BAC Information

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BAC

Clone NameB6Ng01-078M08
Chromosome1 (Build37)
Map Location 181,344,944 - 181,345,631
singlet/doubletsinglet
Overlap geneSmyd3
Upstream geneEfcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M08.bB6Ng01-078M08.g
ACCDH894377DH894378
length1,1031,218
definitionDH894377|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M08, 5' end.DH894378|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccaatatgcaatgtaatctgttatacctggctgtaatgaagat
tctaagtatactttgctaagtttgccctgagacctctaactcttatccag
taaaatactgtaagaaagcatgccaggccctccacaatattacagggaca
aatctgggacattctagctatgagaacgtcaaggttccaggaggctaagt
ttccttgaaactatgcctcaggactgcttccaggtttctaaacctgtaat
gtgagtcactactggagtggatgtagcaatgattaaggcatatcaaattt
aaaggctgcgtgtgtgtgtgtgtgtgctccatttggaacccagaacacta
gagagggtagtgaggaacatggcagagctgggatttatttaattatttag
tattttaaaagatgttgggatttagatttggatattggtaggaatatgga
agagtttaccctgtctcataaccccccccccccaaaaaaaaaaagaaact
acaaaaaacaaaaaaaaaaaaagtctcgtgtttacaaaatgatttttctc
aaacctgctgcttggactcggctaaattctcatgaagatgatcccaccca
tgagtctactaaccaactccgtgtgcgaagacactaagaaacactggcac
tatcctccctcaccttagttgggccctttaatggcacactggacttccat
gtccaccagtttctaaaggatggccaactttcctatattctccctccact
gccatcaagaacacaattaagttgttcacaacactggctgggatgtttct
gtctcaaagatcaaaattacaatgctattaacatttcaaaggggccctga
aagatcaaggaaaaacaagtgttgcattaagagccaaaaaagcagagact
tgggtttcagatgagaaggagtcaaatctgcataaattcatggtgtcaaa
ttattccagactcgaaaatactcgaactgcacgctccgtcctgaccgatt
gtactgttacaaactaattactgaggagttccatgaggacagtacaaaat
gcagaggttgcctggaaactgtgtttattggtggggtgcggtggcatgac
tga
gaattccttacaaccccatgggacaaggaatagttgaacgtgctcatcgc
accttaaagaattggctctttaagacaaaagaggggcagctatatccccc
aaggtcaccaaaggcccaccttgccttcaccttatttgtcctaaatttct
tgcacaccgatatcaagggccagtctgcagcggatcgccactggcatcca
gttacttctaattcttatgcattggtaaaatggaaggaccccctgactaa
tgaatggaagggtccagatccagttctaatttggggtaggggctcagttt
gtgttttttcacgagatgaagatggagcgcggtggctgccagagaggtta
atttgtcagatgaacacagattctgactcttctggtaagtatcattctaa
agactaaaattccttttgtgcttaaaattcagctgagagcaacagctctc
aaagctgttctccagctactctctgagccagctcccgacaggaggccgga
gactagcctcagctttacaatttgcatttgaataaagtacctagacttcc
ctgaaagaagttctgctttcctactttctcactgtctttcaagattttgt
ctttcaagcaggtaaatcaacattctcgaggcggaccagcggatgtgcat
ccccacccccctagagcacacaggtggcagctgttatccccagtctcagg
acatttccagcacgtggttttcagtctgagttaaaaatttaggtttacct
agagggctagaagagtagatatttctatattaataaagattggtttttat
tttgatagacaggcttagccccttagctgacctctggcttttcacccttg
ctgttactgcaggtgtccttagctcaataggctgtggaaaaacagggatg
aggaggaaagacttccagctcctatttagccacaatcgtggtgttactaa
cgacatattcttgctaggcttgctaatctgaagtgatatctcttaggagc
tgcaagcctcgaactgtgctactggtttgtgatttacaattagtatggca
tcactgtggcgagactgcaggaaggtcggcttggccattctgattctgcg
aataaccgctcagaaggtgtacaattgttaaaaaaaatattcggctcctc
gctcccgagtttggagacccatggtgaggtttccgatcatcaggagaatc
ggtcctgtgtactctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181344944_181345631
seq2: B6Ng01-078M08.b_502_1147

