BAC Information

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BAC

Clone NameB6Ng01-079D03
Chromosome1 (Build37)
Map Location 70,437,217 - 70,600,591
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneIkzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079D03.bB6Ng01-079D03.g
ACCDH894679DH894680
length5311,146
definitionDH894679|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D03, 5' end.DH894680|Mus musculus domesticus DNA, BAC clone: B6Ng01-079D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,437,217 - 70,437,744)(70,599,428 - 70,600,591)
sequence
gaattcattagagcaccacgtgctaattatacattttatatatcattgat
gaaactagaaattaaatgtagtatttttgacaaggggttctagcatccta
ctataactgtgtccagtgtagaagaagacattatcacttgttatataagt
ctagagcaatctgattggatgggtacacatcgagtttgttttccctgaac
catttctttggaaatccagtgtcaatctgaatctagtttctgcaatgctc
acactaaatttaccatattataaattatatatacacatagagtttttaat
ttaataaaaattcaaaaattatttaaaatagaaaatccaatatctttgaa
ccccgttaaataagaagttttaaaatcctatggtaaattaataacattaa
aaagattatctttaaatatattttgatattgtaaaaaatacacgggatag
tatgcagccaaatacacacccccccacaagcccaacccccaaatgaattt
ggcgattcttaccgagagaggtgggccatga
gaattcactgcacccacccaacaaacacttggagttcattgattccctgg
cactgacttagtgttagagaaagaagctaagccttggttccacagagaga
gcaatctcgtttgggtagattgtaatgtactagggctggggatgtgaccc
agtggtaacgtaactgcctaaaatgcaagagacaccctggacttgatttt
tagcaacacacacacacacacacacacacacacacacacacccacacaca
cacaccacatagaaatgcaatttacaaagtgttacaggaacacagaagga
ctagacaaatgtggccccagtgagaatgtggagaatcttattgactaaat
attaacaagcttagattaaattagctaaacattgtctccagtgcagacaa
ttccctcatcatctttgatacacacctggaatctggagatgtaagtttgt
aggtggttgtgagcaggcttagaagaaaggctgatttcctaggtaaagtt
cttagcaacttacatttaagactgtccatattgaggatccaggctctcta
aatttttggaagccttctcacaagatattctgctatatcttgtaatttat
taaatttaatatagtgtttttcatctatatggataaaatgatcttataaa
ctaaattatcaaaaatatcatataagttgaaacataattatggcataatt
ttgaaggtaagctagccagtaggttttgctgaatagtctttgtgaatgtc
caagcatatcaacaagcttccctcattacgtaacaacaactactggacca
gttggcttcatatctcagatggaaataaacatctaggagctttgctgcat
actgtgatttatttcaaataattgatttccatgcatcaagttcatgagag
ttactgaaagcaatacatagagcaagaacagaagaacatttcctaagatt
tggagaactacaaagaataagtataccatggaattcatggtctttataga
cctttccctgaaatctaatgagcagagacccagagagccattaataagtg
atcccttttcttctactggtagtgtcagaaagtatgaaatgataaattga
ctagcattctataatccgggaaatgtctccgtatctgaaggcagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_70437217_70437744
seq2: B6Ng01-079D03.b_42_572

seq1  GAATTCATTAGAGCACCACGTGCTAATTATACATTTTATATATCATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGAGCACCACGTGCTAATTATACATTTTATATATCATTGAT  50

seq1  GAAACTAGAAATTAAATGTAGTATTTTTGACAAGGGGTTCTAGCATCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGAAATTAAATGTAGTATTTTTGACAAGGGGTTCTAGCATCCTA  100

seq1  CTATAACTGTGTCCAGTGTAGAAGAAGACATTATCACTTGTTATATAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTGTGTCCAGTGTAGAAGAAGACATTATCACTTGTTATATAAGT  150

seq1  CTAGAGCAATCTGATTGGATGGGTACACATCGAGTTTGTTTTCCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAATCTGATTGGATGGGTACACATCGAGTTTGTTTTCCCTGAAC  200

