BAC Information

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BAC

Clone NameB6Ng01-082B05
Chromosome8 (Build37)1 (Build37)
Map Location 34,934,365 - 34,935,583162,261,875 - 162,261,972
singlet/doubletsingletsinglet
Overlap geneRbpms
Upstream geneLOC100042715, LOC628408, EG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2
Downstream geneLOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159, LOC666746, Dusp4, LOC675578, Tnks
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082B05.bB6Ng01-082B05.g
ACCDH896738DH896739
length1,186215
definitionDH896738|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B05, 5' end.DH896739|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,934,365 - 34,935,583)(162,261,875 - 162,261,972)
sequence
gaattcactgctgctttctgtactgggctgttaatgtttgatcggcttga
tctccttgaccttcaagggaatatttcattaaaggacagagagacactcc
tccacctcctgccactaattaaactactttgtagaagcgggcacacattg
cttctgtctttgttgtattacagctgagccctgggagcctaagttactgc
aggacacagagaggacccaagacttcagtggtaaatgcatcacacctttg
cacgcctgtctcttgcctaacagaggtggcctgcccatctgtttccgaat
gaagagccgtgctcacagggaattccaggattaggaattagctacatgtt
catgggtatgaaatccacgaggcttaaagcttgcaatcaaagcacatgtt
agtgccgcaggagtggacaaccccattcaatcagccatctctatgtttat
gtgctgttcttcacctaccagattaaaatactctctcccggagaaacaca
gttttctgaaaatttattgttaaattaaaaacagttacaacacgataagg
gagacaccaaagaatatgaaaaaaattacgttcacgcattttaaatatgt
tatggtgccttaaaactgcacatgcttaaatgttcatgtctaaacttctt
gagatattggccttggtaataaatgggaaaggcaaataggcagggtcact
accatgaggagtaactttaagaatacacaggtggcaatatgctacacctg
ggcaacgggtatccttgttcagtaaggcacaagcttgcagagtcccaggc
ccttcccgtgtaagctctagtgctgctacactcattgcagccccagatct
atcctgttacatgcagattcctgaggtcactcaaccaggaacagatggta
acattacagaagaaaagtcttgtgtagctcagatgacggagcaattctaa
ccctcctgccatttaggggttgaagctagacatctctctcagatgggctt
agtagaaccctctgtgtctcagtcattgcaacttgtctgagcagtgtctt
agaaatagatctaggaacagacctgtgcaggagagcaagccacagcgaat
gacattcccgcaccattccaacagctcaagaaacatgtatggagacgtcc
agcacttgggaggcaaggcaggcggattctggtcta
cagaagattaagacagggagatctctgagttcaaggtcatctgggattaa
tggtgtgctggcacacacatttaatctgggttaccccttctgctggaaac
ttacataaggacattggaagaagaaagattctctcattctctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctctct
ctctcccccccctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_34934365_34935583
seq2: B6Ng01-082B05.b_46_1231

seq1  GAATTCACTGCTGCTTTCTGTACTGGGCTGTTAATGTTTGATCGGCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCTGCTTTCTGTACTGGGCTGTTAATGTTTGATCGGCTTGA  50

seq1  TCTCCTTGACCTTCAAGGGAATATTTCATTAAAGGACAGAGAGACACTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGACCTTCAAGGGAATATTTCATTAAAGGACAGAGAGACACTCC  100

seq1  TCCACCTCCTGCCACTAATTAAACTACTTTGTAGAAGCGGGCACACATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCTGCCACTAATTAAACTACTTTGTAGAAGCGGGCACACATTG  150

seq1  CTTCTGTCTTTGTTGTATTACAGCTGAGCCCTGGGAGCCTAAGTTACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTCTTTGTTGTATTACAGCTGAGCCCTGGGAGCCTAAGTTACTGC  200

seq1  AGGACACAGAGAGGACCCAAGACTTCAGTGGTAAATGCATCACACCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACAGAGAGGACCCAAGACTTCAGTGGTAAATGCATCACACCTTTG  250

seq1  CACGCCTGTCTCTTGCCTAACAGAGGTGGCCTGCCCATCTGTTTCCGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGTCTCTTGCCTAACAGAGGTGGCCTGCCCATCTGTTTCCGAAT  300

seq1  GAAGAGCCGTGCTCACAGGGAATTCCAGGATTAGGAATTAGCTACATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCGTGCTCACAGGGAATTCCAGGATTAGGAATTAGCTACATGTT  350

