BAC Information

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BAC

Clone NameB6Ng01-082F01
Chromosome1 (Build37)
Map Location 166,078,497 - 166,153,733
singlet/doubletdoublet
Overlap geneSelp, F5
Upstream genePrrx1, LOC100039597, Scyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell
Downstream geneSlc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082F01.bB6Ng01-082F01.g
ACCDH896904DH896905
length1,0561,031
definitionDH896904|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F01, 5' end.DH896905|Mus musculus domesticus DNA, BAC clone: B6Ng01-082F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,152,674 - 166,153,733)(166,078,497 - 166,079,542)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttattataaaaagtagcctggtatt
tctttgaaatccctctgaagaagcaattccatatttacagaggactttcc
atatttgggatgtgctcagccagtcttttccagctttcaattagaatgac
aaataatgtttagaattttaattgttggtttctctttgcaaatcccaatt
cctctgtgagtcactcaacttctttccataggaaccagttaggagataac
aaacagggcattgtcttatgccaggggaggagacaccaggtagccaaagc
tgtgatttcagctaaacaccttcaaagggagagacaaaatgtgtggaact
tgttttgcttcaaagtcatttatagcccaaacattttgttgatagtaatt
tttcagatcaattatgagttattaattaacactcatatctacctctctag
ggggtgtggcttacactcatttaatttccattttatgctatgattgtctg
cttgtctggtagacactaacaagtaagagttctgattcacttttccctta
cggtcttatttatctcatagataagataaccaggttgggtgtaccagcct
ggttagtgagttccaaggtaaccagggctatatagtgaggagagagagag
agagagagagagagagagagagagagagagagagaaatgggaacacatct
aatttctatagaagagataccaagaactagctttatggagctggagagat
ggctcagcagttaagagcactgactgttcttcccaaggtactgagttcaa
atcccagcaaccacatggtgggttcacaaccattcatagtgaaatctgac
aaccttcttctggtgtggtctgaagacagctacagtgtacttagatataa
taacaaataaatctttaaaaaaataaaattatgtggctactaaaaaaata
aatttagaatctttatccttaattaaggggtcagagcgtacggctctagc
aagaat
gaattccagggtagggggcggtctgttgtttcagaagctaccatgggctg
gctgatgggagaactagcttttatttcatggcaggtcatctttgtgtttt
tgtttttcagccacctaggaacatacggagtcttcactaacgctgcatat
gacccaaccccttaaggtgagttccctatgaggacggctttgaagaaaat
agaacagtaggtgaaaaggcaagaataccagtcttgaattttctttatat
catatgtatggaattttaagcatgtattagaatattaagctctgatattg
gcaacaagtatgtgtgactgagtggagacaatagaatttatccttggatt
tccattcccgcccagatgagaggttctagcagtacataacctgttccagg
atgtttgagatcccactgatgccaaggaagtgacgttgacagtgtgggct
tgcctcaaaatcccctgtgctacctgagcagaaaccacctgaagtcatct
tttcaaacagtacagggaaaagtcccctttcctgctggtagacagtgcag
aacctagaaagaggcaaatgtctcagacatcagaggggcccacggtgaaa
gacttctttatcttgtaaggaagcagtcctttaattagtttgtttctttt
tcagaaacccggtctgccaatgtctcattcgatttctcaggattccacat
gcaagtgtcaagtttcctgtcacacttgactgtaactccatggcatttgg
gcatttgctgaggttctctgtagtttaaaacaaaaaacaaaacaaaacaa
aaaaaaggacaggaacctagaaaaagaactatgcactttcccacctctcc
acccacccctttctgctccgccctcacttcctccagctcgcccctttctt
gctcgccctcactttcttcagcttcgcccttctgctcgcccctcactttc
ttcagctcagcacagaccagagcaatgtttctgcttctgttttgtgcttg
ttgttacttgcttgttgctgaaacggagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166152674_166153733
seq2: B6Ng01-082F01.b_46_1101 (reverse)

seq1  ATTCCTGCT-GAGCCGTTACGCTCTTGACACCTTTAATTTAAGGATAAAG  49
      |||| |||| |||||| ||||||| |||| ||||  | ||||||||||||
seq2  ATTCTTGCTAGAGCCG-TACGCTC-TGACCCCTT--AATTAAGGATAAAG  46

seq1  AATCTAATATTTTTATTTTTTTAGTAAGCCACATAATTTTAATTTTTTAA  99
      | |||||    |||||||||||||| |||||||||||||| ||||||| |
seq2  ATTCTAA---ATTTATTTTTTTAGT-AGCCACATAATTTT-ATTTTTTTA  91

