BAC Information

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BAC

Clone NameB6Ng01-078O08
Chromosome1 (Build37)
Map Location 181,344,487 - 181,512,635
singlet/doubletdoublet
Overlap geneSmyd3, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik
Upstream geneEfcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneSccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078O08.bB6Ng01-078O08.g
ACCDH894472DH894473
length1,1051,103
definitionDH894472|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O08, 5' end.DH894473|Mus musculus domesticus DNA, BAC clone: B6Ng01-078O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,344,487 - 181,345,631)(181,511,522 - 181,512,635)
sequence
gaattcttgtcaaaagtaacatctggtctttaacataattaatgctgctc
tatctaaataataaacagacactgggaaaaatgtcccttcgttctattct
tgcgtcattccgtgaaaatagcgagcagcctgctgatcctcccactggat
ttagaggatcatagaagttcattgcctttagtctgcccaaaagcaggatc
aaaccattagtcgtaaacatagaccgtgagtaaacatagaacgtgatcgc
accacttggaaatgtttcacgttagacggaagtctcagtctactccactt
cttctaaccacgatgataaaaatacggtttttagccgggcgtggtggcgc
acgcctttaatcccagcactcgggaggcagaggcaggcggatttctgagt
tcgaggccagcctggtctgaaaagtgagctccaggacagccagggctaca
cagagaaaccctgtctcgaaaccccccccccccaaaaaaaaaaaaaaaaa
acaaaaaacaaaaaaaaaaaaaatacggtttttaaaacagtatttttctc
agacctgctgcttggactcagcataaatcttataaatataagcccaccca
tgagtctactaagcaactccgtgtgcaaagacactaagaaacactggcac
tatcctccctcaccttagttgggccctttaatggcacactggacttccat
gtccaccagtttctcaaaggatggccaactttcctatattctccctccac
tgccaaccaagaacacaattaagtttgttcacaacactggctgggatgtt
ttctgttctcaaagatcaaaattaacaatgctatacaacaagtacaaagg
ggccatggaagatcaaggaaaaacaagtgttgcattagagccaaaaacag
cagagacttgggtttcagatgagaaagaagtcaaatctgcagtagatcca
tgtgtcagagtattcagactcgaaaaataactcagaaactgcacgtctcg
tgctgtacagttttgtactgtacactatacatgaggagttccatgagacg
tacatatgcagagtgctggacctgttgtttatggtgatgctgtatgcatg
actga
gaattctctaagacctgtcacccagaagaacactctggcacagcaagcac
atgaactcataaacacttgatttttggctactttatgcacaggactgttg
tcctcaggacaatgctcaggatatgcagtgtcagcttccttgtgataagc
agagacacggaaggaactgagttcctgatctcagatcataaaggtagcag
cagcaggcagagcatagcttcaaacccagagctctccctgctaaccgctg
actccaggctgaatatccatttccaggttttgtcttcctccagttcccag
ccttcctggtcttagaccagctggataccttaaaccatggtggaagtgaa
agcagatagggtgctgaacaggggcagcgtcagtttagaagagtcgagtc
tcccacatgctctctacctctggttccggttatctcctgcactgttttgt
ctactgcttagatgccatggtgactagcaccgagcaaacaccaaatgttg
ttatggcaatttttatagacacttcatctgaacttgtctgttaagtcata
caaaatttatgagccattgattgccaggggctgagggcaggaggactggg
gagtgactgctaatgggttcatagtttttttgttttttgtttttttgttc
ttttacagaggacccaattctgcacagctccgtggctgtaataaaaccac
tgtgccgtagactttaaaaggcaaacttggtagcttgttaattatatctc
catttttaacaacttgctattataaagaaaccagacattgacgaatgttg
gcaaagggacagagaaactgtatctcatccatattccatatttgccgcgc
tggaaagcagttctccagttaaacatcatgttacctaccgtgaaagacca
tcccccttggataagtgagagaaatgaacatgtgttcacaggggtgtcac
tcacaggagccgaaagacagaataaccaacgtgctcaccgtgtacacgca
aacccggaaatgtgctgcctccatgcaagggagcatttcttggcaaagaa
agaaagagactgtaaatagaatacagccgggtgacagaatggtgtttcgt
gaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181344487_181345631
seq2: B6Ng01-078O08.b_49_1153

seq1  GAATTCTTGTCAAAAGTAACATCTGGTCTTTAACATAATTAATGCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCAAAAGTAACATCTGGTCTTTAACATAATTAATGCTGCTC  50

seq1  TATCTAAATAATAAACAGACACTGGGAAAAATGTCCCTTCGTTCTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAATAATAAACAGACACTGGGAAAAATGTCCCTTCGTTCTATTCT  100

seq1  TGCGTCATTCCGTGAAAATAGCGAGCAGCCTGCTGATCCTCCCACTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCATTCCGTGAAAATAGCGAGCAGCCTGCTGATCCTCCCACTGGAT  150

