BAC Information

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BAC

Clone NameB6Ng01-081L04
Chromosome1 (Build37)
Map Location 76,791,281 - 76,921,894
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081L04.bB6Ng01-081L04.g
ACCDH896469DH896470
length1,1871,151
definitionDH896469|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L04, 5' end.DH896470|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,791,281 - 76,792,484)(76,920,736 - 76,921,894)
sequence
gaattcagaagtggcatagacctttctgtcttgatatcgcttatggactt
gcagttaggaaatacaattcacatgaacttcatacatggctctcttgtta
tggctggtagcttgatgctttctattgagagtgggtctcagtttctcatg
tgtgccttgagtaccttcagaaatgctgctggcttccttcagagaaagtg
atccaaggagaaagaacaaaggaggagaatcttcagtgtcttttatgact
atgcttcaaaagtcacccatagtattctcctccatattttcccagtaaca
tgtgcatccataacagggtgtgggaggagagagtagacaatatgaagcct
agcagataatatgaagcctagacaatatgaagccatgttgactacttggt
gacaacatggaagctgagcaccacacttactgttttatcctatgaattat
taaattattgcatttttatcaaatcaaccctagggagaaacttaattctg
gggttctgcttttcatcctttttattgtctacatgactagtctgtgatat
atatacatatatatatcacatatgtttgtgtgtgtgtgtatgtgtgtttg
tctcttaaaagaaaaaataatgaacaaatgataaatacaggcagagatca
agagaccatcccatttagcacattatctagacagagtcatttttggcaaa
gtccttggtacaggaacagaaactattgtaactgtacaaaggaagtgact
cacctttggtatctgatttctaattcatatattccaagtgcatccttcaa
gaatatgtctatttgaaagaaggttgctcagtccttgaaatacggcatgc
ttggggaagttcctgtcaaacagcactgtctactgccataaaataaatca
ctttcctttatgggagagattgatgtcagtttggtttaatgtgtcacttt
tttttattatttcatagtcattttgtgccatttttaaatgcctggcagta
gaatgaagcaagcacaaccaaaacccttaaaagaagcattcagacatctt
tgcttataagagaattcacacacattctactacctacctttgaagtgaaa
atagagtagattatgaagtaaaccactggagacggccaccaccttatatc
gaagccgtaattttcttgttgtgttaatagactgagg
gaattctcagctgattaggtttgggggaggggccataaagaaagtctttg
aataaaggactggtctattattccccaattttcctccctgtagtcacaga
ggagatttaaaaggcaccgtgtgtaacactattccagaggaattacacaa
agccccaaatctttatataaatttctcaagccttttgttttcattcccat
ttttatagcctctttttcccaggcttggcactctcattaatgcacacaag
caaagccccattgttcaatatggctctctaatgagaaagaataagactgt
atatcgggaatgaaaattgtacatttttatgtggaggtttatagactatt
acttttaattgaaatttgaagtttgtctttacagtgaaggtggagcacac
tggctccctctctgacgtcacagactgcagtggagaactagctttgaaaa
tgctagcactcacctgctggaaggtgcagatagctgcccctgtccaaaga
agttaagacagaatgaaatcctatgtctataaagaggccatctacagtgg
gtaaagacttgcaattattgggagttttttaaagtgctaaaaatggaagc
tgaagaggaaatgtatttacgagcttgtgcaggtgatggaggcaagttct
attttaggaagtaaagttgcttattgtttctcactcagcccaaagaccct
ggtgtgcagcccttggagttactgcaggatggacacacagtatttacacc
aatcatttcaactattataacagatacattttatggtaactaagcttcat
aaagcaatatccttcagagtatgctggaaactgtagcttcagtgccctcc
ctttactctgggcattctcagtgagacaacttcttgggatgtggtagcaa
aatatagaatattatattcacaggttgtcccagtttgcttctctatgctg
tgacaaaatagtgacagaagtaattggggagacagggtgtgtctgctttg
ctggccacagcccattaactagaaagcagaatgggaacttagaggcagga
gctgaagcaaagaaccatggaaaaatgctgcctcctggctgctccctcct
ggcttgctcaactactctctttaaagccagtctctgcctagaaatggctt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_76791281_76792484
seq2: B6Ng01-081L04.b_51_1237