seq1  AAGATTTATTTGTTATTATATCTAAGTACACTGTAGCTGTCTTCAGA-CA  148
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGATTTATTTGTTATTATATCTAAGTACACTGTAGCTGTCTTCAGACCA  141

seq1  CACCAGAAG-AGGGTGTCAGATCTCACTATGAATGGTTGTGAA-CCACCA  196
      ||||||||| ||| |||||||| |||||||||||||||||||| ||||||
seq2  CACCAGAAGAAGGTTGTCAGATTTCACTATGAATGGTTGTGAACCCACCA  191

seq1  TGTGGTTGCTGGGATTTGAACTCAGTACCTTGGGAAGAACAGTCAGTGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGATTTGAACTCAGTACCTTGGGAAGAACAGTCAGTGCT  241

seq1  CTTAACTGCTGAGCCATCTCTCCAGCTCCATAAAGCTAGTTCTTGGTATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGCTGAGCCATCTCTCCAGCTCCATAAAGCTAGTTCTTGGTATC  291

seq1  TCTTCTATAG-AATTAGATGTGTTCCCATTTCTCTCTCTCTCTCTCTCTC  345
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATAGAAATTAGATGTGTTCCCATTTCTCTCTCTCTCTCTCTCTC  341

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCCTCACTATATAGCCCTGGTTACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCCTCACTATATAGCCCTGGTTACCT  391

seq1  TGGAACTCACTAACCAGGCTGGTACACCCAACCTGGTTATCTTATCTATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTAACCAGGCTGGTACACCCAACCTGGTTATCTTATCTATG  441

seq1  AGATAAATAAGACCGTAAGGGAAAAGTGAATCAGAACTCTTACTTGTTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAATAAGACCGTAAGGGAAAAGTGAATCAGAACTCTTACTTGTTAG  491

seq1  TGTCTACCAGACAAGCAGACAATCATAGCATAAAATGGAAATTAAATGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCAGACAAGCAGACAATCATAGCATAAAATGGAAATTAAATGAG  541

seq1  TGTAAGCCACACCCCCTAGAGAGGTAGATATGAGTGTTAATTAATAACTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCACACCCCCTAGAGAGGTAGATATGAGTGTTAATTAATAACTC  591

seq1  ATAATTGATCTGAAAAATTACTATCAACAAAATGTTTGGGCTATAAATGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGATCTGAAAAATTACTATCAACAAAATGTTTGGGCTATAAATGA  641

seq1  CTTTGAAGCAAAACAAGTTCCACACATTTTGTCTCTCCCTTTGAAGGTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAGCAAAACAAGTTCCACACATTTTGTCTCTCCCTTTGAAGGTGT  691

seq1  TTAGCTGAAATCACAGCTTTGGCTACCTGGTGTCTCCTCCCCTGGCATAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAAATCACAGCTTTGGCTACCTGGTGTCTCCTCCCCTGGCATAA  741

seq1  GACAATGCCCTGTTTGTTATCTCCTAACTGGTTCCTATGGAAAGAAGTTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGCCCTGTTTGTTATCTCCTAACTGGTTCCTATGGAAAGAAGTTG  791

seq1  AGTGACTCACAGAGGAATTGGGATTTGCAAAGAGAAACCAACAATTAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCACAGAGGAATTGGGATTTGCAAAGAGAAACCAACAATTAAAA  841

seq1  TTCTAAACATTATTTGTCATTCTAATTGAAAGCTGGAAAAGACTGGCTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACATTATTTGTCATTCTAATTGAAAGCTGGAAAAGACTGGCTGA  891

seq1  GCACATCCCAAATATGGAAAGTCCTCTGTAAATATGGAATTGCTTCTTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCCAAATATGGAAAGTCCTCTGTAAATATGGAATTGCTTCTTCA  941

seq1  GAGGGATTTCAAAGAAATACCAGGCTACTTTTTATAATAAAGAACTCAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATTTCAAAGAAATACCAGGCTACTTTTTATAATAAAGAACTCAAG  991

seq1  AAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAATGGGGCTCAGAG  1041

seq1  CTGAACAAAGAATTC  1060
      |||||||||||||||
seq2  CTGAACAAAGAATTC  1056

seq1: chr1_166078497_166079542
seq2: B6Ng01-082F01.g_64_1094

seq1  GAATTCCAGGGTAGGGGGCGGTCTGTTGTTTCAGAAGCTACCATGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGGGGGCGGTCTGTTGTTTCAGAAGCTACCATGGGCTG  50

seq1  GCTGATGGGAGAACTAGCTTTTATTTCATGGCAGGTCATCTTTGTGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGGAGAACTAGCTTTTATTTCATGGCAGGTCATCTTTGTGTTTT  100

