTTATTATCTATGACTTAAGCCTGGCATGTTTAACAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACATTATTTTATTATCTATGACTTAAGCCTGGCATGTTTAACAA  999

seq1  CTCAAAGGCACACACTGCAGTTCTTGTTCTGTTTATCACTTAGAATTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGGCACACACTGCAGTTCTTGTTCTGTTTATCACTTAGAATTC  1047