BAC Information

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BAC

Clone NameB6Ng01-076J18
Chromosome1 (Build37)
Map Location 81,316,207 - 81,480,372
singlet/doubletdoublet
Overlap genenone
Upstream geneCul3, EG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076J18.bB6Ng01-076J18.g
ACCDH892827DH892828
length1,0871,102
definitionDH892827|Mus musculus domesticus DNA, BAC clone: B6Ng01-076J18, 5' end.DH892828|Mus musculus domesticus DNA, BAC clone: B6Ng01-076J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,479,271 - 81,480,372)(81,316,207 - 81,317,307)
sequence
gaattcctgtactcaactatatataactttgtatctagttgacaaaatct
acataaatcctggagcatcttatataaagcatacataaattaatcaaaat
aatgttgattataatattctatacatgtattatccctgcacatatatttg
tggtgcttctcatatcctattttgtttttgcctatgaacatcttgacaaa
aggcttgtaatttgttagtttattaacagcaaatgtcctaaaccaaggcc
aatctgtttctctaacccaatgtttatttttgtgcaagagaaagacaatg
atgtgtttcatagaaactcttgattgcagaatgtgaggctttccatgaaa
catgatatttctgtttgttagaaagaatccagtattacctagtaacaagt
taatcctggaaatgataatatttctttggcaacattccgattttttgtat
tttctttaggtctaaaattaagagcattattgaaaatcattggcatgctt
ccatgtattggtcacaaattgatgatactgtaaatcgaatggctgatgct
gcagttgtactcctaagccttcttatggaccttaatccacttcattaaag
aaaaatacaatcagatcttctttgttctttctttatgccaaatctttcct
atgggatagaatcaatcctaagctaatgtactttatgagatcatgtggaa
ctacattttagttcttccggacaccgtgttctttgtaaggtcacagtgac
atgagcaaaggcagcttgaatgactaaaaaagaaatctttgccgcctctg
tgcagatcctttaatgtgaaccactggatttgacattggaattcaaaaca
aaatatgtttctgattagaaacgattaaaatatttctttttgtttcagta
caaaaccaccacccaaccctccctttgctttgctttctcagaactcctgt
agacagccttgtgcatgtaggcatgcctttaaacaaataaatcacttgtg
tcatgattttctcagtattaaacaaagaaacatatactacgaaattttga
gccaattattggaccctctgtgttgctatttaattac
gaattcaaggtatttgatctcaggtcatcatggtaatatggcaaatgctt
taccccctgagccatctcccttggcttgtcttaactttttctttaatgct
cacagtattcaagaagtacctgaaaatcatgcaatctttacataattctc
cttaggaacgggagaggtggctcagcagctaagaacactggctgctcttc
cagaggatcagggcttgattctcaacatttcggaggcagctcacaaccat
ttgtaactcctgtcctaagcaatctgatgccatcttctggcctccacagg
cactgcattcacatagtacacagacacacatgcaagcaaaatacactcat
atacatgaagattttttaaaaaatcaacgcatcaaaaatattttcaaaga
atacataaatattctaaatataaacaaatgaatgcatttatactttcaga
gctgttttaaagtctattttaatattgattttattgtaattcttctctct
tcatttataagccttagcacatgtgctccccctatcccgacaaacatacc
atgtacagacaaataaggaatttaaagcatttcctgaatgatataactac
tatgagacacattacttgttagtatcaactattttaagccatgattttaa
aagatattgcattattaatacttccatgtgttgttcatagaaagatggca
cctttcaataatcaatcagctttggcctaaccccttttaaattttttcac
tcatctctgaaaatgtagtttattcatctataatcagtagatattttaaa
ctaggctaaagtgggtgaacagtaagaattattcaaaggtcaattcaaat
taatgagatagtttagaaaatatagttatctgaatattttagactaagta
cagtgataatctgtaaatcatctgaagacatctggtttttaccacagtgt
gagacttactttcacctcttggaatttctagtgtagttttctcacagaca
gttgacctaattgtggaagcaatttgctggctacatctttaatttcatga
tgtcaaatgatacttgaaaatttggtcccataaatgtggaaaagaggtct
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81479271_81480372
seq2: B6Ng01-076J18.b_46_1132 (reverse)

seq1  GTAATTAAATAGCAACAACAGAGTGTTCCAATAATTTTGGCTTCAAAATT  50
      |||||||||||||||| |||||| | ||||||||  ||||| ||||||||
seq2  GTAATTAAATAGCAAC-ACAGAG-GGTCCAATAA--TTGGC-TCAAAATT  45

seq1  TCTGTAGTATGTTTGTTTCTTTGTTTAATTACTGAGAAAATCATGACACA  100
      || ||||||  | ||||||||||||||| |||||||||||||||||||||
seq2  TC-GTAGTA--TATGTTTCTTTGTTTAA-TACTGAGAAAATCATGACACA  91