seq1  TGTTTTTCAGCCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCAGCCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATAT  150

seq1  GACCCAACCCCTTAAGGTGAGTTCCCTATGAGGACGGCTTTGAAGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAACCCCTTAAGGTGAGTTCCCTATGAGGACGGCTTTGAAGAAAAT  200

seq1  AGAACAGTAGGTGAAAAGGCAAGAATACCAGTCTTGAATTTTCTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTAGGTGAAAAGGCAAGAATACCAGTCTTGAATTTTCTTTATAT  250

seq1  CATATGTATGGAATTTTAAGCATGTATTAGAATATTAAGCTCTGATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGGAATTTTAAGCATGTATTAGAATATTAAGCTCTGATATTG  300

seq1  GCAACAAGTATGTGTGACTGAGTGGAGACAATAGAATTTATCCTTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAGTATGTGTGACTGAGTGGAGACAATAGAATTTATCCTTGGATT  350

seq1  TCCATTCCCGCCCAGATGAGAGGTTCTAGCAGTACATAACCTGTTCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCCGCCCAGATGAGAGGTTCTAGCAGTACATAACCTGTTCCAGG  400

seq1  ATGTTTGAGATCCCACTGATGCCAAGGAAGTGACGTTGACAGTGTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAGATCCCACTGATGCCAAGGAAGTGACGTTGACAGTGTGGGCT  450

seq1  TGCCTCAAAATCCCCTGTGCTACCTGAGCAGAAACCACCTGAAGTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCAAAATCCCCTGTGCTACCTGAGCAGAAACCACCTGAAGTCATCT  500

seq1  TTTCAAACAGTACAGGGAAAAGTCCCCTTTCCTGCTGGTAGACAGTGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACAGTACAGGGAAAAGTCCCCTTTCCTGCTGGTAGACAGTGCAG  550

seq1  AACCTAGAAAGAGGCAAATGTCTCAGACATCAGAGGGGCCCACGGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGAAAGAGGCAAATGTCTCAGACATCAGAGGGGCCCACGGTGAAA  600

seq1  GACTTCTTTATCTTGTAAGGAAGCAGTCCTTTAATTAGTTTGTTTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTTATCTTGTAAGGAAGCAGTCCTTTAATTAGTTTGTTTCTTTT  650

seq1  TCAGAAACCCGGTCTGCCAATGTCTCATTCGATTTCTCAGGATTCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACCCGGTCTGCCAATGTCTCATTCGATTTCTCAGGATTCCACAT  700

seq1  GCAAGTGTCAAGTTTCCTGTCACACTTGACTGTAACTCCATGGCATTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTCAAGTTTCCTGTCACACTTGACTGTAACTCCATGGCATTTGG  750

seq1  GCATTTGCTGAGGTTCTCTGTAGTTTAAAACAAAAAACAAAACAAAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCTGAGGTTCTCTGTAGTTTAAAACAAAAAACAAAACAAAACAA  800

seq1  AAAAAAGGACAGGAACCTAGAAAAAGAACTATGCACTTTCCCACCTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGACAGGAACCTAGAAAAAGAACTATGCACTTTCCCACCTCTCC  850

seq1  ACCCACCCCTTCCTGCTCCGCCCCTCACCTTCCTCCAGCTCCGCCCCTTC  900
      ||||||||||| |||||||| |||||| |||||||||||||  ||| |||
seq2  ACCCACCCCTTTCTGCTCCG-CCCTCA-CTTCCTCCAGCTCGCCCCTTTC  898

seq1  CTGCTCCGCCCCTCACCTTCCTCCAGCTCCGCCCCTTCCTGCTCCGCCCC  950
       |||||   |||||| ||| || ||||| |||||  | ||||| ||||||
seq2  TTGCTC--GCCCTCA-CTTTCTTCAGCTTCGCCC--TTCTGCT-CGCCCC  942

seq1  TCACCTTCCTCCAGCTCAGCCACAGACCCAGGAGCAAATGTTTCTGC-TC  999
      ||| ||| || |||||||| ||||||||   |||| ||||||||||| ||
seq2  TCA-CTTTCTTCAGCTCAG-CACAGACC--AGAGC-AATGTTTCTGCTTC  987

seq1  TGGTCTGTGGCTTGTTGTTACTTTGCTGTTGCTGAAAACGGGAGAGT  1046
      || | ||| ||||||||||||||   |||||||||||   |||||||
seq2  TGTTTTGT-GCTTGTTGTTACTTGCTTGTTGCTGAAA--CGGAGAGT  1031