BAC Information

Click to search

BAC

Clone NameB6Ng01-077J12
Chromosome1 (Build37)
Map Location 87,402,745 - 87,403,959
singlet/doubletsinglet
Overlap geneLOC100040213, LOC100039794
Upstream genenone
Downstream geneEG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077J12.bB6Ng01-077J12.g
ACCDH893526DH893527
length1,2731,195
definitionDH893526|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J12, 5' end.DH893527|Mus musculus domesticus DNA, BAC clone: B6Ng01-077J12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttgccatattttgttttattttgttttttaagaatttgctgt
tcttttattagaatcaagttgctacagtcataaaatgctgactcgtggga
taaccaaaaaagaacctcaagaaaatgactgaattgatatgcaaatgaaa
gactgggctttggtctgcaagagctaagcaacctggatgagctgtctgga
gagaaaacagagttcttttagaatttttttctagcagctacccagagaga
actgcttggagagcaaatacaggtcttttacaatctttttcctgcaagag
agcaaaagagagctgtctcaggcagaggaaactgtctcatgcagaaagct
gtcttgagcagaaagctatcttgagcatactacagatccaagagctatct
acagagagctgtctagggagccatcttgagcagattacaaggctaatcag
cttgtacccatgatttgacatttagtcatttttttggttggtggtgaaca
ctctccttcctcagaaccctctccaagctgaggttgatccttagcagaac
tcaagaagttagataccaataatccaaataacccaattaaaaaatgaggt
acagagctaaatagagaattttcaacaaaggaatcttgaatggctgaaaa
acacctaaagaaatgttcaacatccttagtcatcagggaaatgcaaatca
aaacaactctgagattccaccttacacctatcagaatggctaagatcaaa
aactcaaagaacaacacatgctgacaaggttgtggagcaagagaaatact
cctacactgctgggggaggacaaacttgtacaaccactctggaagtcaac
ttggcagttgctcagaaaattgggaatagttctacctcaagacccagcta
taccacacctgagcatgtacccagaagatgtgccaccatcccacaaggac
atttgctcaactatgctcagcagttttattcataataaaagaaactggaa
acaacccagattccctcactaaagatgagacagaatgtggctcattacac
gtggactactacttcacccattaaaacaagaatatcagaatttctccaac
aaatggatagacttaaaatatcatcctagttgaggtaaccgaccaaaaga
ctgcctaaatgtactccttttatggatgttagccataagtacgatatcct
gtctattcctttaaccacgactaggagtcaatatacagaaggtccagaga
gagagagggtgaatctttttctc
gaattcacattgcttagctcatctgctgtagtgacttttcatccttccct
tctgtgatacagggagtcacagctcttaactccagtcctgggctgagagc
tagagacaagcatgacataagatatagtcacctgagaggtggtcccacta
ctgcccactgtgctagaattccctacttcaccctattggtcattgtttaa
tgtagatagcaactttgacaaaatacttggggtcagtcagggctactgtt
acaatcttctcttccagtcattgggcattctgtgtatactttgtaattaa
gcatcacacagaggagaaaataatgctttgcttgggaaaagagattctgg
gtatctcaatgcagacatgatggttgtaatgagaacacaagactttctga
cacaaaccagtcatcaccagcaagtttaaacagtcctatcataagttgag
aagctggcatgtgatgctgactgtgacacagaaatttccagagtccacac
ttctgagcagatgaagctgggagacttgtaaaaatggaaatggatcttgg
attctgtttctctgggaattctgttcttacaaacagaaacacaaaataag
aggcaactgcctcttgttgctatgaaatactgcacccaagaattaaggat
ggtttcatcggctgaacagttctagcttgtttgagagacccagtctgaga
tgttcttagcatgctggggaaggtagaggtactggcctttaaagtaattg
ttggacaggttatatcgtagcttccttctagaaaatggagtaggcaaaac
atcctggggattcagaattcaagcaagctagacaataatgccaaggacaa
attatacgatagcctggagttcagattcttagtgagctttgaagccagag
ttcagtgatatgtggcctgttgacgtctatgctaatagcatactaacttc
tccaacttaaagcagtcacattcaagagatgtagctctacacacatacag
agcatgggggaggaagaaacagctgaaccagaagatgcagtgaggaggaa
atgaagtgacgttagatacaccccacttaggcgccccatcagtaagatgc
tgttggaaaacctcacatgggtggacactcaccctctttttctttggatg
tatccgggaggaatggcagaaattctctgcctagaataaggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87402745_87403959
seq2: B6Ng01-077J12.g_70_1264 (reverse)

seq1  AGGTCCTTTTATCT-TGCAGAGAAATTTTCTACCCAATCCTCCACGGATA  49
      |||||||| | |||  ||||||||  |||||  ||| |||||| ||||||
seq2  AGGTCCTTAT-TCTAGGCAGAGAA--TTTCT-GCCATTCCTCC-CGGATA  45

seq1  CATCTCAAAAGAAAAGA-GGTGAGTGCTCA-CCATGTGAGTTTTACACAC  97
      |||| ||||  |||||| ||||||||  || ||||||||| ||| |  ||
seq2  CATC-CAAAGAAAAAGAGGGTGAGTGTCCACCCATGTGAGGTTTTCCAAC  94

seq1  AGCATCTTACTGAT--GGCGCCTAAATTGGGTTGTTATCCTTAACATCAC  145
      ||||||||||||||  ||||||||| | ||||   ||||  |||| ||||
seq2  AGCATCTTACTGATGGGGCGCCTAAGTGGGGT--GTATC--TAACGTCAC  140

