BAC Information

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BAC

Clone NameB6Ng01-076I17
Chromosome6 (Build37)1 (Build37)
Map Location 123,995,001 - 123,995,56667,618,955 - 67,619,476
singlet/doubletsingletsinglet
Overlap geneV2r1b
Upstream geneClec4b1, Clec4a2, Clec4b2, Ppia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282
Downstream geneEG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076I17.bB6Ng01-076I17.g
ACCDH892784DH892785
length1,083660
definitionDH892784|Mus musculus domesticus DNA, BAC clone: B6Ng01-076I17, 5' end.DH892785|Mus musculus domesticus DNA, BAC clone: B6Ng01-076I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,995,001 - 123,995,566)(67,618,955 - 67,619,476)
sequence
gaattcctcctgtgagaattctttgtttagtcctgtatcccatttttaat
agggttatttggttctctcgagtctaactttttgagttctttgaatatat
tgaatattagccctctatcagatgtagcattggtaaagattttttcccaa
tctgttggttgctggtttttcctattgacagtgtcctttgccttatggaa
gctttgcaaatttaggatgtcccttttgtcaattcttgatcttagagtat
aagtcattggtgctcttttcagtaaaatttcccctgtgcccatgttttcc
cataagttctttcattgtagagaatagttttcgctatcctgggtttttgg
ttattccaaatgaatttgcaaattgttctttctaactctatgaagaattg
agttggaattttggtgatgattgcattgaatctgtagattgctttctgca
agattctcaattttactatattaatcctgccaatccatgagcaagtaata
tctttccattctctgaagtcttctatgatttctttcttcagagattacaa
gctcttctcatacagatactcctttttcagttgcttgtggtgagtcacac
caagatatttttatattatttgtgactattgtgaaggttgtcatttccct
aatttctttctcagcctatttatccttagagtagaggccagctactgatt
tgtttgaattagttgtatatccagccactatgctgaagttgttttgtcag
gtttaggtgttctctggtgtaattttggagttcacttaagtatactttca
tatcatctgcaaatagagatattttgactttttcctttccaatttgtatc
cttttgaccttctttattgtctaaagatccagaataggattcttctggtt
tccacatttgcctgggagttcaccctttgccataccttctccatatccaa
attctgctcagagagagcagctgttgcagaagtgctgtcacatgtgagat
cactggtgagaaccaccatactatctcttttaaaaatagcccttaaactg
tatttaggggggctggtgaagaatttttccagg
gaattcaagaggttagactgcagagaaacaaataaccctatgaaaaatag
gatatggagctaaacaaagaattctcaactgtggaatactaaatggataa
gaagcacctaaaaaaaaaaagttcaacatccgtcatcagggaagtgcaaa
tcaaaacaaccgtgagattcaacctcacaccagtcagaacagccaagatc
agaaactcaggtgaaagcagatgctggagaggatgtggagaaagaggaac
actcctccattgctggtgggattgcaagctgggacaaccaatctggaaat
cagtttggtgattcctcagaaaattggacatagtactacctgaggaccca
gctgtatcactcctggtcatataccaagaagatggtccagcatgtaataa
ggacacacactccactatgttcatagcagccttatttagaatagccagaa
gctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatg
tggtacatttacacaatggagtactgctcagctattaaaaagaatgaatt
tatgaaattcctaggcaaatggatggacctggagggcatcatcctgagtg
aggtaacccaatcacaaaagaactcaaatgatatgtactcactgataaag
tggatattag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_123995001_123995566
seq2: B6Ng01-076I17.b_562_1126

seq1  TCTTCTATGATTTCTTTCTTCAGAGATTACAAGCTCTTGTCATACAGATA  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTCTATGATTTCTTTCTTCAGAGATTACAAGCTCTTCTCATACAGATA  50

seq1  CTCCTTTTTCAATTGCTGGTGCTGAGTCACACCAGGAGATTTTTATATTA  100
      ||||||||||| ||||| ||| |||||||||||| || ||||||||||||
seq2  CTCCTTTTTCAGTTGCTTGTGGTGAGTCACACCAAGATATTTTTATATTA  100

seq1  TTTGTGACTATTGTGAAGGTTGTCATTTCCCTATTTTCTTTCTCAGCCTA  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGTGACTATTGTGAAGGTTGTCATTTCCCTAATTTCTTTCTCAGCCTA  150

seq1  TTTATCCTTAGAGTAGAGGCCAGCTACTGATTTGTTTGAATTAGTTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTTAGAGTAGAGGCCAGCTACTGATTTGTTTGAATTAGTTGTAT  200

