BAC Information

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BAC

Clone NameB6Ng01-079K05
Chromosome1 (Build37)
Map Location 88,366,944 - 88,438,537
singlet/doubletdoublet
Overlap geneLOC100040414, Ptma
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik
Downstream genePde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K05.bB6Ng01-079K05.g
ACCDH894990DH894991
length1,123872
definitionDH894990|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K05, 5' end.DH894991|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,366,944 - 88,368,112)(88,437,663 - 88,438,537)
sequence
gaattccaggccagattacaggcagaccttaattcaaaacaaacaaacaa
aattgccctataagcatttacaccgtgtgtgttttgtagtagcattaaaa
aaaaagaaaaaagaaaaaaaaacccacaaagcaaaggtcagaggcattat
ttgtaacttactgtggatatttcaaaagaacaatttttggctaacactca
gagatgacagaaatagacgattgcgtcactgcctgattaaaacggaaaag
ctgaaggttttccaaaaggaaacaagaggaggcaaggagtctagactgac
cactcagaagtgtgtgtgtgtgtgagtgataccaagcatcggtgggtggg
gcctttgtgcggacaaagtccatatctggatgtggctagtggacattttt
agcagcccagcagcttgtgacctgtgactgggaggcttttcccaggggac
aagtgcacagtcagaaactacatgggggcagctgcctccctgactttgcc
tgtgcccaaacagtaagagtgcgtcatgcctgatgcattgccaggcaacg
cagtgtatctgggtgtgtcccttaaggctctctccaactcggtagcttat
gcatagcctgctttgcctgtgttcctggctggtaatgtcctcaagagata
gcgagctctctcattcactcttcccactctcctctttcctggttggttga
tactaaggatggaagccaaggcctttcgcttgttaggcaagtacactacc
acgagccacgcccccagcctgtgacaactctctcctggtcttagtgtgca
aggcttgtattctcttacactgctacatcggcaggctgtagttagaactg
gaagtttccatttagcctcggaagcgagccctcctcgaacctgaaagttg
actgtggagggctctagtcacccctgcctgcgacggactttagagaaaat
acttatcctcacagtgcctgggtgaggagtgcgcccaacctttcttcaaa
attgctagactgctaccagagagatttcttgcttcaaacatgtctgggat
tttttttcttttagaattaactgggttcctgagttggtccattgattgtg
tatttgtacacatgttaatgttt
gaattctttcaggcagcgcgtaccagtgctggacacatggctgtggagaa
agcattatcttggaaaatgcttccctggagcaggcatgatggctcaccta
gcatctgcgagatgaaggcaagaagagcagttcaaggcgggcagtggtgg
cgcacgcctttaatcccagcactagggaggcagaggcaggccgatttctg
agttcgaggccagcctggtctacaaagtgagttccaggacagccagggct
atacagagaaaccctgtctcgaaaaaccaaataaacaaaaagaagaagaa
gaagaaacacatagacaaagcctggcacagtgtgtggccattggttttca
aaaattgttaggtactcgctcgggtccccggagattctgattccagaagt
atgataccctacacacacacatgagcacctcaggctggggctatgctcag
tggtagagtccaaggcttcaatgccaaacactgcaggaaaaggaaaacac
cctggggacccgggtccagtctataggctacactgggacatgctaatgcg
gccatcaaactgctggagacatgagagtgtaataaagacagccccaggca
aacccaggtctcttagcagtgtgctaggggcagaggcagacacattttca
atcctgtgcaaactgaaggaatgaattagcttggatcactaaagagagga
gggaatcccaggccacacagccttgggcagatttgggtgagcgaaccgat
ttctttggagaaaatttggcccaggtttgccaaataccctctcatctttc
tccccatgtgttacttgccaatatcttgagccctttaaaacggggggtgg
ggggtggcaggggcagggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88366944_88368112
seq2: B6Ng01-079K05.b_45_1167

seq1  GAATTCCAGGCCAGATTACAGGCAGACCTTAATTCAAAACAAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGATTACAGGCAGACCTTAATTCAAAACAAACAAACAA  50

seq1  AATTGCCCTATAAGCATTTACACCGTGTGTGTTTTGTAGTAGCATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCTATAAGCATTTACACCGTGTGTGTTTTGTAGTAGCATTAAAA  100

seq1  AAAAAGAAAAAAGAAAAAAAAACCCACAAAGCAAAGGTCAGAGGCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAGAAAAAAAAACCCACAAAGCAAAGGTCAGAGGCATTAT  150