seq1  AGTGATTTATTTGTTTAAAGGCATGCCTTACATGCACAAAGGCTTGTCTT  150
      ||||||||||||||||||||||||||| ||||||||| ||||| |||| |
seq2  AGTGATTTATTTGTTTAAAGGCATGCC-TACATGCAC-AAGGC-TGTC-T  137

seq1  ACAGGAGTTCTGAGAAAGCAAAGCAAAGGGAGGGTTTGGGTGGTGGTTTT  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAGGAGTTCTGAGAAAGCAAAGCAAAGGGAGGG-TTGGGTGGTGGTTTT  186

seq1  GTACCTGAAACAAAAAGAAATATTTTAATCGTTTCTAATCAGAAACATAT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTA-CTGAAACAAAAAGAAATATTTTAATCGTTTCTAATCAGAAACATAT  235

seq1  TTTGTTTTGAATTCCAATGTCAAATCCAGTGGTTCACATTAAAGGATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGAATTCCAATGTCAAATCCAGTGGTTCACATTAAAGGATCTG  285

seq1  CACAGAGGCGGCAAAGATTTCTTTTTTAGTCATTCAAGCTGCCTTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGCGGCAAAGATTTCTTTTTTAGTCATTCAAGCTGCCTTTGCTC  335

seq1  ATGTCACTGTGACCTTACAAAGAACACGGTGTCCGGAAGAACTAAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACTGTGACCTTACAAAGAACACGGTGTCCGGAAGAACTAAAATGT  385

seq1  AGTTCCACATGATCTCATAAAGTACATTAGCTTAGGATTGATTCTATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACATGATCTCATAAAGTACATTAGCTTAGGATTGATTCTATCCC  435

seq1  ATAGGAAAGATTTGGCATAAAGAAAGAACAAAGAAGATCTGATTGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAGATTTGGCATAAAGAAAGAACAAAGAAGATCTGATTGTATTT  485

seq1  TTCTTTAATGAAGTGGATTAAGGTCCATAAGAAGGCTTAGGAGTACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATGAAGTGGATTAAGGTCCATAAGAAGGCTTAGGAGTACAACT  535

seq1  GCAGCATCAGCCATTCGATTTACAGTATCATCAATTTGTGACCAATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATCAGCCATTCGATTTACAGTATCATCAATTTGTGACCAATACAT  585

seq1  GGAAGCATGCCAATGATTTTCAATAATGCTCTTAATTTTAGACCTAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATGCCAATGATTTTCAATAATGCTCTTAATTTTAGACCTAAAGA  635

seq1  AAATACAAAAAATCGGAATGTTGCCAAAGAAATATTATCATTTCCAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAAAATCGGAATGTTGCCAAAGAAATATTATCATTTCCAGGAT  685

seq1  TAACTTGTTACTAGGTAATACTGGATTCTTTCTAACAAACAGAAATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTACTAGGTAATACTGGATTCTTTCTAACAAACAGAAATATCA  735

seq1  TGTTTCATGGAAAGCCTCACATTCTGCAATCAAGAGTTTCTATGAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGGAAAGCCTCACATTCTGCAATCAAGAGTTTCTATGAAACAC  785

seq1  ATCATTGTCTTTCTCTTGCACAAAAATAAACATTGGGTTAGAGAAACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTCTTTCTCTTGCACAAAAATAAACATTGGGTTAGAGAAACAGA  835

seq1  TTGGCCTTGGTTTAGGACATTTGCTGTTAATAAACTAACAAATTACAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGGTTTAGGACATTTGCTGTTAATAAACTAACAAATTACAAGC  885

seq1  CTTTTGTCAAGATGTTCATAGGCAAAAACAAAATAGGATATGAGAAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCAAGATGTTCATAGGCAAAAACAAAATAGGATATGAGAAGCAC  935

seq1  CACAAATATATGTGCAGGGATAATACATGTATAGAATATTATAATCAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATATGTGCAGGGATAATACATGTATAGAATATTATAATCAACA  985

seq1  TTATTTTGATTAATTTATGTATGCTTTATATAAGATGCTCCAGGATTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGATTAATTTATGTATGCTTTATATAAGATGCTCCAGGATTTAT  1035

seq1  GTAGATTTTGTCAACTAGATACAAAGTTATATATAGTTGAGTACAGGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTGTCAACTAGATACAAAGTTATATATAGTTGAGTACAGGAAT  1085

seq1  TC  1102
      ||
seq2  TC  1087

seq1: chr1_81316207_81317307
seq2: B6Ng01-076J18.g_69_1170

seq1  GAATTCAAGGTATTTGATCTCAGGTCATCATGGTAATATGGCAAATGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTATTTGATCTCAGGTCATCATGGTAATATGGCAAATGCTT  50

