BAC Information

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BAC

Clone NameB6Ng01-082J08
Chromosome1 (Build37)
Map Location 76,826,329 - 77,024,657
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082J08.bB6Ng01-082J08.g
ACCDH897096DH897097
length1,164479
definitionDH897096|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J08, 5' end.DH897097|Mus musculus domesticus DNA, BAC clone: B6Ng01-082J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,023,470 - 77,024,657)(76,826,329 - 76,826,813)
sequence
gaattcttcttaaccaaggcccccagtgcttgtgtagaaaatgaaagtga
cttctcttttctgcaatatgcccttttgtttggataaacacaaaaataat
tagtccagatgaacacaggaacagagtctttggagaaaaattaacttgag
tgtcttacacaggagccagctggtatttctacaatatgtgttctattctg
agccaaaatactaacaatagcacacagcacagttgggagtaaaaggacaa
gggccactgagtgtgaattttctgccaatatgtcgccaccacacaagcat
ctgttaggagggagcaggtgtgatctatgtccccgcattatttggcttca
aaaagtctcacttgtttctttgggtttgacacagtttttgatgactttgg
gttggcgcagtgagatgtacgagaggattttgctgttttatttatatacc
tacatccattcccaacagtgaggaaatctactcattgatgaccatcccag
tgggtaatatggccagaatacgagacgcaacaagccttgggtgagcaaat
atcacctttttttctgcattattgtcattgtttacctaccatcttcctgg
gcttctcagcttagaacaggatagctttcttatcatgcaacatatagtct
gtatttgtgaaatactatttatttatttatttatttatttatttatttat
ttacttatttatcatttatgtgtgtaggaagacaaatgtgttcacgtgta
catgtgcatatgtggaaacaagaaggcagcctcaggtattattacttaag
cgccttatacgccttatacttttgttcaggactgggtctcttactggcct
gaaacactatcagcttgaataggctacctgaccagttagccccagggatc
caactgcccctgcctcccacctcacccttgatggaattatacatgcatgc
ctgcatgcctccattccctgtttgtgttgtttttttttttaacatgagtt
cttaaagatgactcagattctttgcttgcaagacaagccttttgtaatga
gcatctctctacccctgactggtttcccaatcattcttgtgtctctccca
tccctctagccaccatatctggatcagctgaataaagaagcagcactggg
agtgtttgcttcta
aataaatgttagcaagagctattgttattattttccaaaattagttcagt
aatccgtttgcacacacaactacttttgcaaccctgaggccaagagtacc
ctcagttacctttcgagatgactaatttcattggctgatatccagggccc
aatgctaaaactcctccatgcatgtcaataattgaattccttcctgtgca
caaatgctggccacagaggctaaaaatctgtttaataagagagaaaaaaa
gtcaaccagagttaaaaataaatggctcagaactgaggttctcatttaaa
gatttgttttgatatttggggtctggggtttcctaaatatccagatgctt
ttaaacacctaacatgtccactcctcacagctcatgtcagctgagagatg
gggtggggggagaatgaggagagacaatgtgtgtgctaaatacttggtgc
ccataaccgagagagagggagagagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77023470_77024657
seq2: B6Ng01-082J08.b_43_1206 (reverse)

seq1  TAGAAGACAAAACACTCCCAGCTGCTGCTTCTCTTATTCATGCTGATCCA  50
      ||||||   |||||||||||| |||||||||| ||||||| |||||||||
seq2  TAGAAG--CAAACACTCCCAG-TGCTGCTTCT-TTATTCA-GCTGATCCA  45

seq1  GATATGGGTGGCTAGAGGGGATGGGGAGAGACAC-AGGATGAATGGGGAA  99
      ||||| |||||||||| ||||| ||||||||||| || |||| ||||  |
seq2  GATAT-GGTGGCTAGA-GGGAT-GGGAGAGACACAAGAATGATTGGG--A  90

seq1  AACCAGTTCAGGGGGTTAGAGAGATGGCTCCATTAACAAAAGGCTTGTCT  149
      |||||| |||||||  ||||||||| ||| |||| |||||||||||||||
seq2  AACCAG-TCAGGGG--TAGAGAGAT-GCT-CATT-ACAAAAGGCTTGTCT  134

seq1  TGCAAGCAAAAGAATCTGAGTTCATTCTTTAAGAACTCATGTTAAAAAAA  199
      ||||||| |||||||||||| ||| |||||||||||||||||||||||||
seq2  TGCAAGC-AAAGAATCTGAG-TCA-TCTTTAAGAACTCATGTTAAAAAAA  181

seq1  AAAAAACAACAACAAAAAACAGGGAATGGAGGCATGCAGGCATGCATGTA  249
      ||     |||||| | ||||||||||||||||||||||||||||||||||
seq2  AA-----AACAAC-ACAAACAGGGAATGGAGGCATGCAGGCATGCATGTA  225

seq1  TAATTCCATCAAGGGTGAGGTGGGAGGCAGGGGCAGTTGGATCCCTGGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCATCAAGGGTGAGGTGGGAGGCAGGGGCAGTTGGATCCCTGGGG  275

seq1  CTAACTGGTCAGGTAGCCTATTCAAGCTGATAGTGTTTCAGGCCAGTAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGGTCAGGTAGCCTATTCAAGCTGATAGTGTTTCAGGCCAGTAAG  325

seq1  AGACCCAGTCCTGAACAAAAGTATAAGGCGTATAAGGCGCTTAAGTAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGTCCTGAACAAAAGTATAAGGCGTATAAGGCGCTTAAGTAATA  375

