BAC Information

Click to search

BAC

Clone NameB6Ng01-078E15
Chromosome1 (Build37)14 (Build37)
Map Location 190,081,406 - 190,082,43250,889,462 - 50,889,914
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGpatch2, Esrrg, 9330162B11Rik
Downstream geneUsh2a, Kctd3, Kcnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078E15.bB6Ng01-078E15.g
ACCDH894027DH894028
length1,031960
definitionDH894027|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E15, 5' end.DH894028|Mus musculus domesticus DNA, BAC clone: B6Ng01-078E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(190,081,406 - 190,082,432)(50,889,462 - 50,889,914)
sequence
gaattcacctgccagcctaactctgggtccttgcccaggcagaggagaaa
gaatggacaggaagtagatggcctgccacatgctattgaaggtatcacat
tctccctgcatccagggcagcctgaaacatcaacgcaaagcgttcgtgcc
tcagaggaacacaatcttggatcatcgcagagcctgcatggatgagtcac
acgtgttcaaacatttccagcaagctgacagaagaggagctacgaggacc
tagatactaagtaaaaccaaagccaaagattccagaattaccaacaatat
gctttatagtaatttgaaaatattcagaaaaatatgaaaatccgatgatc
tacaccagagttgtgggtctgcagaatatttgtctcatggggtagcattg
tctaaactccgtctctgcactcaggcaattctgttatttataaactccct
caaggtccacattcatgtctgcactctctacttttaggaaaaccccaatg
actgaggttatacaaagccagtgttcctgcatacagtgcctagtctagac
gatgctgacctgtcttttctcacgtgtgtgacaaccccacctataccgct
cattctcttaacgtatttattcatggagtgattttctctgcctggttcgt
agcattgtcgaaaagattaaataggtaatccagaaaagaaatagtactac
catatagcaattgacaaactggggatcaagtttgtcaagagacaccaaga
gtggtatttctcctacatctgaggatgctctcttctgtgtgctgttacag
aaatatatatatatatatatatatatatatatatatatatatatatatat
atattaattataacgcatcgtgctaatgaaacagagagaggacaagccat
gaaatctagtcacgtcccaagctctttacatttagctactcagcaccctt
tcgtacatgggttatgggaattccatctttttggatgaagaagttgacgc
ccaagaagtttggatgggcctatcccagaaa
gaattctcttttctcttgttttgctatttcatactatacattttattttt
attttattatttttacttcaggttatttttttaattattctagtccccct
ccagtaggctttttgtttgtttgtttttgttttgcatacccagaatggca
tgttctaccttgctccccctgtcttctatctatgtactgtctgtctgtct
gcctgtctatctgtctgtcttctgtctatgatatatgtctgaatctgtac
ctgtttaattctctcttgcttgtctctccctgtggctgtgaccctaatga
aaagctttgctatttgttgaacagagaagaaatcatcatgtttggaaaga
acaggggatgttttacagaaatctttaagaaagctttataaaggatgaat
tttactgactctaagtggcctcattgattcagatcataaacaaatgagta
ttatcaagcaatgtactagcaagcaatatttatatgctgcatgcaatatt
catggtgggtatttctttttttttcttttttcttattttatttttttatt
agatattttctttatttacattttaaatgttatcctctttcctagtctcc
cctatgaaaacacactatcccttcccctccttcccctgctcaccaaccta
ccctctcctgcttcctggccctggaagtcctctatactgaggcatagaac
cttcataggtctaagggcctctcctcccattggtggctgactaggccatc
ctgtgctacatatgcagctgcagccatgagttcctccatgtgtttttctt
tggttggtggtttagtcccagggtgctctggagatactggttagttatat
tgttgttcctcctatggggctgcaaacccctttcagctccttgtgtactt
tctctagctcctcattggggaccctgtgctcagtccaatggatggctgtg
atatccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190081406_190082432
seq2: B6Ng01-078E15.b_43_1073

seq1  GAATTCACCTGCCAGCCTAACTCTGGGTCCTTGCCCAGGCAGAGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGCCAGCCTAACTCTGGGTCCTTGCCCAGGCAGAGGAGAAA  50