seq1  TTGTAACTTACTGTGGATATTTCAAAAGAACAATTTTTGGCTAACACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACTTACTGTGGATATTTCAAAAGAACAATTTTTGGCTAACACTCA  200

seq1  GAGATGACAGAAATAGACGATTGCGTCACTGCCTGATTAAAACGGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACAGAAATAGACGATTGCGTCACTGCCTGATTAAAACGGAAAAG  250

seq1  CTGAAGGTTTTCCAAAAGGAAACAAGAGGAGGCAAGGAGTCTAGACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGTTTTCCAAAAGGAAACAAGAGGAGGCAAGGAGTCTAGACTGAC  300

seq1  CACTCAGAAGTGTGTGTGTGTGTGAGTGATACCAAGCATCGGTGGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGAAGTGTGTGTGTGTGTGAGTGATACCAAGCATCGGTGGGTGGG  350

seq1  GCCTTTGTGCGGACAAAGTCCATATCTGGATGTGGCTAGTGGACATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTGCGGACAAAGTCCATATCTGGATGTGGCTAGTGGACATTTTT  400

seq1  AGCAGCCCAGCAGCTTGTGACCTGTGACTGGGAGGCTTTTCCCAGGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCAGCAGCTTGTGACCTGTGACTGGGAGGCTTTTCCCAGGGGAC  450

seq1  AAGTGCACAGTCAGAAACTACATGGGGGCAGCTGCCTCCCTGACTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCACAGTCAGAAACTACATGGGGGCAGCTGCCTCCCTGACTTTGCC  500

seq1  TGTGCCCAAACAGTAAGAGTGCGTCATGCCTGATGCATTGCCAGGCAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAAACAGTAAGAGTGCGTCATGCCTGATGCATTGCCAGGCAACG  550

seq1  CAGTGTATCTGGGTGTGTCCCTTAAGGCTCTCTCCAACTCGGTAGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATCTGGGTGTGTCCCTTAAGGCTCTCTCCAACTCGGTAGCTTAT  600

seq1  GCATAGCCTGCTTTGCCTGTGTTCCTGGCTGGTAATGTCCTCAAGAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCTGCTTTGCCTGTGTTCCTGGCTGGTAATGTCCTCAAGAGATA  650

seq1  GCGAGCTCTCTCATTCACTCTTCCCACTCTCCTCTTTCCTGGTTGGTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTCTCTCATTCACTCTTCCCACTCTCCTCTTTCCTGGTTGGTTGA  700

seq1  TACTAAGGATGGAAGCCAAGGCCTTTCGCTTGTTAGGCAAGTACACTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGATGGAAGCCAAGGCCTTTCGCTTGTTAGGCAAGTACACTACC  750

seq1  ACGAGCCACGCCCCCAGCCTGTGACAACTCTCTCCTGGTCTTAGTGTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCCACGCCCCCAGCCTGTGACAACTCTCTCCTGGTCTTAGTGTGCA  800

seq1  AGGCTTGTATTCTCTTACACTGCTACATCGGCAGGCTGTAGTTAGAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTATTCTCTTACACTGCTACATCGGCAGGCTGTAGTTAGAACTG  850

seq1  GAAGTTTCCATTTAGCCTCGGAAGCGAGCCCTCCTCGAACCTGAAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGTTTCCATTTAGCCTCGGAAGCGAGCCCTCCTCGAACCTGAAAG-TT  899

seq1  GACTGTGGAGGGCTCTAGTCACCCCTGCCTGCGACGGACTTTAGAGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGGAGGGCTCTAGTCACCCCTGCCTGCGACGGACTTTAGAGAAAA  949

seq1  TAACTTATCCTCACAAGGTGCCTGGGTGAGGGAGTGCGGCCCAACCTTTC  1000
      | |||||||||||||  |||||||||||| ||||||| ||||||||||||
seq2  T-ACTTATCCTCACA--GTGCCTGGGTGA-GGAGTGC-GCCCAACCTTTC  994

seq1  TTTCAAAAATTGCATAAGACTGCTACCCAGAGGAGGATTTCTTTGCTTCC  1050
      ||   ||||||||   ||||||||| ||||||   |||||| ||||||| 
seq2  TT--CAAAATTGC--TAGACTGCTA-CCAGAG--AGATTTC-TTGCTTC-  1035