seq1  ATCCAGCCACTATGCTGAAGTTG-TTTATCAGGTTTAGGTGTTCTCTGGT  249
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  ATCCAGCCACTATGCTGAAGTTGTTTTGTCAGGTTTAGGTGTTCTCTGGT  250

seq1  GTAATTTTGGGGTTCACTTAAGTATACTTTCATATCATCTGCAAATAGAG  299
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGGAGTTCACTTAAGTATACTTTCATATCATCTGCAAATAGAG  300

seq1  ATATTTTGACTTTTTCCTTTCCAACTTGTATCCTTTTGACCTTCTTTTAT  349
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  ATATTTTGACTTTTTCCTTTCCAATTTGTATCCTTTTGACCTTC-TTTAT  349

seq1  TGTCTAAGGATCCAGAAATAGGATTCTTCTGGTTTCCACATTTGCCTGGG  399
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTCTAAAGATCCAG-AATAGGATTCTTCTGGTTTCCACATTTGCCTGGG  398

seq1  AGTTCACCCTTTGCCATACC-TCTCCATATCCAAATTATGCCCAGAGAGA  448
      |||||||||||||||||||| |||||||||||||||| ||| ||||||||
seq2  AGTTCACCCTTTGCCATACCTTCTCCATATCCAAATTCTGCTCAGAGAGA  448

seq1  GCTGTTGTCACAGAAGTGCTGTCACATGTGAGATCACTGGTGAGACTACC  498
      || | |||  |||||||||||||||||||||||||||||||||||  |||
seq2  GCAGCTGTTGCAGAAGTGCTGTCACATGTGAGATCACTGGTGAGA--ACC  496

seq1  A--ATACTATCTCTTTTAAAAATAG-TCTTAGACTGTTATTTTGGGGGGC  545
      |  ||||||||||||||||||||||  |||| |||| ||||| |||||||
seq2  ACCATACTATCTCTTTTAAAAATAGCCCTTAAACTG-TATTTAGGGGGGC  545

seq1  TGGTGAAGAATTTATTCCAGG  566
      ||||||||||||| |||||||
seq2  TGGTGAAGAATTT-TTCCAGG  565

seq1: chr1_67618955_67619476
seq2: B6Ng01-076I17.g_206_727 (reverse)

seq1  CTAATATCCAC-TTATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGAA  49
      ||||||||||| ||||||||||||||||||  | ||||||| ||||||| 
seq2  CTAATATCCACTTTATCAGTGAGTACATATCATTTGAGTTCTTTTGTGAT  50

seq1  TGTATTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAG  99
      ||  ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAG  100

seq1  GAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTTCATTGTGT  149
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  GAATTTCATAAATTCATTCTTTTTAATAGCTGAGCAGTACTCCATTGTGT  150

seq1  AAATGTGCCACATTTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGG  199
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AAATGTACCACA-TTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGG  199

seq1  TTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGG  249
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTCTTTCCAGCTTCTGGCTATTCTAAATAAGGCTGCTATGAACATAGTGG  249

seq1  AGCATGTGTCCTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCAGG  299
      ||  ||||||||| ||||  | |||  |||||||| | |||||| |||||
seq2  AGTGTGTGTCCTTATTACATGCTGGACCATCTTCTTGGTATATGACCAGG  299

seq1  AGAGGTATTGCTGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGAA  349
      || | ||  ||||| ||||| |||||||||||||||||||||||||||||
seq2  AGTGATACAGCTGGGTCCTCAGGTAGTACTATGTCCAATTTTCTGAGGAA  349

seq1  CCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAAC  399
       | ||| ||||||||||||| ||||||| | ||| ||||||||||||| |
seq2  TCACCAAACTGATTTCCAGATTGGTTGTCCCAGCTTGCAATCCCACCAGC  399

seq1  AATGGAGGAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCA  449
      ||||||||||||||||||||||||||||||| | |||||||||||| |||
seq2  AATGGAGGAGTGTTCCTCTTTCTCCACATCCTCTCCAGCATCTGCTTTCA  449

seq1  CCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAG  499
      ||||| ||| ||||||| ||  |||||||||||||||||| |||||||| 
seq2  CCTGAGTTTCTGATCTTGGCTGTTCTGACTGGTGTGAGGTTGAATCTCAC  499

seq1  GGTTGTTTTGATTTGCATTTCCC  522
      ||||||||||||||||| |||||
seq2  GGTTGTTTTGATTTGCACTTCCC  522