seq1  GAATGGACAGGAAGTAGATGGCCTGCCACATGCTATTGAAGGTATCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGACAGGAAGTAGATGGCCTGCCACATGCTATTGAAGGTATCACAT  100

seq1  TCTCCCTGCATCCAGGGCAGCCTGAAACATCAACGCAAAGCGTTCGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCATCCAGGGCAGCCTGAAACATCAACGCAAAGCGTTCGTGCC  150

seq1  TCAGAGGAACACAATCTTGGATCATCGCAGAGCCTGCATGGATGAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAACACAATCTTGGATCATCGCAGAGCCTGCATGGATGAGTCAC  200

seq1  ACGTGTTCAAACATTTCCAGCAAGCTGACAGAAGAGGAGCTACGAGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTTCAAACATTTCCAGCAAGCTGACAGAAGAGGAGCTACGAGGACC  250

seq1  TAGATACTAAGTAAAACCAAAGCCAAAGATTCCAGAATTACCAACAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACTAAGTAAAACCAAAGCCAAAGATTCCAGAATTACCAACAATAT  300

seq1  GCTTTATAGTAATTTGAAAATATTCAGAAAAATATGAAAATCCGATGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATAGTAATTTGAAAATATTCAGAAAAATATGAAAATCCGATGATC  350

seq1  TACACCAGAGTTGTGGGTCTGCAGAATATTTGTCTCATGGGGTAGCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGAGTTGTGGGTCTGCAGAATATTTGTCTCATGGGGTAGCATTG  400

seq1  TCTAAACTCCGTCTCTGCACTCAGGCAATTCTGTTATTTATAAACTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTCCGTCTCTGCACTCAGGCAATTCTGTTATTTATAAACTCCCT  450

seq1  CAAGGTCCACATTCATGTCTGCACTCTCTACTTTTAGGAAAACCCCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCACATTCATGTCTGCACTCTCTACTTTTAGGAAAACCCCAATG  500

seq1  ACTGAGGTTATACAAAGCCAGTGTTCCTGCATACAGTGCCTAGTCTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTATACAAAGCCAGTGTTCCTGCATACAGTGCCTAGTCTAGAC  550

seq1  GATGCTGACCTGTCTTTTCTCACGTGTGTGACAACCCCACCTATACCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGACCTGTCTTTTCTCACGTGTGTGACAACCCCACCTATACCGCT  600

seq1  CATTCTCTTAACGTATTTATTCATGGAGTGATTTTCTCTGCCTGGTTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTTAACGTATTTATTCATGGAGTGATTTTCTCTGCCTGGTTCGT  650

seq1  AGCATTGTCGAAAAGATTAAATAGGTAATCCAGAAAAGAAATAGTACTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGTCGAAAAGATTAAATAGGTAATCCAGAAAAGAAATAGTACTAC  700

seq1  CATATAGCAATTGACAAACTGGGGATCAAGTTTGTCAAGAGACACCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAGCAATTGACAAACTGGGGATCAAGTTTGTCAAGAGACACCAAGA  750

seq1  GTGGTATTTCTCCTACATCTGAGGATGCTCTCTTCTGTGTGCTGTTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATTTCTCCTACATCTGAGGATGCTCTCTTCTGTGTGCTGTTACAG  800

seq1  AA----ATATATATATATATATATATATATATATATATATATATATATAT  846
      ||    ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATATATATATATATATATATATATATATATATATATATATATAT  850

seq1  ATATTAATTATATACGCATCGTGCTACTGAAACAGAGTGAGGAC-AGCCA  895
      |||||||||||| ||||||||||||| |||||||||| |||||| |||||
seq2  ATATTAATTATA-ACGCATCGTGCTAATGAAACAGAGAGAGGACAAGCCA  899

seq1  TGAAATCCAGTCACCGCCCAAGCTCTTTACATTTAGCTACTCAGCACCC-  944
      ||||||| ||||||  ||||||||||||||||||||||||||||||||| 
seq2  TGAAATCTAGTCACGTCCCAAGCTCTTTACATTTAGCTACTCAGCACCCT  949