seq1  GAATTCAGAAGTGGCATAGACCTTTCTGTCTTGATATCGCTTATGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGTGGCATAGACCTTTCTGTCTTGATATCGCTTATGGACTT  50

seq1  GCAGTTAGGAAATACAATTCACATGAACTTCATACATGGCTCTCTTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGGAAATACAATTCACATGAACTTCATACATGGCTCTCTTGTTA  100

seq1  TGGCTGGTAGCTTGATGCTTTCTATTGAGAGTGGGTCTCAGTTTCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTAGCTTGATGCTTTCTATTGAGAGTGGGTCTCAGTTTCTCATG  150

seq1  TGTGCCTTGAGTACCTTCAGAAATGCTGCTGGCTTCCTTCAGAGAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTGAGTACCTTCAGAAATGCTGCTGGCTTCCTTCAGAGAAAGTG  200

seq1  ATCCAAGGAGAAAGAACAAAGGAGGAGAATCTTCAGTGTCTTTTATGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGAGAAAGAACAAAGGAGGAGAATCTTCAGTGTCTTTTATGACT  250

seq1  ATGCTTCAAAAGTCACCCATAGTATTCTCCTCCATATTTTCCCAGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCAAAAGTCACCCATAGTATTCTCCTCCATATTTTCCCAGTAACA  300

seq1  TGTGCATCCATAACAGGGTGTGGGAGGAGAGAGTAGACAATATGAAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCCATAACAGGGTGTGGGAGGAGAGAGTAGACAATATGAAGCCT  350

seq1  AGCAGATAATATGAAGCCTAGACAATATGAAGCCATGTTGACTACTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAATATGAAGCCTAGACAATATGAAGCCATGTTGACTACTTGGT  400

seq1  GACAACATGGAAGCTGAGCACCACACTTACTGTTTTATCCTATGAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACATGGAAGCTGAGCACCACACTTACTGTTTTATCCTATGAATTAT  450

seq1  TAAATTATTGCATTTTTATCAAATCAACCCTAGGGAGAAACTTAATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTGCATTTTTATCAAATCAACCCTAGGGAGAAACTTAATTCTG  500

seq1  GGGTTCTGCTTTTCATCCTTTTTATTGTCTACATGACTAGTCTGTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGCTTTTCATCCTTTTTATTGTCTACATGACTAGTCTGTGATAT  550

seq1  ATATACATATATATATCACATATGTTTGTGTGTGTGTGTATGTGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATATATATCACATATGTTTGTGTGTGTGTGTATGTGTGTTTG  600

seq1  TCTCTTAAAAGAAAAAATAATGAACAAATGATAAATACAGGCAGAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAAAGAAAAAATAATGAACAAATGATAAATACAGGCAGAGATCA  650

seq1  AGAGACCATCCCATTTAGCACATTATCTAGACAGAGTCATTTTTGGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATCCCATTTAGCACATTATCTAGACAGAGTCATTTTTGGCAAA  700

seq1  GTCCTTGGTACAGGAACAGAAACTATTGTAACTGTACAAAGGAAGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGGTACAGGAACAGAAACTATTGTAACTGTACAAAGGAAGTGACT  750

seq1  CACCTTTGGTATCTGATTTCTAATTCATATATTCCAAGTGCATCCTTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGGTATCTGATTTCTAATTCATATATTCCAAGTGCATCCTTCAA  800

seq1  GAATATGTCTATTTGAAAGAAGGTTGCTCAGTCCTTGAAATACGGCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTCTATTTGAAAGAAGGTTGCTCAGTCCTTGAAATACGGCATGC  850