seq1  CATGGGTATGAAATCCACGAGGCTTAAAGCTTGCAATCAAAGCACATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTATGAAATCCACGAGGCTTAAAGCTTGCAATCAAAGCACATGTT  400

seq1  AGTGCCGCAGGAGTGGACAACCCCATTCAATCAGCCATCTCTATGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCGCAGGAGTGGACAACCCCATTCAATCAGCCATCTCTATGTTTAT  450

seq1  GTGCTGTTCTTCACCTACCAGATTAAAATACTCTCTCCCGGAGAAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTTCTTCACCTACCAGATTAAAATACTCTCTCCCGGAGAAACACA  500

seq1  GTTTTCTGAAAATTTATTGTTAAATTAAAAACAGTTACAACACGATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGAAAATTTATTGTTAAATTAAAAACAGTTACAACACGATAAGG  550

seq1  GAGACACCAAAGAATATGAAAAAAATTACGTTCACGCATTTTAAATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACCAAAGAATATGAAAAAAATTACGTTCACGCATTTTAAATATGT  600

seq1  TATGGTGCCTTAAAACTGCACATGCTTAAATGTTCATGTCTAAACTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGCCTTAAAACTGCACATGCTTAAATGTTCATGTCTAAACTTCTT  650

seq1  GAGATATTGGCCTTGGTAATAAATGGGAAAGGCAAATAGGCAGGGTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATTGGCCTTGGTAATAAATGGGAAAGGCAAATAGGCAGGGTCACT  700

seq1  ACCATGAGGAGTAACTTTAAGAATACACAGGTGGCAATATGCTACACCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGGAGTAACTTTAAGAATACACAGGTGGCAATATGCTACACCTG  750

seq1  GGCAACGGGTATCCTTGTTCAGTAAGGCACAAGCTTGCAGAGTCCCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGGGTATCCTTGTTCAGTAAGGCACAAGCTTGCAGAGTCCCAGGC  800

seq1  CCTTCCCGTGTAAGCTCTAGTGCTGCTACACTCATTGCAGGCCCCAGATC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTCCCGTGTAAGCTCTAGTGCTGCTACACTCATTGCA-GCCCCAGATC  849

seq1  TATCCTGTTACATGCAGATTCCTGAGGTCACTCAACCAGGAACAGATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGTTACATGCAGATTCCTGAGGTCACTCAACCAGGAACAGATGGT  899

seq1  AACATTACAGAAGAAAAGTCTTGTGTAGCTCAGGATGACGGAGCAATTCT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACATTACAGAAGAAAAGTCTTGTGTAGCTCA-GATGACGGAGCAATTCT  948

seq1  AACCCTCCTGCCATTTAGGGGTTGAAGCTAGACATCTCTCTCAGATGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCCTGCCATTTAGGGGTTGAAGCTAGACATCTCTCTCAGATGGGC  998

seq1  TTAGTTAGAACCCTCTGTGTCTCAGGTCATTGCCAAACTTGTCTGGAGGC  1050
      |||| ||||||||||||||||||| ||||||||  ||||||||||   ||
seq2  TTAG-TAGAACCCTCTGTGTCTCA-GTCATTGC--AACTTGTCTG--AGC  1042

seq1  AGAAGGTCTTAGAAATAGATCTAGGAACAGACCTGTGCAGGGAGAGCAAG  1100
      ||   |||||||||||||||||||||||||||||||||| ||||||||||
seq2  AG--TGTCTTAGAAATAGATCTAGGAACAGACCTGTGCA-GGAGAGCAAG  1089

seq1  CCAACAGCG-ATGACATTCCGGGCAAACAAT-CAACAGCTCCAAAGAACA  1148
      || |||||| |||||||||| |   | || | |||||||| |||  ||||
seq2  CC-ACAGCGAATGACATTCCCG--CACCATTCCAACAGCT-CAAGAAACA  1135

seq1  TGTATGAGAACGTCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGA  1198
      ||||||   |||| ||||||||||||||||| |||||||||||||     
seq2  TGTATGGAGACGT-CCAGCACTTGGGAGGCA-AGGCAGGCGGATT-----  1178

seq1  GTTCTAGGCCAGCCTGGTCTA  1219
                   ||||||||
seq2  -------------CTGGTCTA  1186

seq1: chr1_162261875_162261972
seq2: B6Ng01-082B05.g_204_290 (reverse)

seq1  AGAGGGGAAGGGAGAGGGAGAGAAAATGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||       | ||||||||    |||||||||||||||||||||||
seq2  AGAGGG-------GGGGGAGAGA----GAGAGAGAGAGAGAGAGAGAGAG  39

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAGAA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAGAGAA  87