BAC Information

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BAC

Clone NameB6Ng01-077M11
Chromosome1 (Build37)
Map Location 85,077,025 - 85,100,904
singlet/doubletdoublet
Overlap geneA530032D15Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723
Downstream geneLOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077M11.bB6Ng01-077M11.g
ACCDH893664DH893665
length796981
definitionDH893664|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M11, 5' end.DH893665|Mus musculus domesticus DNA, BAC clone: B6Ng01-077M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,100,109 - 85,100,904)(85,077,025 - 85,077,997)
sequence
gaattcctttacctatttttttgttgtctcattttgtttttcttttttgc
agtactggggatcaattctggggattctcttgagaatgacttttggagaa
actttcatatcttgtctctgttttttctaaacagtgtgtgagcatgttcg
ctgcttattacttcgtggcatttgtagtttagttttgacaccttggcact
tttgtatttctgactaatttgctgcattttctagttggatcagtgcatca
catgtgaaactgcagtatttgaatttaccgtctgtgaaataatttagttc
caactcagattttatggggagctcatttcagattccacatgaaaccaggg
tgtagtggtgtgtgtttttaactccagaattagggaaatatagacagttg
gatccccggagatgactggccagctaatctggctgaactaatgatatccg
ggttcagtgagagaccccatctcaaaacataaggtggagagcaactggac
tccttgcccagacatatgccatgcacatacacacgagcaagcatgtgtat
atacatagacagcctccttaagtttaaaataaaaattattgtatattttt
atatgttactacatataaattttaggttctttaaaaaaaagaccctctca
agatttttttggtaacagataacttttgatattctttgtgtttgtttgtt
gtgtagtcctgacttgtctggaacttgctatatagaccaggctggccttg
aattcatggagatcctcatgcctcctgcctctgcctccgaagagct
gaattcaataaaattgtcctgactcccactcactctggtaagccccactg
attgcttcatgaaacatacagctgttgctgggttatggcaggagctgtcc
agatgtgctatttactaaagatggtagccagatatggtccttttatctcc
ccattttagtactaacttggtgagcagggagaggagatgataggcagagc
tgggtggatcaattcgaatttatctgtatgtctgccctgcttcatttctc
cctgacaagagtgttttgtgtctgtagctgatagaaaggcccagatagct
ctagaacaatctgaaaacaatacaggaggtggagatatgcaactccacag
aagtagagatgaatatacctcaaggaagagaagataagtttgctctccct
gccatcagtgcagagactttgatggagtgggactgggagggagcctgcag
tgaactgtccatggtgctgagactaagtttgtgatcaatactgcaatgga
ctgaaggggttgaagtagatgacactcttaacgttagaaatgagtctgag
gtgagagacaaaggacttgtccaagtctgtttttgttcaaaagtacagaa
aacttggactcaggtcttttgcccaacactctgggtcaccttcttgtaca
atcactgctgggtgacaccctgtgtgtggcagagattgtatcccactctt
tgagagtctgcaggtcaaggcaggcagtcttgtagtggcccggggctctg
gaccttgtttcagctgcagcatcaaaattctttgttactctctcagacac
agtgagtagataggaagcatcttggtagggtaattcagctgcatacgctg
ttatagaaaactaattcttcttgctttcctctctgtggatggcaggacca
cgaggcacataaggtcgtccactcaaattggctttcaaggaattatcctt
ctcttgttcgagatgcccctgagactctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85100109_85100904
seq2: B6Ng01-077M11.b_48_843 (reverse)

seq1  AGCTCTTCGGAGGCAGAGGCAGGAGGCAGGAGGATCTCCATGAATTCAAG  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCTCTTCGGAGGCAGAGGCAGGAGGCATGAGGATCTCCATGAATTCAAG  50

seq1  GCCAACCTGGTCTATATAGCAAGTTCCAGACTAGTCAGGACTACACAACA  100
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCCAGCCTGGTCTATATAGCAAGTTCCAGACAAGTCAGGACTACACAACA  100

seq1  AACAAACACAAAGAATATC-AAAGTTATCTGTTACCAAAAAAATCTTGAG  149
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACAAACACAAAGAATATCAAAAGTTATCTGTTACCAAAAAAATCTTGAG  150