seq1  TTAGAGGATCATAGAAGTTCATTGCCTTTAGTCTGCCCAAAAGCAGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGATCATAGAAGTTCATTGCCTTTAGTCTGCCCAAAAGCAGGATC  200

seq1  AAACCATTAGTCGTAAACATAGACCGTGAGTAAACATAGAACGTGATCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTAGTCGTAAACATAGACCGTGAGTAAACATAGAACGTGATCGC  250

seq1  ACCACTTGGAAATGTTTCACGTTAGACGGAAGTCTCAGTCTACTCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGGAAATGTTTCACGTTAGACGGAAGTCTCAGTCTACTCCACTT  300

seq1  CTTCTAACCACGATGATAAAAATACGGTTTTTAGCCGGGCGTGGTGGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACCACGATGATAAAAATACGGTTTTTAGCCGGGCGTGGTGGCGC  350

seq1  ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGT  400

seq1  TCGAGGCCAGCCTGGTCTGAAAAGTGAGCTCCAGGACAGCCAGGGCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGTCTGAAAAGTGAGCTCCAGGACAGCCAGGGCTACA  450

seq1  CAGAGAAACCCTGTCTCGAAACCCCCCCCCCCCAAAAAAAAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAACCCCCCCCCCCCAAAAAAAAAAAAAAAAA  500

seq1  ACAAAAAACAAAAAAAAAAAAAATACGGTTTTTAAAACAGTATTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAAAAAAAAAAAAATACGGTTTTTAAAACAGTATTTTTCTC  550

seq1  AGACCTGCTGCTTGGACTCAGCATAAATCTTATAAATATAAGCCCACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGCTGCTTGGACTCAGCATAAATCTTATAAATATAAGCCCACCCA  600

seq1  TGAGTCTACTAAGCAACTCCGTGTGCAAAGACACTAAGAAACACTGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTACTAAGCAACTCCGTGTGCAAAGACACTAAGAAACACTGGCAC  650

seq1  TATCCTCCCTCACCTTAGTTGGGCCCTTTAATGGCACACTGGACTTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCCCTCACCTTAGTTGGGCCCTTTAATGGCACACTGGACTTCCAT  700

seq1  GTCCACCAGTTTCTCAAAGGATGGCCAACTTTCCTATATTCTCCCTCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCAGTTTCTCAAAGGATGGCCAACTTTCCTATATTCTCCCTCCAC  750

seq1  TGCCAACCAAGAACACAATTAAGTTTGTTCACAACACTGGCTGGGATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCAAGAACACAATTAAGTTTGTTCACAACACTGGCTGGGATGTT  800

seq1  TTCTGTTCTCAAAGATCAAAATTAACAATGCTATACAACAAGTACAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCAAAGATCAAAATTAACAATGCTATACAACAAGTACAAAGG  850

seq1  GGCCATGGAAGATCAAGGAAAAACAAGTGTTGCATTAAGAGCCAAAAACA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCCATGGAAGATCAAGGAAAAACAAGTGTTGCATT-AGAGCCAAAAACA  899

seq1  GCAGAAGACTTGGGTTTCAGATGAGAAAAGGAAGTCAAAATCTGCAGTAG  950
      |||| |||||||||||||||||||||||  |||||| |||||||||||||
seq2  GCAG-AGACTTGGGTTTCAGATGAGAAA--GAAGTC-AAATCTGCAGTAG  945

seq1  AATTCCATGTGTCAGAGTATTCCAGACTCGAAAAATAACTTCAGAAACTG  1000
      |  |||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  A--TCCATGTGTCAGAGTATT-CAGACTCGAAAAATAAC-TCAGAAACTG  991

seq1  CACGTCTCCGTGCCTTGTACAGTATTTGTAACTGTTACAAACTAATTACA  1050
      ||||||| |||||  |||||||| ||||| |||||   | ||||  ||||
seq2  CACGTCT-CGTGC--TGTACAGT-TTTGT-ACTGT---ACACTA--TACA  1031

seq1  TGAGGAGTTCCCAATGAGGACAGTACCAATATTGCAGGAAGGTTGCCCTG  1100
      |||||||||||  |||| ||| ||||  ||| |||||  ||  ||  |||
seq2  TGAGGAGTTCC--ATGA-GAC-GTAC--ATA-TGCAG--AG--TG--CTG  1068

seq1  GAAACTGTTGTTTTTATTTGGTGTGATGCTGTAGTGCATGACTGA  1145
      | | ||||||||| |       ||||||||||| |||||||||||
seq2  G-ACCTGTTGTTTAT------GGTGATGCTGTA-TGCATGACTGA  1105

seq1: chr1_181511522_181512635
seq2: B6Ng01-078O08.g_70_1172 (reverse)

seq1  TTCACGAAACACATTTTCCTGGTTCACTCCGGCTGTAATCTATTTACAGT  50
      ||||||||||||  ||  |||  |||| ||||||||| ||||||||||||
seq2  TTCACGAAACACCATT--CTG--TCAC-CCGGCTGTATTCTATTTACAGT  45

