BAC Information

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BAC

Clone NameB6Ng01-083C19
Chromosome1 (Build37)
Map Location 66,347,556 - 66,499,230
singlet/doubletdoublet
Overlap geneMtap2
Upstream genePthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf, LOC667781, EG667786
Downstream geneC030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083C19.bB6Ng01-083C19.g
ACCDH897512DH897513
length1,1591,090
definitionDH897512|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C19, 5' end.DH897513|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,347,556 - 66,348,721)(66,498,133 - 66,499,230)
sequence
gaattcttcatagatctttgtggttgggctagagctaaggttaattaatg
ctaagagcatataggcccacaaagaaaatattaagtaatgaagaagcctt
tttgcatttttaataagacggtatcaaaattaacaacctcatttcttaat
atgcttatttaaaaaaaatttatccacagttacttattgagcttagaaag
aattcaagacctagtgcttaaaacaataaagccatctgacaactagtttg
tggtatgatttgaacacaatgtgagaaagtaggcccctgtgggctagcca
ggaaacacaagtaatgctaatgctctccttctcaagttgggaaatgccag
tcttccactcccatctttcacacaggattaattatgaaacatggccttgc
tctctatttctgtagtgtgtagctggcatggtacttgtcattgtgctaat
gacgtattccagttgttttattcagggctagctctgggcaagggaagctt
tctgcttgagtatattggaaaaaaacaccttcagcatttctttgaagatt
tgtgattctcctatttattagtcttcttgtgttaggcaaatttatttttc
tgagttttaacttcatcatttgtgatgaataacaatttcttaattataag
gcaagcctcataaagttctcctactctcccctctactgcttggaaagaca
gaaatccaagttggtaccaaattccatctgatgcagctccattcatcttt
gtgaacatatgcatggacacttgcatttatacacaagcttcatggcctgg
tttatttgtaagtgtttcagcatcagaattatacaacatttggatcagca
aaggagtggtcagaaacttttattgaggtcccacaggtaaggaaatagat
atcttttaactcttctagtttaatatactgttcttttgaactactaaaaa
taatttaacactattaagaagtaacacaaaatcatcattgggaaatctta
gtccccaattacttgtagtttaaaagatattttttgcagaattcatttaa
gattcatgtgaattttgaattctatggcttctgattctattttgagctca
gacaatagactgttggtatcatcggaatgctctattggaaacatcctgct
gcatgatga
gaattcactatttaacccatgttggcttgagcctggtgcaatctgagttt
caaatgccctagtgctggggttacagtcatgtgctactattcctggctct
gttaatactagtaagctataatttctggcctttgatttttattttaatat
tagtggaatatttccttccaaagaaaaagtaaattgcccatttccagctg
gatttttcctgcttttcttaaagtgtgtgtttgtgaacaggctgcttgaa
tagtgtgctattgccttggcaccttagcacctgagaacggttgtaggaag
gaataataaattctatacaagagctaagagcatgcaaacttatcctctcc
attttcatagtgagctgacagagatatttcactaaccaagaaattaaaaa
ctcacttaatgttagaatttttttggtgaaatataggttatttgtagtgt
atgaatggacatgcatatgtaaaacttggactcaaaatagaaagtaattt
taagttaattaaatacagatggttccattactgtataatttactgaagtc
tatctggagaagaaatcccaataaattatataaccaaaattaatgtactt
cagttttccagactgcccctgaggcagaacacttgaaatccttcaacttc
ccatccattatccttacaacgtataaatgagaaaactcaatagttttcat
ctgagaatcacaagatgttctgaaaatctaattgactagaacccaggata
taagcgagaactattatgatcatttttgtgactggagaattagtgtaact
ggacatgggagccagaagagaagcagatttgacattgttgctaaaaagcc
ctcaaactttcattgaggtgacgctgcattattcctgaccaaggcctgtt
cagactttggaaactcttcattgcacttatatacaggaaatgagtctact
tgtgctcacccaggagctatgtctgagctagcagtcatgtagtagccagt
aatggatgggctgatgatccattagggaggagcttggctcacccatagca
atgccagacagggtagatggtggaagcattgagaagctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66347556_66348721
seq2: B6Ng01-083C19.b_45_1203