seq1  ACACCATGTCTGGTGATTTTTTTTTTCCTGTTTTTAGGAATTTTAAAACT  1100
        | ||||||||| ||||||||||       ||||| |||||    ||||
seq2  -AAACATGTCTGG-GATTTTTTTT------CTTTTA-GAATT----AACT  1072

seq1  GGGTTCTCTTGGAGTTTTGTTCCATGTTGATTTTTGTTGTTTATTTTTGT  1150
      |||||| ||  |||  ||| ||||  ||||      |||| ||  |||||
seq2  GGGTTC-CT--GAG--TTGGTCCA--TTGA------TTGTGTA--TTTGT  1107

seq1  ACACTTTTGTTTAATGTTT  1169
      |||| |    |||||||||
seq2  ACACAT---GTTAATGTTT  1123

seq1: chr1_88437663_88438537
seq2: B6Ng01-079K05.g_65_936 (reverse)

seq1  AACTCCCTGCCCCCTGCCACCCCCCACCCCCCGTTTTTAAAAGGGCTCAA  50
      ||||||||| |||||||||||||||||||||||||||  |||||||||||
seq2  AACTCCCTG-CCCCTGCCACCCCCCACCCCCCGTTTT--AAAGGGCTCAA  47

seq1  GATATTGGCAAGTAACACAATGGGGAGAAAGATGAGAGGGTATTTGGCAA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GATATTGGCAAGTAACAC-ATGGGGAGAAAGATGAGAGGGTATTTGGCAA  96

seq1  ACCTGGGCCAAATTTTCTCCAAAGAAATCGGTTCGCTCACCCAAATCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCAAATTTTCTCCAAAGAAATCGGTTCGCTCACCCAAATCTGC  146

seq1  CCAAGGCTGTGTGGCCTGGGATTCCCTCCTCTCTTTAGTGATCCAAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTGTGTGGCCTGGGATTCCCTCCTCTCTTTAGTGATCCAAGCTA  196

seq1  ATTCATTCCTTCAGTTTGCACAGGATTG-AAATGTGTCTGCCTCTGCCCC  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTCATTCCTTCAGTTTGCACAGGATTGAAAATGTGTCTGCCTCTGCCCC  246

seq1  TAGCACACTGCTAAGAGACCTGGGTTTGCCTGGGGCTGTCTTTATTACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACACTGCTAAGAGACCTGGGTTTGCCTGGGGCTGTCTTTATTACAC  296

seq1  TCTCATGTCTCCAGCAGTTTGATGGCCGCATTAGCATGTCCCAGTGTAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTCTCCAGCAGTTTGATGGCCGCATTAGCATGTCCCAGTGTAGC  346

seq1  CTATAGACTGGACCCGGGTCCCCAGGGTGTTTTCCTTTTCCTGCAGTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGACTGGACCCGGGTCCCCAGGGTGTTTTCCTTTTCCTGCAGTGTT  396

seq1  TGGCATTGAAGCCTTGGACTCTACCACTGAGCATAGCCCCAGCCTGAGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGAAGCCTTGGACTCTACCACTGAGCATAGCCCCAGCCTGAGGT  446

seq1  GCTCATGTGTGTGTGTAGGGTATCATACTTCTGGAATCAGAATCTCCGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTGTGTGTGTAGGGTATCATACTTCTGGAATCAGAATCTCCGGG  496

seq1  GACCCGAGCGAGTACCTAACAATTTTTGAAAACCAATGGCCACACACTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGAGCGAGTACCTAACAATTTTTGAAAACCAATGGCCACACACTGT  546

seq1  GCCAGGCTTTGTCTATGTGTTTCTTCTTCTTCTTCTTTTTGTTTATTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTTTGTCTATGTGTTTCTTCTTCTTCTTCTTTTTGTTTATTTGG  596

seq1  TTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC  646

seq1  TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTCTGCCTC  696

seq1  CCTAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGCCTTGAACTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGCCTTGAACTGC  746

seq1  TCTTCTTGCCTTCATCTCGCAGATGCTAGGTGAGCCATCATGCCTGCTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCCTTCATCTCGCAGATGCTAGGTGAGCCATCATGCCTGCTCC  796

seq1  AGGGAAGCATTTTCCAAGATAATGCTTTCTCCACAGCCATGTGTCCAGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCATTTTCCAAGATAATGCTTTCTCCACAGCCATGTGTCCAGCA  846

seq1  CTGGTACGCGCTGCCTGAAAGAATTC  875
      ||||||||||||||||||||||||||
seq2  CTGGTACGCGCTGCCTGAAAGAATTC  872