seq1  CATTTCTTTGGAAATCCAGTGTCAATCTGAATCTAG-TTCTGCAATGCTC  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATTTCTTTGGAAATCCAGTGTCAATCTGAATCTAGTTTCTGCAATGCTC  250

seq1  ACACTAAATTTACCATATTATAAATTATATATACACATAGAGTTTTAAAT  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACACTAAATTTACCATATTATAAATTATATATACACATAGAGTTTTTAAT  300

seq1  TTAATAAAA--TACAAAATTATTT-AAATAGAAAAT-CAATATCTTTGAT  345
      |||||||||  |  |||||||||| ||||||||||| |||||||||||| 
seq2  TTAATAAAAATTCAAAAATTATTTAAAATAGAAAATCCAATATCTTTGAA  350

seq1  CTCAGTT-AATAAGATG-TTTAAAATTCTAATGTAAATTAATAACA-TAA  392
      | | ||| ||||||| | |||||||| |||  |||||||||||||| |||
seq2  CCCCGTTAAATAAGAAGTTTTAAAATCCTATGGTAAATTAATAACATTAA  400

seq1  AAAGATTATCATTTAAATATATTTGTATATTGTAAAAGAATACA-GTGAT  441
      |||||||||| |||||||||||||  ||||||||||| |||||| | |||
seq2  AAAGATTATC-TTTAAATATATTTTGATATTGTAAAA-AATACACGGGAT  448

seq1  AGTATGCAAGCAAATACACACACACACACAAGCACAAACACACAAATGAT  491
      ||||||||  ||||||||||| | | ||||||| | ||| | ||||||| 
seq2  AGTATGCAGCCAAATACACACCCCCCCACAAGC-CCAACCCCCAAATGAA  497

seq1  ATTGCAGATTCTTTAACTGAGAGAGGTGGGCCCATGA  528
       |||  |||||||  || |||||||||||| ||||||
seq2  TTTGGCGATTCTT--ACCGAGAGAGGTGGG-CCATGA  531

seq1: chr1_70599428_70600591
seq2: B6Ng01-079D03.g_68_1213 (reverse)

seq1  GTCTGCC-TCAGAATACTGAAGACAATTTCCCGGTATTTATAGAATACTA  49
      ||||||| |||| |||| | |||| |||||||||   ||||||||| |||
seq2  GTCTGCCTTCAG-ATAC-GGAGAC-ATTTCCCGG--ATTATAGAATGCTA  45

seq1  GTCAAATTTTATTAATTTCATACTTTCTGACAACTACCAGTAAGAAGAAA  99
      |||||  |||| | ||||||||||||||||| ||||||||| ||||||||
seq2  GTCAA--TTTA-TCATTTCATACTTTCTGAC-ACTACCAGT-AGAAGAAA  90

seq1  AGGGGATCACTTATTAATTGGCTCTTCTGTGTCTCTGGCTCATTAGATTT  149
      | ||||||||||||||| |||||| |||| |||||| |||||||||||||
seq2  A-GGGATCACTTATTAA-TGGCTC-TCTGGGTCTCT-GCTCATTAGATTT  136

seq1  CAGGGACAGGGTCTATAAAGAACCATTGAATTCCATGGTATACTTTATTC  199
      |||||| | ||||||||||| |||| ||||||||||||||||| ||||||
seq2  CAGGGA-AAGGTCTATAAAG-ACCA-TGAATTCCATGGTATAC-TTATTC  182

seq1  TTTGTAAGTCTCCAAATCCTTAGGAAATTGTTCTTCCTGTTCTTGCTCTA  249
      ||||||  ||||||||| ||||||||| ||||||| ||||||||||||||
seq2  TTTGTAGTTCTCCAAAT-CTTAGGAAA-TGTTCTT-CTGTTCTTGCTCTA  229