seq1  TTCGTACATGGGTTATGGTATTCCCATCTTTATGGATGAAGAAGTTGAGG  994
      |||||||||||||||||| | | |||||||| |||||||||||||||| |
seq2  TTCGTACATGGGTTATGGGAATTCCATCTTTTTGGATGAAGAAGTTGACG  999

seq1  CCCAAAGAGTTTTGAATGGCCTATCCCAAGAAA  1027
      |||||  ||||| ||  |||||||||| |||||
seq2  CCCAAGAAGTTTGGATGGGCCTATCCC-AGAAA  1031

seq1: chr14_50889462_50889914
seq2: B6Ng01-078E15.g_177_666

seq1  GGCTTTTTGTTTGTTTGTTTAGGATT----------------CTTGTTAT  34
      ||||||||||||||||||||  | ||                | |||| |
seq2  GGCTTTTTGTTTGTTTGTTTTTGTTTTGCATACCCAGAATGGCATGTTCT  50

seq1  TTTGTCCTCCCCTCTTCTTCTA--TATTTACCTAATTCCTCTCTCCATAA  82
          | ||||||   |||||||  ||| |||    |  || ||| | |  
seq2  ACCTTGCTCCCCCTGTCTTCTATCTATGTACTGTCTGTCTGTCTGCCTGT  100

seq1  AGAGC-CTCCTTTTTTAGTTTACCCAAACAGATCACT---TATATGCCAT  128
        | |  ||  | ||  || ||     | | ||  ||   | | | ||  
seq2  CTATCTGTCTGTCTTCTGTCTA---TGATATATGTCTGAATCTGTACCTG  147

seq1  TATTACCCTCTCTATC-TATCCCAAATTCCCTTATTCTGGTAATGGTCCT  177
      | | |  ||||||  | | || |    ||||    | |||   ||  |||
seq2  TTTAATTCTCTCTTGCTTGTCTC----TCCC----TGTGGCTGTGACCCT  189

seq1  ATTTTA---CTTTTCT--------------GAAG---------TCTTTAG  201
      | |  |   |||| ||              ||||         | ||| |
seq2  AATGAAAAGCTTTGCTATTTGTTGAACAGAGAAGAAATCATCATGTTTGG  239

seq1  TTACTTCTGGCTATGTAGTTACATCTGAAGATTTGGTGTGAGGAACCCTC  251
        |   | ||  ||||  |||||   ||| || |    | | |||  || 
seq2  AAAGAACAGGGGATGT-TTTACA---GAA-ATCT----TTAAGAAAGCTT  280

seq1  CAATGAGACTGAACATGTGACATTTATTCCCAAGGTCTGGGTTACCTCAC  301
       |   ||  ||||         |||| |  |    |||  ||  ||||| 
seq2  TATAAAGGATGAA--------TTTTACTGAC----TCTAAGTGGCCTCAT  318

seq1  TCAATATGATTTT-----------TTTTTTCTAGTTCTGTTC-ATTTACC  339
      | | |  |||  |           | || || ||   ||| | |   | |
seq2  TGATTCAGATCATAAACAAATGAGTATTATCAAGCAATGTACTAGCAAGC  368

seq1  TAAAATTTCATGAT---TTCATTTTTTAT--------TTTCTATGAACAG  378
       | | ||  ||| |   | || | || ||        ||||| |      
seq2  AATATTTATATGCTGCATGCAATATTCATGGTGGGTATTTCTTT----TT  414

seq1  TTTTCTTTTAT-TTTTTCTCTTTTTTAATTAGATATTTTCTTTATTTACA  427
      ||||||||| | || || | |||||| |||||||||||||||||||||||
seq2  TTTTCTTTTTTCTTATTTTATTTTTTTATTAGATATTTTCTTTATTTACA  464

seq1  TTTAAAATGTTATCCCCTTTCCTAGT  453
      ||| ||||||||||| ||||||||||
seq2  TTTTAAATGTTATCCTCTTTCCTAGT  490