seq1  CTCTTTCTTTCTATGGCCAAGAAATGCTCCCTTGCATGGAGGCAGCACAT  100
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTCT-TTGCCAAGAAATGCTCCCTTGCATGGAGGCAGCACAT  94

seq1  TTCCCGGGTTCTTGCGTGTACACGGTTGAGCACGTTGGTTATTCTGTCTT  150
      || ||||||  |||||||||||||| ||||||||||||||||||||||||
seq2  TT-CCGGGT--TTGCGTGTACACGG-TGAGCACGTTGGTTATTCTGTCTT  140

seq1  TCGGCTCCTGTGAGTGACACCCCTGTGAACACATGTTCATTTCTCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTCCTGTGAGTGACACCCCTGTGAACACATGTTCATTTCTCTCACT  190

seq1  TATCCAAGGGGGATGGTCTTTCACGGTAGGTAACATGATGTTTAACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGGGGGATGGTCTTTCACGGTAGGTAACATGATGTTTAACTGGA  240

seq1  GAACTGCTTTCCAGCGCGGCAAATATGGAAATATGGATGAGATACAGTTT  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAACTGCTTTCCAGCGCGGCAAATATGG-AATATGGATGAGATACAGTTT  289

seq1  CTCTGTCCCTTTGCCAACATTCGTCAATGTCTGGTTTCTTTATAATAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCTTTGCCAACATTCGTCAATGTCTGGTTTCTTTATAATAGCA  339

seq1  AGTTGTTAAAAATGGAGATATAATTAACAAGCTACCAAGTTTGCCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTAAAAATGGAGATATAATTAACAAGCTACCAAGTTTGCCTTTTA  389

seq1  AAGTCTACGGCACAGTGGTTTTATTACAGCCACGGAGCTGTGCAGAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTACGGCACAGTGGTTTTATTACAGCCACGGAGCTGTGCAGAATTG  439

seq1  GGTCCTCTGTAAAAGAACAAAAAAACAAAAAACAAAAAAACTATGAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTGTAAAAGAACAAAAAAACAAAAAACAAAAAAACTATGAACCC  489

seq1  ATTAGCAGTCACTCCCCAGTCCTCCTGCCCTCAGCCCCTGGCAATCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGTCACTCCCCAGTCCTCCTGCCCTCAGCCCCTGGCAATCAATG  539

seq1  GCTCATAAATTTTGTATGACTTAACAGACAAGTTCAGATGAAGTGTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAATTTTGTATGACTTAACAGACAAGTTCAGATGAAGTGTCTAT  589

seq1  AAAAATTGCCATAACAACATTTGGTGTTTGCTCGGTGCTAGTCACCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGCCATAACAACATTTGGTGTTTGCTCGGTGCTAGTCACCATGG  639

seq1  CATCTAAGCAGTAGACAAAACAGTGCAGGAGATAACCGGAACCAGAGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAGCAGTAGACAAAACAGTGCAGGAGATAACCGGAACCAGAGGTA  689

seq1  GAGAGCATGTGGGAGACTCGACTCTTCTAAACTGACGCTGCCCCTGTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATGTGGGAGACTCGACTCTTCTAAACTGACGCTGCCCCTGTTCA  739

seq1  GCACCCTATCTGCTTTCACTTCCACCATGGTTTAAGGTATCCAGCTGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTATCTGCTTTCACTTCCACCATGGTTTAAGGTATCCAGCTGGTC  789

seq1  TAAGACCAGGAAGGCTGGGAACTGGAGGAAGACAAAACCTGGAAATGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCAGGAAGGCTGGGAACTGGAGGAAGACAAAACCTGGAAATGGAT  839

seq1  ATTCAGCCTGGAGTCAGCGGTTAGCAGGGAGAGCTCTGGGTTTGAAGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCCTGGAGTCAGCGGTTAGCAGGGAGAGCTCTGGGTTTGAAGCTA  889

seq1  TGCTCTGCCTGCTGCTGCTACCTTTATGATCTGAGATCAGGAACTCAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCCTGCTGCTGCTACCTTTATGATCTGAGATCAGGAACTCAGTT  939

seq1  CCTTCCGTGTCTCTGCTTATCACAAGGAAGCTGACACTGCATATCCTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGTGTCTCTGCTTATCACAAGGAAGCTGACACTGCATATCCTGAG  989

seq1  CATTGTCCTGAGGACAACAGTCCTGTGCATAAAGTAGCCAAAAATCAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCTGAGGACAACAGTCCTGTGCATAAAGTAGCCAAAAATCAAGT  1039

seq1  GTTTATGAGTTCATGTGCTTGCTGTGCCAGAGTGTTCTTCTGGGTGACAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAGTTCATGTGCTTGCTGTGCCAGAGTGTTCTTCTGGGTGACAG  1089

seq1  GTCTTAGAGAATTC  1114
      ||||||||||||||
seq2  GTCTTAGAGAATTC  1103