seq1  ATACCTGAGGCTGCCTTCTTGTTTCCACATATGCACATGTACACGTGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGAGGCTGCCTTCTTGTTTCCACATATGCACATGTACACGTGAAC  425

seq1  ACATTTGTCTTCCTACACACATAAATGATAAATAAGTAAATAAATAAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTCTTCCTACACACATAAATGATAAATAAGTAAATAAATAAATA  475

seq1  AATAAATAAATAAATAAATAAATAGTATTTCACAAATACAGACTATATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAATAAATAGTATTTCACAAATACAGACTATATGT  525

seq1  TGCATGATAAGAAAGCTATCCTGTTCTAAGCTGAGAAGCCCAGGAAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATAAGAAAGCTATCCTGTTCTAAGCTGAGAAGCCCAGGAAGATG  575

seq1  GTAGGTAAACAATGACAATAATGCAGAAAAAAAGGTGATATTTGCTCACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTAAACAATGACAATAATGCAGAAAAAAAGGTGATATTTGCTCACC  625

seq1  CAAGGCTTGTTGCGTCTCGTATTCTGGCCATATTACCCACTGGGATGGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTGTTGCGTCTCGTATTCTGGCCATATTACCCACTGGGATGGTC  675

seq1  ATCAATGAGTAGATTTCCTCACTGTTGGGAATGGATGTAGGTATATAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGAGTAGATTTCCTCACTGTTGGGAATGGATGTAGGTATATAAAT  725

seq1  AAAACAGCAAAATCCTCTCGTACATCTCACTGCGCCAACCCAAAGTCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCAAAATCCTCTCGTACATCTCACTGCGCCAACCCAAAGTCATC  775

seq1  AAAAACTGTGTCAAACCCAAAGAAACAAGTGAGACTTTTTGAAGCCAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTGTCAAACCCAAAGAAACAAGTGAGACTTTTTGAAGCCAAAT  825

seq1  AATGCGGGGACATAGATCACACCTGCTCCCTCCTAACAGATGCTTGTGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGGGGACATAGATCACACCTGCTCCCTCCTAACAGATGCTTGTGTG  875

seq1  GTGGCGACATATTGGCAGAAAATTCACACTCAGTGGCCCTTGTCCTTTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGACATATTGGCAGAAAATTCACACTCAGTGGCCCTTGTCCTTTTA  925

seq1  CTCCCAACTGTGCTGTGTGCTATTGTTAGTATTTTGGCTCAGAATAGAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACTGTGCTGTGTGCTATTGTTAGTATTTTGGCTCAGAATAGAAC  975

seq1  ACATATTGTAGAAATACCAGCTGGCTCCTGTGTAAGACACTCAAGTTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGTAGAAATACCAGCTGGCTCCTGTGTAAGACACTCAAGTTAAT  1025

seq1  TTTTCTCCAAAGACTCTGTTCCTGTGTTCATCTGGACTAATTATTTTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCAAAGACTCTGTTCCTGTGTTCATCTGGACTAATTATTTTTGT  1075

seq1  GTTTATCCAAACAAAAGGGCATATTGCAGAAAAGAGAAGTCACTTTCATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCAAACAAAAGGGCATATTGCAGAAAAGAGAAGTCACTTTCATT  1125

seq1  TTCTACACAAGCACTGGGGGCCTTGGTTAAGAAGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACAAGCACTGGGGGCCTTGGTTAAGAAGAATTC  1164

seq1: chr1_76826329_76826813
seq2: B6Ng01-082J08.g_69_553

seq1  GAATTCAATAAATGTTAGCAAGAGCTATTGTTATTATTTTCCAAAATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATGTTAGCAAGAGCTATTGTTATTATTTTCCAAAATTAG  50

seq1  TTCAGTAATCCGTTTGCACACACAACTACTTTTGCAACCCTGAGGCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATCCGTTTGCACACACAACTACTTTTGCAACCCTGAGGCCAAG  100

seq1  AGTACCCTCAGTTACCTTTCGAGATGACTAATTTCATTGGCTGATATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCTCAGTTACCTTTCGAGATGACTAATTTCATTGGCTGATATCCA  150

seq1  GGGCCCAATGCTAAAACTCCTCCATGCATGTCAATAATTGAATTCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCAATGCTAAAACTCCTCCATGCATGTCAATAATTGAATTCCTTCC  200

seq1  TGTGCACAAATGCTGGCCACAGAGGCTAAAAATCTGTTTAATAAGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACAAATGCTGGCCACAGAGGCTAAAAATCTGTTTAATAAGAGAGA  250

seq1  AAAAAAGTCAACCAGAGTTAAAAATAAATGGCTCAGAACTGAGGTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTCAACCAGAGTTAAAAATAAATGGCTCAGAACTGAGGTTCTCA  300

seq1  TTTAAAGATTTGTTTTGATATTTGGGGTCTGGGGTTTCCTAAATATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATTTGTTTTGATATTTGGGGTCTGGGGTTTCCTAAATATCCAG  350

seq1  ATGCTTTTAAACACCTAACATGTCCACTCCTCACAGCTCATGTCAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTAAACACCTAACATGTCCACTCCTCACAGCTCATGTCAGCTGA  400

seq1  GAGATGGGGTGGGGGGAGAATGAGGAGAGACAATGTGTGTGCTAAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGGGTGGGGGGAGAATGAGGAGAGACAATGTGTGTGCTAAATACT  450

seq1  TGGTGCCCATAACCGAGAGAGAGGGAGAGAGAGAG  485
      |||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCATAACCGAGAGAGAGGGAGAGAGAGAG  485