seq1  TTGGGGAAGTTCCTGTCAAACAGCACTGTCTACTGCCATAAAATAAATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGTTCCTGTCAAACAGCACTGTCTACTGCCATAAAATAAATCA  900

seq1  CTTTCCTTTATGGGAGAGATTGATGTCAGTTTGGTTTAATGTGTCACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTCCTTTATGGGAGAGATTGATGTCAGTTTGGTTTAATGTGTCAC-TT  949

seq1  TTTTTTATTATTTCATAGTCATTTTGTGCCATTTTTTAAATGCCTGGCAG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTTTATTATTTCATAGTCATTTTGTGCCA-TTTTTAAATGCCTGGCAG  998

seq1  TAGAATGAAGCAAGCACAA-CAAAACCC-TAAAAGAAGCATTCAGACATC  1048
      ||||||||||||||||||| |||||||| |||||||||||||||||||||
seq2  TAGAATGAAGCAAGCACAACCAAAACCCTTAAAAGAAGCATTCAGACATC  1048

seq1  TTTGC-TATAAGAGAATTCACAACACATTCTACTACCTACCTATGAAGTG  1097
      ||||| ||||||||||||||| |||||||||||||||||||| |||||||
seq2  TTTGCTTATAAGAGAATTCAC-ACACATTCTACTACCTACCTTTGAAGTG  1097

seq1  AAAATAGAGTAGAATTTATGAAGTAAAACCACTGAAAGACAGCACAACAA  1147
      |||||||||||||  ||||||||| |||||||||  |||| |  | || |
seq2  AAAATAGAGTAGA--TTATGAAGT-AAACCACTG-GAGACGG--CCACCA  1141

seq1  TCTTAATTATCCAGAAAAGCACATTAATTTTTCTTGTTGTTGTTAATAGC  1197
       ||||  ||||     |||| | |  | ||||||||||| ||||||||| 
seq2  CCTTA--TATC----GAAGC-CGT--AATTTTCTTGTTG-TGTTAATAG-  1180

seq1  ACTGAGG  1204
      |||||||
seq2  ACTGAGG  1187

seq1: chr1_76920736_76921894
seq2: B6Ng01-081L04.g_67_1217 (reverse)

seq1  CAAGCCATTGCTAGGCAGAGACTGGGCTCTATAAGAGAGGTAGCTGAGCA  50
      ||||||||| ||||||||||||| |||| || |||||| |||| ||||||
seq2  CAAGCCATTTCTAGGCAGAGACT-GGCTTTA-AAGAGA-GTAGTTGAGCA  47

seq1  AGCCA-GAGGGAGCAAGCCAGGAAGCAGCATTTCTCCATGG-TCTCTGCT  98
      ||||| |||||||| |||||||| ||||||||| ||||||| ||| ||||
seq2  AGCCAGGAGGGAGC-AGCCAGGAGGCAGCATTTTTCCATGGTTCTTTGCT  96

seq1  TCAGCTCCTGCCTCTAAGTTCCCATTCTGGCTTTCTAGTTAATGGGCTGT  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCAGCTCCTGCCTCTAAGTTCCCATTCT-GCTTTCTAGTTAATGGGCTGT  145

seq1  GGCCAGCAAAGCAGACACACCCTTGTCTCCCCAATTTACTTCTGGTCACT  198
      |||||||||||||||||||||| ||||||||||| |||||||| ||||||
seq2  GGCCAGCAAAGCAGACACACCC-TGTCTCCCCAA-TTACTTCT-GTCACT  192

seq1  ATTTTGTCACAGCAATAGAGAAGCAAACTGGGACAACCTGTGAATATAAT  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCACAGC-ATAGAGAAGCAAACTGGGACAACCTGTGAATATAAT  241

seq1  ATTCTAATATTTTGCTACCACATCCCAAGAAGTTGTCTCACTGAGAATGC  298
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCT-ATATTTTGCTACCACATCCCAAGAAGTTGTCTCACTGAGAATGC  290

