BAC Information

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BAC

Clone NameB6Ng01-078A20
Chromosome1 (Build37)
Map Location 65,905,316 - 65,906,488
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078A20.bB6Ng01-078A20.g
ACCDH893860DH893861
length1,2151,175
definitionDH893860|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A20, 5' end.DH893861|Mus musculus domesticus DNA, BAC clone: B6Ng01-078A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaactcttcagctggggaacagggtacccgtaagtatagcttt
acaaggtaagtctggtcttgaactttctaacgaaattcaagacagtctat
cagaagtaaagtgggaaatagctttacaaggtatgtttggccttgaactt
tctctagtgttaggagcctttttgttccttttcacatgttatcaagcggt
taagacagggctgaaaattctggatgaaattcagggcaatctatcagaag
taaagcggggagagagagtaggagcaaagaggaaatatggaacacaaaat
aagtatacaggcctttccacgggtcttgaacccgaggaaaagtttaggtc
aggtaagaatacctggggagagattagaaggaaggaaaagaaaaaagatt
aattagcggaggtctctaggagaaggagactatactcatcactaggtgag
ctcaaggagccagttcttaatagctctgaatcagatgaaaaggctattag
ggcctggaaggcgctctcccgagcaggtgaagccactggacaactaacaa
agatcgtccagggacctcaggagtcattctcagattttgtggccagaatg
acagaggcagcagagcgtatttttggagattcagagcaagtcgtacctct
ggtagaatagcttatttatgagcaagccacgcaggaatgcagagcggcca
tagccccaagaaagaacaaaggtttacaagactggctcagggtttgtcgg
gagcttgggggacctctcattatgtgttacttccattcagtatgagaaat
ttactagggcagctaatttgtcaaaaagtctttctcagtatatgtacaga
attggacgggctgaatttgaacagacccttcgggaaattgagaattgcca
tcatttcaggtcaactccacgcgcttggacctgtccctgaaccaaaggat
tacccaattggatctcctcagcattttcttcgttaaagaatgggtggatt
gatattattggagatacactttgctgtgaattagtgttgctctctgggtt
gtcgttagctaagtctaacctagagaagacagggtgataatgctcagcgc
cttgcagcactagaaacatgagtgcttcctgatatatctatgcttaagca
atagtcctgccactcagcttgacacctcaaagcctagttcattgtcaacg
ggaatgacagtgagt
gaattctgggagaagaagtaatcttcaaaatacagttaggaagaaataat
aagttcttttcaaagctcagtaggaggaataaaacttacaatgacaaagt
agatacttgataattataagaaagaagtggagcctgaaaatgccatgata
atagggagataaaaataatatttatcttaattttattggtacatattatg
tatgccatctttttcctgataactgtgtaaaattattatatgaaaatttt
agaaaatatctggggagaaaaaatcttaactaccctattttgatcatcct
ctttgataccctgaattcagcatatttgaacatatatacatgtttcctat
tatcaaacttgtcatataagtttaaacaattacaataagtcaagaaaata
atttatatggagacatttcttcctggtgttagaaaacaagggaaagtctt
tttaaaaggctagaccttcttctgggtatcattggtaaaaattaatagaa
tgagaagaaaggctgttggtacgcattttaatacagtatactgaaaccca
atgaaacacagccttttcagaatttgctacacttataagtaaatgattgc
tagccataaaactactttttctgttcaaattgtattcatagtactatttt
aacttaaaaaaattaacaaagatgttttgataagattttaagaaacatca
cttaaattggattataatttttcaaattcacaaatcacagtctacccatt
actttagtttttaaagacagaaaaaatattttcttgagcaagtgaatagc
aaggaacttgtgcttagacacagaatccaagagcatcatcaaatggcagt
tgattcaaaatagatcacatagacactattataaaaccttgatggacatc
tacagagttgcaactgctgtgctttctagaataaacatttctgttattaa
atttcttatgaaaaaaccaccccacacacaaaaaaaaaacaaatcaagag
ccattacaaattcatattcttctcatgactaagatgagaatttcatttga
cacagctgtctacaagccacttttactggagtatctgttacatggagaag
gtgtgtatttgttttttagaagcctatgttctactggaaaattgcaaccc
aatgttaaggaaaatacttggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_65905316_65906488
seq2: B6Ng01-078A20.g_65_1239 (reverse)

seq1  ATCTCCAAGTATGTCTCCT--ACATTGGTTTTCATTTTTCCAGTAGGACA  48
      |||||||||||| | ||||  ||||||| || || ||||||||||| |||
seq2  ATCTCCAAGTAT-TTTCCTTAACATTGGGTTGCAATTTTCCAGTAGAACA  49

seq1  TAGGC-TCTGAAAAACAAATACACACTTTCT-CATGTAACAGATACT-CA  95
      ||||| ||| |||||||||||||||| |||| ||||||||||||||| ||
seq2  TAGGCTTCTAAAAAACAAATACACACCTTCTCCATGTAACAGATACTCCA  99

