BAC Information

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BAC

Clone NameB6Ng01-079N20
Chromosome1 (Build37)
Map Location 83,557,947 - 83,666,152
singlet/doubletdoublet
Overlap genenone
Upstream geneCol4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream gene5033414K04Rik, LOC100039638, Dner
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079N20.bB6Ng01-079N20.g
ACCDH895155DH895156
length1,209291
definitionDH895155|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N20, 5' end.DH895156|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,557,947 - 83,559,166)(83,665,862 - 83,666,152)
sequence
gaattctcactcataccaaatgaagttctagttcagcagttacactgatg
ttgcatttccagtacaggccctggcaggcctctcagcaaacatgcctctt
gaagaaaacatctctgtcctgtgcagattcttctttcctgcctctcatgt
aaattctccaaaacattgattaaatataagtggtgaattatcaattaaat
atatggtagttatttaacttagctgagcattgagttagctgaaagcactt
aaaaactatagtttcacttactctttgagaccctcataaatgtatttgat
accattttaccttatctatctcttattgtctccttcaattcttgcccaca
atcacagccccttcataattttatgtttttgtctccttgtctgtctgtct
gtctatctctgtctctgtctgtctttctctcaacctgtctctctcccttt
cccctcccccatccgcctttccctcttaatccatggattccaattggtgt
tataatctatatgtatattgatgatgtagggtatagatgatgtagtgtca
tccactggggcatatacaatccatcagtggccaattggtcctcctttagg
atggaacttcataaggatgttcagtttttgctggaagtttgactgctttg
gtattatgcaaacagccacagcctttgtgaatctgtgagtgcaaaggcac
tcactgtccatctctaaaagacctagaaaacacttttaaaatatagaggt
attggttctactagacagtatataataatctgatataattaccatttaac
atttaaatgttcaacatatgattcagagaaataaaattagatgcatcttt
ttatttatgtatttatttattaaaatttgtactgataaatgcaatacata
tttaagtatatttagcaaaaacagcacttaaatgttcagatagttctcta
cttgtatgacaaaggcagtcttttaacagtcagttgagagggatgtgata
ttcatgcggatgacttgtcagaggaacaaggacagattgaggaacgagta
ctgcctttgatcacctgcaaggatttgttcaggagacagcgcagcgaata
ctctcagctggtgactctttttacactggactaggaatatgtgagaaagt
taaagtgaatttcatcaccttgaaagtgcgtgcctgagagttgcttacca
tatacaaac
tgtactttgaaaagataaattgtatgacctatgagctttatctcaatcaa
tctgtgaggaagcaaagtaaaattaactgttgaagtctgaccatgaagaa
ctctatgtacagatatttaggtaggcggaaggaaaggaaggaaggaagga
gagggaaggaaagagggagagaatgaggggaagaaagaagagaatgaaga
agggaggttgggagtgagagaggccggaagacggggagggatgagtaaaa
aggagggatggagggaggatgactgcataggcatcctatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_83557947_83559166
seq2: B6Ng01-079N20.b_48_1256

seq1  GAATTCTCACTCATACCAAATGAAGTTCTAGTTCAGCAGTTACACTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTCATACCAAATGAAGTTCTAGTTCAGCAGTTACACTGATG  50

seq1  TTGCATTTCCAGTACAGGCCCTGGCAGGCCTCTCAGCAAACATGCCTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCCAGTACAGGCCCTGGCAGGCCTCTCAGCAAACATGCCTCTT  100

seq1  GAAGAAAACATCTCTGTCCTGTGCAGATTCTTCTTTCCTGCCTCTCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACATCTCTGTCCTGTGCAGATTCTTCTTTCCTGCCTCTCATGT  150

seq1  AAATTCTCCAAAACATTGATTAAATATAAGTGGTGAATTATCAATTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCCAAAACATTGATTAAATATAAGTGGTGAATTATCAATTAAAT  200

seq1  ATATGGTAGTTATTTAACTTAGCTGAGCATTGAGTTAGCTGAAAGCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTAGTTATTTAACTTAGCTGAGCATTGAGTTAGCTGAAAGCACTT  250

seq1  AAAAACTATAGTTTCACTTACTCTTTGAGACCCTCATAAATGTATTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATAGTTTCACTTACTCTTTGAGACCCTCATAAATGTATTTGAT  300

seq1  ACCATTTTACCTTATCTATCTCTTATTGTCTCCTTCAATTCTTGCCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTACCTTATCTATCTCTTATTGTCTCCTTCAATTCTTGCCCACA  350

seq1  ATCACAGCCCCTTCATAATTTTATGTTTTTGTCTCCTTGTCTGTCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCCCCTTCATAATTTTATGTTTTTGTCTCCTTGTCTGTCTGTCT  400

seq1  GTCTATCTCTGTCTCTGTCTGTCTTTCTCTCAACCTGTCTCTCTCCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTCTGTCTCTGTCTGTCTTTCTCTCAACCTGTCTCTCTCCCTTT  450

seq1  CCCCTCCCCCATCCGCCTTTCCCTCTTAATCCATGGATTCCAATTGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCATCCGCCTTTCCCTCTTAATCCATGGATTCCAATTGGTGT  500