seq1  TACCCCCTGAGCCATCTCCCTTGGCTTGTCTTAACTTTTTCTTTAATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCTGAGCCATCTCCCTTGGCTTGTCTTAACTTTTTCTTTAATGCT  100

seq1  CACAGTATTCAAGAAGTACCTGAAAATCATGCAATCTTTACATAATTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATTCAAGAAGTACCTGAAAATCATGCAATCTTTACATAATTCTC  150

seq1  CTTAGGAACGGGAGAGGTGGCTCAGCAGCTAAGAACACTGGCTGCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAACGGGAGAGGTGGCTCAGCAGCTAAGAACACTGGCTGCTCTTC  200

seq1  CAGAGGATCAGGGCTTGATTCTCAACATTTCGGAGGCAGCTCACAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATCAGGGCTTGATTCTCAACATTTCGGAGGCAGCTCACAACCAT  250

seq1  TTGTAACTCCTGTCCTAAGCAATCTGATGCCATCTTCTGGCCTCCACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTCCTGTCCTAAGCAATCTGATGCCATCTTCTGGCCTCCACAGG  300

seq1  CACTGCATTCACATAGTACACAGACACACATGCAAGCAAAATACACTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATTCACATAGTACACAGACACACATGCAAGCAAAATACACTCAT  350

seq1  ATACATGAAGATTTTTTAAAAAATCAACGCATCAAAAATATTTTCAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGAAGATTTTTTAAAAAATCAACGCATCAAAAATATTTTCAAAGA  400

seq1  ATACATAAATATTCTAAATATAAACAAATGAATGCATTTATACTTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAATATTCTAAATATAAACAAATGAATGCATTTATACTTTCAGA  450

seq1  GCTGTTTTAAAGTCTATTTTAATATTGATTTTATTGTAATTCTTCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTAAAGTCTATTTTAATATTGATTTTATTGTAATTCTTCTCTCT  500

seq1  TCATTTATAAGCCTTAGCACATGTGCTCCCCCTATCCCGACAAACATACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATAAGCCTTAGCACATGTGCTCCCCCTATCCCGACAAACATACC  550

seq1  ATGTACAGACAAATAAGGAATTTAAAGCATTTCCTGAATGATATAACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGACAAATAAGGAATTTAAAGCATTTCCTGAATGATATAACTAC  600

seq1  TATGAGACACATTACTTGTTAGTATCAACTATTTTAAGCCATGATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACACATTACTTGTTAGTATCAACTATTTTAAGCCATGATTTTAA  650

seq1  AAGATATTGCATTATTAATACTTCCATGTGTTGTTCATAGAAAGATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTGCATTATTAATACTTCCATGTGTTGTTCATAGAAAGATGGCA  700

seq1  CCTTTCAATAATCAATCAGCTTTGGCCTAACCCCTTTTAAATTTTTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAATAATCAATCAGCTTTGGCCTAACCCCTTTTAAATTTTTTCAC  750

seq1  TCATCTCTGAAAATGTAGTTTATTCATCTATAATCAGTAGATATTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGAAAATGTAGTTTATTCATCTATAATCAGTAGATATTTTAAA  800

seq1  CTAGGCTAAAGTGGGTGAACAGTAAGAATTATTCAAAGGTCAATTCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTAAAGTGGGTGAACAGTAAGAATTATTCAAAGGTCAATTCAAAT  850

seq1  TAATGAGATAGTTTAGAAAATATAGTTATCTGAATATTTTAGACTAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGATAGTTTAGAAAATATAGTTATCTGAATATTTTAGACTAAGTA  900

seq1  CAGTGATAATCTGTAAATCATCTGAAGACATCTGGTTTTTACCACAGTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATAATCTGTAAATCATCTGAAGACATCTGGTTTTTACCACAGTGT  950

seq1  GAGACTTAC-TTCACCTCTTGGAATTTCTAGTGTAAGTTTCTCCACAGAC  999
      ||||||||| |||||||||||||||||||||||||  ||||| |||||||
seq2  GAGACTTACTTTCACCTCTTGGAATTTCTAGTGTAGTTTTCT-CACAGAC  999

seq1  AGTTGACCT-ATTGTGGAAGC-ATTTGCTGGCTACATTCTTTATGTCATG  1047
      ||||||||| ||||||||||| |||||||||||||||  || || |||||
seq2  AGTTGACCTAATTGTGGAAGCAATTTGCTGGCTACATCTTTAATTTCATG  1049

seq1  ATGTCAATTGATACTTGAAAATTTGTTCCCATCAAATGTGAAAAAGAGGT  1097
      ||||||| ||||||||||||||||| |||||| ||||||| |||||||||
seq2  ATGTCAAATGATACTTGAAAATTTGGTCCCAT-AAATGTGGAAAAGAGGT  1098

seq1  CTTT  1101
      ||||
seq2  CTTT  1102