seq1  CTCTCATTTCCTCCTCTACTGCCTTCTTTTCTGGTTTTCAGCCTGTGTCT  195
         ||||||||||||| |||||    | ||||||  ||||| |||| |||
seq2  --TTCATTTCCTCCTC-ACTGC---ATCTTCTGG--TTCAG-CTGTTTCT  181

seq1  TCCTTCCCCCATGCTCTTGTATTGTGTGTAGAGCTACATCCTCCTTGAAT  245
      ||| |||||||||||| |||| ||||||||||||||||||   |||||||
seq2  TCC-TCCCCCATGCTC-TGTA-TGTGTGTAGAGCTACATC--TCTTGAAT  226

seq1  GTTGACTGCTTTAAGTTGGAGAAGTTAGTATGCTATTAGCATAGACTTCA  295
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  G-TGACTGCTTTAAGTTGGAGAAGTTAGTATGCTATTAGCATAGACGTCA  275

seq1  ACAGGCCACATATCACTGAACTCTGGCTTCAAAGCTCACTAAAAATCTGA  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACAGGCCACATATCACTGAACTCTGGCTTCAAAGCTCACTAAGAATCTGA  325

seq1  ACTCCAGGCTATCGTATAATTTGTCCTTGGCATTATTGTCTAGCTTGCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGCTATCGTATAATTTGTCCTTGGCATTATTGTCTAGCTTGCTT  375

seq1  GAATTCTGAATCCCCAGGATGTTTTGCCCACTCCATTTTCTAGAAGGAAG  445
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTGAATCCCCAGGATGTTTTGCCTACTCCATTTTCTAGAAGGAAG  425

seq1  CTACGATATAACCTGTCCAACAATTACTTTAAAGGCCAGTACCTCTACCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGATATAACCTGTCCAACAATTACTTTAAAGGCCAGTACCTCTACCT  475

seq1  TCCCCAGCATGCTAAGAGCATCTCAGTCTGGGTCTCTCAAACAAGCTAGA  545
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  TCCCCAGCATGCTAAGAACATCTCAGACTGGGTCTCTCAAACAAGCTAGA  525

seq1  ACTGTTCAGCCGATGAAACCATCCTTAATTCTTGGGTGCAGTATTTCATA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCAGCCGATGAAACCATCCTTAATTCTTGGGTGCAGTATTTCATA  575

seq1  GCAACAAGAGGCAGTTGCCTCTTATTTTGTGTTTCTGTTTGTAAGAACAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGAGGCAGTTGCCTCTTATTTTGTGTTTCTGTTTGTAAGAACAG  625

seq1  AATTCCCAGAGAAACAGAATCCAAGATCCATTTCCATTTTTACAAGTCCC  695
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATTCCCAGAGAAACAGAATCCAAGATCCATTTCCATTTTTACAAGTCTC  675

seq1  CCAGCTTCATCTGCTCAGAAGTGTGGACTCTGGAAATTTCTGTGTCACAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTCATCTGCTCAGAAGTGTGGACTCTGGAAATTTCTGTGTCACAG  725

seq1  TCAGCATCACATGCCAGCTTCTCAACTTATGATAGGACTGTTTAAACTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCACATGCCAGCTTCTCAACTTATGATAGGACTGTTTAAACTTG  775

seq1  CTGGTGATGACTGGTTTGTGTCAGAATGTCTTGGATTCTCATTACAACCA  845
      |||||||||||||||||||||||||| ||||||  |||||||||||||||
seq2  CTGGTGATGACTGGTTTGTGTCAGAAAGTCTTGTGTTCTCATTACAACCA  825

seq1  TCACGTCTGCATTGAGATACCCAGAGTCTCTTTTCCCAAGCAAAGCCTTA  895
      ||| ||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TCATGTCTGCATTGAGATACCCAGAATCTCTTTTCCCAAGCAAAGCATTA  875

seq1  TTTTCTCGTCTGTGTGATGCTTAATTACAAAGTATACACAGAATGCCCAA  945
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTCTGTGTGATGCTTAATTACAAAGTATACACAGAATGCCCAA  925

seq1  TGACTGGAAGAGAAGATTGTAACAGTAGCCCTGACTGACCCCAAGTATTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAAGAGAAGATTGTAACAGTAGCCCTGACTGACCCCAAGTATTT  975

seq1  TGTCAAAGTTGCTATCTACATTAAACAATGACCAATAGGGTGAAGTAGGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGTTGCTATCTACATTAAACAATGACCAATAGGGTGAAGTAGGG  1025

seq1  AATTCTAGCACAGTGGACAGTAGCGGGACCACCTCTCAGGTGAGTATATC  1095
      |||||||||||||||| |||||| ||||||||||||||||||| ||||||
seq2  AATTCTAGCACAGTGGGCAGTAGTGGGACCACCTCTCAGGTGACTATATC  1075

seq1  TTACGTCATGCTTGTCTCTAGCTCTCAGCCCAGGACTGGAGTTAAGAGCT  1145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCATGCTTGTCTCTAGCTCTCAGCCCAGGACTGGAGTTAAGAGCT  1125

seq1  GTGACTCCCTGTATCACAGAAGGGAAGGATGAAAAGTCACTACAGCAGAT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCCTGTATCACAGAAGGGAAGGATGAAAAGTCACTACAGCAGAT  1175

seq1  GAGCTAAGCAATGTGAATTC  1215
      ||||||||||||||||||||
seq2  GAGCTAAGCAATGTGAATTC  1195