seq1  TGTATTGCTTTCAGTAACTCTCATGAACTTGATTGCATGGAAATC-ATTA  298
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  TGTATTGCTTTCAGTAACTCTCATGAACTTGA-TGCATGGAAATCAATTA  278

seq1  -TTGAAATAAATCACAGTATGCAGC-AAGCTCCTAGATGTTTATTTCCAT  346
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTGAAATAAATCACAGTATGCAGCAAAGCTCCTAGATGTTTATTTCCAT  328

seq1  CTGAGATATGAAGCCAACTGGTCCAGTAGTTGTTGTTACGTAATGAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATATGAAGCCAACTGGTCCAGTAGTTGTTGTTACGTAATGAGGGA  378

seq1  AGCTTGTTGATATGCTTGGACATTCACAAAGACTATTCAGCAAAACCTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTGATATGCTTGGACATTCACAAAGACTATTCAGCAAAACCTAC  428

seq1  TGGCTAGCTTACCTTCAAAATTATGCCATAATTATGTTTCAACTTATATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCTTACCTTCAAAATTATGCCATAATTATGTTTCAACTTATATG  478

seq1  ATATTTTTGATAATTTAGTTTATAAGATCATTTTATCCATATAGATGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGATAATTTAGTTTATAAGATCATTTTATCCATATAGATGAAA  528

seq1  AACACTATATTAAATTTAATAAATTACAAGATATAGCAGAATATCTTGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATATTAAATTTAATAAATTACAAGATATAGCAGAATATCTTGTG  578

seq1  AGAAGGCTTCCAAAAATTTAGAGAGCCTGGATCCTCAATATGGACAGTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTTCCAAAAATTTAGAGAGCCTGGATCCTCAATATGGACAGTCT  628

seq1  TAAATGTAAGTTGCTAAGAACTTTACCTAGGAAATCAGCCTTTCTTCTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAAGTTGCTAAGAACTTTACCTAGGAAATCAGCCTTTCTTCTAA  678

seq1  GCCTGCTCACAACCACCTACAAACTTACATCTCCAGATTCCAGGTGTGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCACAACCACCTACAAACTTACATCTCCAGATTCCAGGTGTGTA  728

seq1  TCAAAGATGATGAGGGAATTGTCTGCACTGGAGACAATGTTTAGCTAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATGATGAGGGAATTGTCTGCACTGGAGACAATGTTTAGCTAATT  778

seq1  TAATCTAAGCTTGTTAATATTTAGTCAATAAGATTCTCCACATTCTCACT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAAGCTTGTTAATATTTAGTCAATAAGATTCTCCACATTCTCACT  828

seq1  GGGGCCACATTTGTCTAGTCCTTCTGTGTTCCTGTAACACTTTGTAAATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCACATTTGTCTAGTCCTTCTGTGTTCCTGTAACACTTTGTAAATT  878

seq1  GCATTTCTATGTGGTGTGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTATGTGGTGTGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTG  928

seq1  TGTGTGTGTGTGTTGCTAAAAATCAAGTCCAGGGTGTCTCTTGCATTTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTGCTAAAAATCAAGTCCAGGGTGTCTCTTGCATTTTA  978

seq1  GGCAGTTACGTTACCACTGGGTCACATCCCCAGCCCTAGTACATTACAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTTACGTTACCACTGGGTCACATCCCCAGCCCTAGTACATTACAAT  1028

seq1  CTACCCAAACGAGATTGCTCTCTCTGTGGAACCAAGGCTTAGCTTCTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAACGAGATTGCTCTCTCTGTGGAACCAAGGCTTAGCTTCTTTC  1078

seq1  TCTAACACTAAGTCAGTGCCAGGGAATCAATGAACTCCAAGTGTTTGTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACTAAGTCAGTGCCAGGGAATCAATGAACTCCAAGTGTTTGTTG  1128

seq1  GGTGGGTGCAGTGAATTC  1164
      ||||||||||||||||||
seq2  GGTGGGTGCAGTGAATTC  1146