seq1  AGGGTCTTTTTTTTTAAAGAACCTAAAATTTATATGTAGTAACATATAAA  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTC-TTTTTTTTAAAGAACCTAAAATTTATATGTAGTAACATATAAA  199

seq1  AAAATACAATAATTTTTATTTTAAACTTAAGGAGGCTGTCTATGTATATA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAATAATTTTTATTTTAAACTTAAGGAGGCTGTCTATGTATATA  249

seq1  CACATGCTTGCTTGTGTGTATGTGCCTGGCATATGCCTGGGCAAAGAGTC  299
      |||||||||||| |||||||||||| ||||||||| |||||||| |||||
seq2  CACATGCTTGCTCGTGTGTATGTGCATGGCATATGTCTGGGCAAGGAGTC  299

seq1  CAGTTGTTCTCCACCTTATGTTTTGAGATGGGGTCTCTCACTGAACCCGG  349
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTCTCCACCTTATGTTTTGAGATGGGGTCTCTCACTGAACCCGG  349

seq1  ATATCATTAGTTCAGCCAGATTAGCTGGCCAGTCATCTCCGGGGATCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAGTTCAGCCAGATTAGCTGGCCAGTCATCTCCGGGGATCCAA  399

seq1  CTGTCTATATTTCCCTAATTCTGGAGTTAAAAACACACACCACTACACCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATATTTCCCTAATTCTGGAGTTAAAAACACACACCACTACACCC  449

seq1  TGGTTTCATGTGGAATCTGAAATGAACTCCCCATAAAATCTGAGTTGGAA  499
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGTTTCATGTGGAATCTGAAATGAGCTCCCCATAAAATCTGAGTTGGAA  499

seq1  CTAAATTATTTCACAGACGGTAAATTCAAATACTGCAGTTTCACATGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTATTTCACAGACGGTAAATTCAAATACTGCAGTTTCACATGTGA  549

seq1  TGCACTGATCCAACTAGAAAATGCAGCAAATTAGTCAGAAATACAAAAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGATCCAACTAGAAAATGCAGCAAATTAGTCAGAAATACAAAAGT  599

seq1  GCCACGGTGTCAAAACTAAACTACAAATGCTACGAAGTAATAAGCAGCGA  649
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCAAGGTGTCAAAACTAAACTACAAATGCCACGAAGTAATAAGCAGCGA  649

seq1  ACATGCTCACACACTGTTTAGAAAAAACAGAGACAAGATATGAAAGTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCACACACTGTTTAGAAAAAACAGAGACAAGATATGAAAGTTTC  699

seq1  TCCAAAAATCATTCTCAAGAGAATCCCCAGAATTGATCCCCAGTACTGCA  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGTCATTCTCAAGAGAATCCCCAGAATTGATCCCCAGTACTGCA  749

seq1  AAAAAGAAAAACAAAATGAGACAACAAAAAAATAGGTAAAGGAATTC  796
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAACAAAATGAGACAACAAAAAAATAGGTAAAGGAATTC  796

seq1: chr1_85077025_85077997
seq2: B6Ng01-077M11.g_74_1052

seq1  ATTCAATAAAACTGTCCTGACTCCCACTCACTCTGGTTAGCCCCACTGAT  50
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  ATTCAATAAAATTGTCCTGACTCCCACTCACTCTGGTAAGCCCCACTGAT  50

seq1  TGCTTCATGAAACATACAGCTGTTGCTGGGTTATGGCAGGAGCTGTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGAAACATACAGCTGTTGCTGGGTTATGGCAGGAGCTGTCCAG  100

seq1  ATGTGCTATTTACTAAAGATGGTAGCCAGATATGGTCCTCTTATCTCCCC  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTGCTATTTACTAAAGATGGTAGCCAGATATGGTCCTTTTATCTCCCC  150

seq1  ATTTTAGTACTAACTTGGTGAGCAGGGAGAGGAGATGATAGGCAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTACTAACTTGGTGAGCAGGGAGAGGAGATGATAGGCAGAGCTG  200

