BAC Information

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BAC

Clone NameB6Ng01-078N16
Chromosome12 (Build37)1 (Build37)
Map Location 32,631,616 - 32,631,673106,217,098 - 106,218,348
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078N16.bB6Ng01-078N16.g
ACCDH894441DH894442
length5111,224
definitionDH894441|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N16, 5' end.DH894442|Mus musculus domesticus DNA, BAC clone: B6Ng01-078N16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,673)(106,217,098 - 106,218,348)
sequence
tcaactgaggaatatcaaatggctgagaatcaccaaagtaaatgtgcaac
atccttatttttcaaggaaatgtaaatcaaagtgaccttgagattccacc
tcacacctcacaccactcagaatggtgaattcaatggtgtcagcgtttgg
aggctgattatgggatggatcgccccggatatggcagtctagatgatcca
tcctttcgtctcagctccaaactttgtctcagtaactccttccatgggtg
ttttgttctcaattctaagaagtggcaaagtgtccacactttggtcttcg
ttcttcttgagttttatgtaattttcaaattgtatcttgtaccttgggta
ttctaggattctgggctaatatccacttatcagtgagtacatatcatgtg
agttcttatcagaagatggcctagtcggccatcaggggaaagagaggccc
attattcttgtaaactttatatgcctcagtacaggggaatgccagggcca
agaagtgggag
gaattcagaattaccagcaaaatacaaaaatgtgtgtgtttgtctgtata
gttagaaaatacacacacacacagacacacacacacactgtatatatata
tatatatatatatatatatatatatatatatatattaaaagtggcaacag
aatttgtaggttacaatgtgaccaggtctttcatttttagaagtcatttc
catcagtgatgtacaggtgaatctcaagtgaatggacctacagccagagg
agatgatggccctcacattggtggaagtaaaattaactacaccatgagtc
ctggttttaactttccttacataacagtttacaatggtgcattgcattca
cacactagtcatattagctcagccttagaatactaaaagcctccattctc
tttcctgttatgcttctgtgatctcactttagacttttcttcaccagagt
gctcttatagtaattctgaatcaggtaatccacatgtaaaataaaacatc
caaatctgaaatgcatgctgatttcttctctaaaacagtaaagtgaaaat
tcaaatgtcctgtcagttatctgctaatgagcactgaaggcacagctctg
agttcagtaaacttcatttagatgtgtcagcaagagccagtgctatatta
aaggtctgaaacaggaacaataattaagacggctcaatgccacttccttt
tcatctttaactgctgcctacagtccgtacacaacaaatacgaaaaggtc
atcagaatttcatttttataatgagtgcatatttatattccccaaatctt
ttcatctaacaaaggtagtgataatgggctgaaaaaaatttgatgcagtc
atggagtttggaaaaggcacggggaaaaaaacccattgcaatggaatgca
cagcacagctctctctccctaatctgtctggactcactcatatgaggcac
agtctgtgcacatcctagaggttagaaatctgggcacttttatgctcttt
tctgacacttttaagttgtattccttgaacattgtcagttcctcaagtct
tagatttcttatttataaaattagagcagtacaaagtatccatagccctg
agatgtatcttctcgatctaatttgactggaataaaatctagaggacatg
tcttatgtacagctggctaaagggtatagtatcctgtgtgacttcaaatt
cagcgtatgttactccatagtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631673
seq2: B6Ng01-078N16.b_459_563 (reverse)

seq1  CTCCCACTTCTTGGCCCTGG------------------------------  20
      ||||||||||||||||||||                              
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  -CAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
       |||||   |||||||||||||||| ||||                ||||
seq2  ACAAGAATAATGGGCCTCTCTTTCCCCTGATGGCCGACTAGGCCATCTTC  100

seq1  TGATA  58
      |||||
seq2  TGATA  105

seq1: chr1_106217098_106218348
seq2: B6Ng01-078N16.g_68_1291 (reverse)

seq1  CCTACTATGGAGTGATACCATTTCATGCTTGAAATTTTGAGAAATGTCAA  50
      ||||||||||||   || |||   | || ||||  ||||    | ||| |
seq2  CCTACTATGGAG---TAACAT---ACGC-TGAA--TTTG----AAGTC-A  36

seq1  CAACAAGAATAACATATTAACCTTTATGCAGGCTGTACCTTTAGAACAC-  99
      ||   || |||  |   || |||||| ||  |||||||    | || || 
seq2  CA--CAGGATACTA---TACCCTTTA-GCCAGCTGTAC----ATAAGACA  76

seq1  TGT-CTCATGATTTTAATCCAGTCAATATAGGACTCCGAGAAGATACATC  148
      ||| |||  ||||||| |||||||||  |||     ||||||||||||||
seq2  TGTCCTCTAGATTTTATTCCAGTCAAATTAG---ATCGAGAAGATACATC  123

seq1  TCA-GGCTATGGATGACTTTGTACCTGCTCTAGTTTTATAAATGAGAAAT  197
      ||| |||||||||| |||||||| |||||||| |||||||||| ||||||
seq2  TCAGGGCTATGGAT-ACTTTGTA-CTGCTCTAATTTTATAAATAAGAAAT  171