seq1  CCAGAGTAAAGGGAGGGCACTGAAGCTACAGTTTCCAGCATACTCTGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTAAAGGGAGGGCACTGAAGCTACAGTTTCCAGCATACTCTGAAG  340

seq1  GATATTGCTTTATGAAGCTTAGTTACCATAAAATGTATCTGTTATAATAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCTTTATGAAGCTTAGTTACCATAAAATGTATCTGTTATAATAG  390

seq1  TTGAAATGATTGGTGTAAATACTGTGTGTCCATCCTGCAGTAACTCCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGATTGGTGTAAATACTGTGTGTCCATCCTGCAGTAACTCCAAG  440

seq1  GGCTGCACACCAGGGTCTTTGGGCTGAGTGAGAAACAATAAGCAACTTTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCACACCAGGGTCTTTGGGCTGAGTGAGAAACAATAAGCAACTTTA  490

seq1  CTTCCTAAAATAGAACTTGCCTCCATCACCTGCACAAGCTCGTAAATACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAAATAGAACTTGCCTCCATCACCTGCACAAGCTCGTAAATACA  540

seq1  TTTCCTCTTCAGCTTCCATTTTTAGCACTTTAAAAAACTCCCAATAATTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTCAGCTTCCATTTTTAGCACTTTAAAAAACTCCCAATAATTG  590

seq1  CAAGTCTTTACCCACTGTAGATGGCCTCTTTATAGACATAGGATTTCATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTTTACCCACTGTAGATGGCCTCTTTATAGACATAGGATTTCATT  640

seq1  CTGTCTTAACTTCTTTGGACAGGGGCAGCTATCTGCACCTTCCAGCAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAACTTCTTTGGACAGGGGCAGCTATCTGCACCTTCCAGCAGGT  690

seq1  GAGTGCTAGCATTTTCAAAGCTAGTTCTCCACTGCAGTCTGTGACGTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTAGCATTTTCAAAGCTAGTTCTCCACTGCAGTCTGTGACGTCAG  740

seq1  AGAGGGAGCCAGTGTGCTCCACCTTCACTGTAAAGACAAACTTCAAATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGCCAGTGTGCTCCACCTTCACTGTAAAGACAAACTTCAAATTT  790

seq1  CAATTAAAAGTAATAGTCTATAAACCTCCACATAAAAATGTACAATTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAGTAATAGTCTATAAACCTCCACATAAAAATGTACAATTTTC  840

seq1  ATTCCCGATATACAGTCTTATTCTTTCTCATTAGAGAGCCATATTGAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGATATACAGTCTTATTCTTTCTCATTAGAGAGCCATATTGAACA  890

seq1  ATGGGGCTTTGCTTGTGTGCATTAATGAGAGTGCCAAGCCTGGGAAAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTTTGCTTGTGTGCATTAATGAGAGTGCCAAGCCTGGGAAAAAG  940

seq1  AGGCTATAAAAATGGGAATGAAAACAAAAGGCTTGAGAAATTTATATAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATAAAAATGGGAATGAAAACAAAAGGCTTGAGAAATTTATATAAA  990

seq1  GATTTGGGGCTTTGTGTAATTCCTCTGGAATAGTGTTACACACGGTGCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGGCTTTGTGTAATTCCTCTGGAATAGTGTTACACACGGTGCCT  1040

seq1  TTTAAATCTCCTCTGTGACTACAGGGAGGAAAATTGGGGAATAATAGACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTCCTCTGTGACTACAGGGAGGAAAATTGGGGAATAATAGACC  1090

seq1  AGTCCTTTATTCAAAGACTTTCTTTATGGCCCCTCCCCCAAACCTAATCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTATTCAAAGACTTTCTTTATGGCCCCTCCCCCAAACCTAATCA  1140

seq1  GCTGAGAATTC  1159
      |||||||||||
seq2  GCTGAGAATTC  1151