seq1  GT-AAAGTGGCTTGTAGACAGCTGGTGTCAAATGAAATTCTCATCTTTAG  144
      || |||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  GTAAAAGTGGCTTGTAGACAGCT-GTGTCAAATGAAATTCTCATC-TTAG  147

seq1  TCATTGAGAAGATATTGAAATTTGT-ATGGCTCTTGATTTGTTTTTTTTT  193
      ||| |||||||| ||   ||||||| ||||||||||||||||||||||||
seq2  TCA-TGAGAAGA-ATATGAATTTGTAATGGCTCTTGATTTGTTTTTTTTT  195

seq1  TGTGTGTGTGTGGTTTTTTTCATTAAGAAATTTAATAACAG-AATGTTTA  242
      |||||||| |  | |||||||| |||||||||||||||||| ||||||||
seq2  TGTGTGTGGGGTGGTTTTTTCA-TAAGAAATTTAATAACAGAAATGTTTA  244

seq1  TTCTAG-AAGCACAGCAGTTGCAACTCTTGTAGATGTCCATCAAGGTTTT  291
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTAGAAAGCACAGCAGTTGCAACTC-TGTAGATGTCCATCAAGGTTTT  293

seq1  ATAATAGTGTCTATGTGATCTATTTTGAATCAACTGCCATTTGATGATGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTGTCTATGTGATCTATTTTGAATCAACTGCCATTTGATGATGC  343

seq1  TCTTGGATTCTGTGTCTAAGCACAAGTTCCTTGCTATTCACTTGCTCAAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGATTCTGTGTCTAAGCACAAGTTCCTTGCTATTCACTTGCTCAAG  393

seq1  AAAATATTTTTTCTGTCTTTAAAAACTAAAGTAATGGGTAGACTGTGATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTTTCTGTCTTTAAAAACTAAAGTAATGGGTAGACTGTGATT  443

seq1  TGTGAATTTGAAAAATTATAATCCAATTTAAGTGATGTTTCTTAAAATCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTTGAAAAATTATAATCCAATTTAAGTGATGTTTCTTAAAATCT  493

seq1  TATCAAAACATCTTTGTTAATTTTTTTAAGTTAAAATAGTACTATGAATA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACATCTTTGTTAATTTTTTTAAGTTAAAATAGTACTATGAATA  543

seq1  CAATTTGAACAGAAAAAGTAGTTTTATGGCTAGCAATCATTTACTTATAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGAACAGAAAAAGTAGTTTTATGGCTAGCAATCATTTACTTATAA  593

seq1  GTGTAGCAAATTCTGAAAAGGCTGTGTTTCATTGGGTTTCAGTATACTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAAATTCTGAAAAGGCTGTGTTTCATTGGGTTTCAGTATACTGT  643

seq1  ATTAAAATGCGTACCAACAGCCTTTCTTCTCATTCTATTAATTTTTACCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGCGTACCAACAGCCTTTCTTCTCATTCTATTAATTTTTACCA  693

seq1  ATGATACCCAGAAGAAGGTCTAGCCTTTTAAAAAGACTTTCCCTTGTTTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATACCCAGAAGAAGGTCTAGCCTTTTAAAAAGACTTTCCCTTGTTTT  743

seq1  CTAACACCAGGAAGAAATGTCTCCATATAAATTATTTTCTTGACTTATTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCAGGAAGAAATGTCTCCATATAAATTATTTTCTTGACTTATTG  793

seq1  TAATTGTTTAAACTTATATGACAAGTTTGATAATAGGAAACATGTATATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTAAACTTATATGACAAGTTTGATAATAGGAAACATGTATATA  843

seq1  TGTTCAAATATGCTGAATTCAGGGTATCAAAGAGGATGATCAAAATAGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAATATGCTGAATTCAGGGTATCAAAGAGGATGATCAAAATAGGG  893

seq1  TAGTTAAGATTTTTTCTCCCCAGATATTTTCTAAAATTTTCATATAATAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAGATTTTTTCTCCCCAGATATTTTCTAAAATTTTCATATAATAA  943

seq1  TTTTACACAGTTATCAGGAAAAAGATGGCATACATAATATGTACCAATAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACAGTTATCAGGAAAAAGATGGCATACATAATATGTACCAATAA  993

seq1  AATTAAGATAAATATTATTTTTATCTCCCTATTATCATGGCATTTTCAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATAAATATTATTTTTATCTCCCTATTATCATGGCATTTTCAGG  1043

seq1  CTCCACTTCTTTCTTATAATTATCAAGTATCTACTTTGTCATTGTAAGTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTTCTTTCTTATAATTATCAAGTATCTACTTTGTCATTGTAAGTT  1093

seq1  TTATTCCTCCTACTGAGCTTTGAAAAGAACTTATTATTTCTTCCTAACTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTCCTACTGAGCTTTGAAAAGAACTTATTATTTCTTCCTAACTG  1143

seq1  TATTTTGAAGATTACTTCTTCTCCCAGAATTC  1173
      ||||||||||||||||||||||||||||||||
seq2  TATTTTGAAGATTACTTCTTCTCCCAGAATTC  1175