seq1  CTAAGACTTGAGGGACTGACAATGTTTCAAGG-ATACAACTTAAAAGTGT  246
      ||||||||||||| |||||||||| ||||||| |||||||||||||||||
seq2  CTAAGACTTGAGGAACTGACAATG-TTCAAGGAATACAACTTAAAAGTGT  220

seq1  CAGAAAAGAGGCATAAACAGTGCCCAGATTTCTAAACCTCTAGGATGTGC  296
      ||||||||| ||||||| ||||||||||||||| ||||||||||||||||
seq2  CAGAAAAGA-GCATAAA-AGTGCCCAGATTTCT-AACCTCTAGGATGTGC  267

seq1  ACAGACTGTGCCTCATATGAGTTGAGTCCAGACAGATTAGGGAGAGAGAG  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAGACTGTGCCTCATATGAG-TGAGTCCAGACAGATTAGGGAGAGAGAG  316

seq1  CTGTGCTGTGCATTCCATTGCATTGGGTTTTTTTCCCCGTGCCTTTTCCA  396
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTGTGCTGTGCATTCCATTGCAATGGGTTTTTTTCCCCGTGCCTTTTCCA  366

seq1  AACTCCATGACTGCATCAAATTTTTTTCAGCCCATTATCACTACCTTTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATGACTGCATCAAATTTTTTTCAGCCCATTATCACTACCTTTGT  416

seq1  TAGATG-AAAGATTTGGGGAATATAAATATGCACTCATTAT-AAAATG-A  493
      |||||| |||||||||||||||||||||||||||||||||| |||||| |
seq2  TAGATGAAAAGATTTGGGGAATATAAATATGCACTCATTATAAAAATGAA  466

seq1  ATTCTGATGACCTTTTCGTATTTGTTGTGTACGGACTGTAGGCAGCAGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATGACCTTTTCGTATTTGTTGTGTACGGACTGTAGGCAGCAGTT  516

seq1  AAAGATGAAAAGGAAGTGGCATTGAGCCGTCTTAATTATTGTTCCTGTTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGAAAAGGAAGTGGCATTGAGCCGTCTTAATTATTGTTCCTGTTT  566

seq1  CAGACCTTTAATATAGCACTGGCTCTTGCTGACACATCTAAATGAAGTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTTAATATAGCACTGGCTCTTGCTGACACATCTAAATGAAGTTT  616

seq1  ACTGAACTCAGAGCTGTGCCTTCAGTGCTCATTAGCAGATAACTGACAGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACTCAGAGCTGTGCCTTCAGTGCTCATTAGCAGATAACTGACAGG  666

seq1  ACATTTGAATTTTCACTTTACTGTTTTAGAGAAGAAATCAGCATGCATTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAATTTTCACTTTACTGTTTTAGAGAAGAAATCAGCATGCATTT  716

seq1  CAGATTTGGATGTTTTATTTTACATGTGGATTACCTGATTCAGAATTACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGGATGTTTTATTTTACATGTGGATTACCTGATTCAGAATTACT  766

seq1  ATAAGAGCACTCTGGTGAAGAAAAGTCTAAAGTGAGATCACAGAAGCATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGCACTCTGGTGAAGAAAAGTCTAAAGTGAGATCACAGAAGCATA  816

seq1  ACAGGAAAGAGAATGGAGGCTTTTAGTATTCTAAGGCTGAGCTAATATGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGAGAATGGAGGCTTTTAGTATTCTAAGGCTGAGCTAATATGA  866

seq1  CTAGTGTGTGAATGCAATGCACCATTGTAAACTGTTATGTAAGGAAAGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTGTGAATGCAATGCACCATTGTAAACTGTTATGTAAGGAAAGTT  916

seq1  AAAACCAGGACTCATGGTGTAGTTAATTTTACTTCCACCAATGTGAGGGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGGACTCATGGTGTAGTTAATTTTACTTCCACCAATGTGAGGGC  966

seq1  CATCATCTCCTCTGGCTGTAGGTCCATTCACTTGAGATTCACCTGTACAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTCCTCTGGCTGTAGGTCCATTCACTTGAGATTCACCTGTACAT  1016

seq1  CACTGATGGAAATGACTTCTAAAAATGAAAGACCTGGTCACATTGTAACC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATGGAAATGACTTCTAAAAATGAAAGACCTGGTCACATTGTAACC  1066

seq1  TACAAATTCTGTTGCCACTTTTAATATATATATATATATATATATATATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCTGTTGCCACTTTTAATATATATATATATATATATATATATA  1116

seq1  TATATATATATATATATACAGTGTGTGTGTGTGTCTGTGTGTGTGTGTAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATACAGTGTGTGTGTGTGTCTGTGTGTGTGTGTAT  1166

seq1  TTTCTAACTATACAGACAAACACACACATTTTTGTATTTTGCTGGTAATT  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTATACAGACAAACACACACATTTTTGTATTTTGCTGGTAATT  1216

seq1  CTGAATTC  1251
      ||||||||
seq2  CTGAATTC  1224