seq1  ACCCTGTCTCGAAACCCCCCCCCCCCAAAAAAAAAAAAAAAAAACAAAAA  50
      ||||||||||  ||||||||||||||||||||||||| |||  |||||||
seq2  ACCCTGTCTCATAACCCCCCCCCCCCAAAAAAAAAAAGAAACTACAAAAA  50

seq1  ACAAAAAAAAAAAAAATACGGTTTTTAAAACAGTATTTTTCTCAGACCTG  100
      ||||||||||||||| |   || |||| || |  |||||||||| |||||
seq2  ACAAAAAAAAAAAAAGTCTCGTGTTTACAAAATGATTTTTCTCAAACCTG  100

seq1  CTGCTTGGACTCAGCATAAATCTTATAAATATAAGCCCACCCATGAGTCT  150
      |||||||||||| ||  || ||| || || || | |||||||||||||||
seq2  CTGCTTGGACTCGGCTAAATTCTCATGAAGATGATCCCACCCATGAGTCT  150

seq1  ACTAAGCAACTCCGTGTGCAAAGACACTAAGAAACACTGGCACTATCCTC  200
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACTAACCAACTCCGTGTGCGAAGACACTAAGAAACACTGGCACTATCCTC  200

seq1  CCTCACCTTAGTTGGGCCCTTTAATGGCACACTGGACTTCCATGTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTTAGTTGGGCCCTTTAATGGCACACTGGACTTCCATGTCCACC  250

seq1  AGTTTCTCAAAGGATGGCCAACTTTCCTATATTCTCCCTCCACTGCCAAC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||| | 
seq2  AGTTTCT-AAAGGATGGCCAACTTTCCTATATTCTCCCTCCACTGCC-AT  298

seq1  CAAGAACACAATTAAGTTTGTTCACAACACTGGCTGGGATGTTTTCTGTT  350
      |||||||||||||||| |||||||||||||||||||||||| |||||| |
seq2  CAAGAACACAATTAAG-TTGTTCACAACACTGGCTGGGATG-TTTCTG-T  345

seq1  CTCAAAGATCAAAATTAACAATGCTATACAACAAGTACAAAGGGGCCATG  400
      |||||||||||||||| ||||||||||  ||| | | |||||||||| ||
seq2  CTCAAAGATCAAAATT-ACAATGCTAT-TAAC-ATTTCAAAGGGGCCCTG  392

seq1  GAAGATCAAGGAAAAACAAGTGTTGCATTAAGAGCCAAAAACAGCAGAAG  450
       |||||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  AAAGATCAAGGAAAAACAAGTGTTGCATTAAGAGCCAAAAA-AGCAG-AG  440

seq1  ACTTGGGTTTCAGATGAGAAAAGGAAGTCAAAATCTGCAGTAGAATTCCA  500
      ||||||||||||||||||||   | |||| ||||||||| || |||||  
seq2  ACTTGGGTTTCAGATGAGAA---GGAGTC-AAATCTGCA-TA-AATTCAT  484

seq1  TGTGTCAGAGTATTCCAGACTCGAAAAATAACTTCAGAAACTGCACGTCT  550
       |||||| | |||||||||||||||||     | |   ||||||||| ||
seq2  GGTGTCAAATTATTCCAGACTCGAAAA-----TACTCGAACTGCACG-CT  528

seq1  CCGTGCCTTGTACAGTATTTGTAACTGTTACAAACTAATTACATGAGGAG  600
      |||| |||   || |   |||| ||||||||||||||||||| |||||||
seq2  CCGT-CCT--GACCG--ATTGT-ACTGTTACAAACTAATTAC-TGAGGAG  571

seq1  TTCCCAATGAGGACAGTACCAATATTGCAGGAAGGTTGCCCTGGAAACTG  650
      ||||  |||||||||||||  | | |||||  |||||| |||||||||||
seq2  TTCC--ATGAGGACAGTAC--AAAATGCAG--AGGTTG-CCTGGAAACTG  614

seq1  TTGTTTTTATTTGGTGTGATGCTGTAGTGCATGACTGA  688
       |||||    |||||| | ||| ||   ||||||||||
seq2  -TGTTT---ATTGGTGGGGTGCGGT--GGCATGACTGA  646