seq1  GGTGGATCAATTCGAATTTATCTGTATGTCTGCCCTGCTTCATTTCTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCAATTCGAATTTATCTGTATGTCTGCCCTGCTTCATTTCTCCC  250

seq1  TGACAAGAGTGATTTGTGTCTGTAGCTGATAGAAAAGCCCAGATAGCTCT  300
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  TGACAAGAGTGTTTTGTGTCTGTAGCTGATAGAAAGGCCCAGATAGCTCT  300

seq1  AGAACAATCTGAAAGCAATACAGGAGGTGGAGAGATGCAACTCCACAGAA  350
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AGAACAATCTGAAAACAATACAGGAGGTGGAGATATGCAACTCCACAGAA  350

seq1  GTAGAGATGAAAACACCTCAAGGAAGAGAAGATAAGTTTGCTCTCCCTGC  400
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATGAATATACCTCAAGGAAGAGAAGATAAGTTTGCTCTCCCTGC  400

seq1  CATCAGTGCAGAGACTTTGATGGAGTGGGACTGGGAGGGAGCCTGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGCAGAGACTTTGATGGAGTGGGACTGGGAGGGAGCCTGCAGTG  450

seq1  AACTGTCCATGGTGCTGAGACTAAGTTTGTGATCAAGCCTGCAATGGACT  500
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  AACTGTCCATGGTGCTGAGACTAAGTTTGTGATCAATACTGCAATGGACT  500

seq1  GAAGGGGTTGAAGTAGATGACCCTCTTAACGTTAGAAATGAGTCTGAGGT  550
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGGGGTTGAAGTAGATGACACTCTTAACGTTAGAAATGAGTCTGAGGT  550

seq1  GAGAGACAAAGGACTTGTCCAAGTC-CATTTTGGTCAAAAAAAGAGAAAA  599
      |||||||||||||||||||||||||   ||||| ||||||  | ||||||
seq2  GAGAGACAAAGGACTTGTCCAAGTCTGTTTTTGTTCAAAAGTACAGAAAA  600

seq1  CGTGGACTCAGGTC-TTTGCCCAACACTCTGGGTCACCTTCTTGTACAAT  648
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCAGGTCTTTTGCCCAACACTCTGGGTCACCTTCTTGTACAAT  650

seq1  CACTGCTGGGTGACACCCTGTGTGTGGCAGAGATTGTAT-CCACTC-TTG  696
      ||||||||||||||||||||||||||||||||||||||| |||||| |||
seq2  CACTGCTGGGTGACACCCTGTGTGTGGCAGAGATTGTATCCCACTCTTTG  700

seq1  AGAGTCTGCAGGTCAAGGCAGGCAGTCTTGTAGTGGCCCAGGGCTCTGGA  746
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGTCTGCAGGTCAAGGCAGGCAGTCTTGTAGTGGCCCGGGGCTCTGGA  750

seq1  CCTTGTTTCAGCTGCAGCATCAAAATTC-TTGTTACTCTCTCAGACACAG  795
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTTGTTTCAGCTGCAGCATCAAAATTCTTTGTTACTCTCTCAGACACAG  800

seq1  TGAGTAGATAGGAAGCATCTTGGTA-GGTAATTCAGCTGCATACGCTGTT  844
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAGTAGATAGGAAGCATCTTGGTAGGGTAATTCAGCTGCATACGCTGTT  850

seq1  ATAG-AAACTAAAAC-TCTTGC-GTCCTCTCTGTGGATGGCGGGACCACC  891
      |||| |||||||  | ||||||  ||||||||||||||||| ||||||| 
seq2  ATAGAAAACTAATTCTTCTTGCTTTCCTCTCTGTGGATGGCAGGACCACG  900

seq1  AGGCAATACAAGGTCTTCCACTCAAACTGGCTTTCAAAGGAACTATCCTC  941
      |||| | | |||||| |||||||||| |||||||| |||||| |||||| 
seq2  AGGC-ACATAAGGTCGTCCACTCAAATTGGCTTTC-AAGGAATTATCCTT  948

seq1  CTCCTGGTTCGAGATGCCACTGAGACTCTAGA  973
      || || |||||||||||| |||||||||||||
seq2  CT-CTTGTTCGAGATGCCCCTGAGACTCTAGA  979