seq1  TATAATCTATATGTATATTGATGATGTAGGGTATAGATGATGTAGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCTATATGTATATTGATGATGTAGGGTATAGATGATGTAGTGTCA  550

seq1  TCCACTGGGGCATATACAATCCATCAGTGGCCAATTGGTCCTCCTTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGGGCATATACAATCCATCAGTGGCCAATTGGTCCTCCTTTAGG  600

seq1  ATGGAACTTCATAAGGATGTTCAGTTTTTGCTGGAAGTTTGACTGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTTCATAAGGATGTTCAGTTTTTGCTGGAAGTTTGACTGCTTTG  650

seq1  GTATTATGCAAACAGCCACAGCCTTTGTGAATCTGTGAGTGCAAAGGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGCAAACAGCCACAGCCTTTGTGAATCTGTGAGTGCAAAGGCAC  700

seq1  TCACTGTCCATCTCTAAAAGACCTAGAAAACACTTTTAAAATATAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCCATCTCTAAAAGACCTAGAAAACACTTTTAAAATATAGAGGT  750

seq1  ATTGGTTCTACTAGACAGTATATAATAATCTGATATAATTACCATTTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCTACTAGACAGTATATAATAATCTGATATAATTACCATTTAAC  800

seq1  ATTTAAATGTTCAACATATGATTCAGAGAAATAAAATTAGATGCATCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATGTTCAACATATGATTCAGAGAAATAAAATTAGATGCATCTTT  850

seq1  TTATTTATGTATTTATTTATTAAAATTTGTACTGATAAATGCAATACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTATTTATTTATTAAAATTTGTACTGATAAATGCAATACATA  900

seq1  TTTAAGTATATTTTAGCAAAAACAGCACTTAAATGTTCAGATAGTTCTCT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTATA-TTTAGCAAAAACAGCACTTAAATGTTCAGATAGTTCTCT  949

seq1  ACTTGTATGACAAAGGCAGTCTGTTAACAGTCAGGTTGAGAGGGATGTGA  1000
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  ACTTGTATGACAAAGGCAGTCTTTTAACAGTCA-GTTGAGAGGGATGTGA  998

seq1  ATATCATGGCGGATGAC-TGTCAGAGGAACAAGGGACAGATTGAGGAACG  1049
         |||| ||||||||| |||||||||||||| |||||||||||||||||
seq2  TATTCAT-GCGGATGACTTGTCAGAGGAACAA-GGACAGATTGAGGAACG  1046

seq1  AGTAACTGGCTTTGATCACCTGCAGGGATATG-TCAGGAGACAGCGGCAG  1098
      ||| |||| ||||||||||||||| |||| || |||||||||||| ||||
seq2  AGT-ACTGCCTTTGATCACCTGCAAGGATTTGTTCAGGAGACAGC-GCAG  1094

seq1  CGGAAATACTCTCAGCT-GTGACTC-TTTTACACTGGACTAGGAATA-GT  1145
      ||  ||||||||||||| ||||||| ||||||||||||||||||||| ||
seq2  CG--AATACTCTCAGCTGGTGACTCTTTTTACACTGGACTAGGAATATGT  1142

seq1  GAGAAAGTTAAAAGTGGATTTCATCAACCTTAGAAAGTGCGTGCCCTGAG  1195
      ||||||||| |||||| |||||||| ||||| ||||||||||| ||||||
seq2  GAGAAAGTT-AAAGTGAATTTCATC-ACCTT-GAAAGTGCGTG-CCTGAG  1188

seq1  AGGTTTGCTTTACCATATAACAAAC  1220
      ||  |||| ||||||||| ||||||
seq2  AG--TTGC-TTACCATAT-ACAAAC  1209

seq1: chr1_83665862_83666152
seq2: B6Ng01-079N20.g_75_365 (reverse)

seq1  CCATAGGATGCCTTTGCTGTCTTCCTCCCTCCATCCCTCCTTTTTACTCA  50
      ||||||||||||| ||| ||| ||||||||||||||||||||||||||||
seq2  CCATAGGATGCCTATGCAGTCATCCTCCCTCCATCCCTCCTTTTTACTCA  50

seq1  TCCCTCCCCGTCTTCCGGCCTCTCTCACTCCCAACCTCCCTTCTTCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCGTCTTCCGGCCTCTCTCACTCCCAACCTCCCTTCTTCATTC  100

seq1  TCTTCTTTCTTCCCCTCATTCTCTCCCTCTTTCCTTCCCTCTCCTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCTTCCCCTCATTCTCTCCCTCTTTCCTTCCCTCTCCTTCCTT  150

seq1  CCTTCCTTTCCTTCCGCCTACCTAAATATCTGTACATAGAGTTCTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTTCCTTCCGCCTACCTAAATATCTGTACATAGAGTTCTTCATG  200

seq1  GTCAGACTTCAACAGTTAATTTTACTTTGCTTCCTCACAGATTGATTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTTCAACAGTTAATTTTACTTTGCTTCCTCACAGATTGATTGAG  250

seq1  ATAAAGCTCATAGGTCATACAATTTATCTTTTCAAAGTACA  291
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTCATAGGTCATACAATTTATCTTTTCAAAGTACA  291