seq1  GAATTCTTCATAGATCTTTGTGGTTGGGCTAGAGCTAAGGTTAATTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATAGATCTTTGTGGTTGGGCTAGAGCTAAGGTTAATTAATG  50

seq1  CTAAGAGCATATAGGCCCACAAAGAAAATATTAAGTAATGAAGAAGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGCATATAGGCCCACAAAGAAAATATTAAGTAATGAAGAAGCCTT  100

seq1  TTTGCATTTTTAATAAGACGGTATCAAAATTAACAACCTCATTTCTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTTAATAAGACGGTATCAAAATTAACAACCTCATTTCTTAAT  150

seq1  ATGCTTATTTAAAAAAAATTTATCCACAGTTACTTATTGAGCTTAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATTTAAAAAAAATTTATCCACAGTTACTTATTGAGCTTAGAAAG  200

seq1  AATTCAAGACCTAGTGCTTAAAACAATAAAGCCATCTGACAACTAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGACCTAGTGCTTAAAACAATAAAGCCATCTGACAACTAGTTTG  250

seq1  TGGTATGATTTGAACACAATGTGAGAAAGTAGGCCCCTGTGGGCTAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGATTTGAACACAATGTGAGAAAGTAGGCCCCTGTGGGCTAGCCA  300

seq1  GGAAACACAAGTAATGCTAATGCTCTCCTTCTCAAGTTGGGAAATGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAAGTAATGCTAATGCTCTCCTTCTCAAGTTGGGAAATGCCAG  350

seq1  TCTTCCACTCCCATCTTTCACACAGGATTAATTATGAAACATGGCCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACTCCCATCTTTCACACAGGATTAATTATGAAACATGGCCTTGC  400

seq1  TCTCTATTTCTGTAGTGTGTAGCTGGCATGGTACTTGTCATTGTGCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTCTGTAGTGTGTAGCTGGCATGGTACTTGTCATTGTGCTAAT  450

seq1  GACGTATTCCAGTTGTTTTATTCAGGGCTAGCTCTGGGCAAGGGAAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTATTCCAGTTGTTTTATTCAGGGCTAGCTCTGGGCAAGGGAAGCTT  500

seq1  TCTGCTTGAGTATATTGGAAAAAAACACCTTCAGCATTTCTTTGAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTGAGTATATTGGAAAAAAACACCTTCAGCATTTCTTTGAAGATT  550

seq1  TGTGATTCTCCTATTTATTAGTCTTCTTGTGTTAGGCAAATTTATTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCTCCTATTTATTAGTCTTCTTGTGTTAGGCAAATTTATTTTTC  600

seq1  TGAGTTTTAACTTCATCATTTGTGATGAATAACAATTTCTTAATTATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTAACTTCATCATTTGTGATGAATAACAATTTCTTAATTATAAG  650

seq1  GCAAGCCTCATAAAGTTCTCCTACTCTCCCCTCTACTGCTTGGAAAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTCATAAAGTTCTCCTACTCTCCCCTCTACTGCTTGGAAAGACA  700

seq1  GAAATCCAAGTTGGTACCAAATTCCATCTGATGCAGCTCCATTCATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAGTTGGTACCAAATTCCATCTGATGCAGCTCCATTCATCTTT  750

seq1  GTGAACATATGCATGGACACTTGCATTTATACACAAGCTTCATGGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACATATGCATGGACACTTGCATTTATACACAAGCTTCATGGCCTGG  800

seq1  TTTATTTGTAAGTGTTTCAGCATCAGAATTATACAACATTTGGATCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTAAGTGTTTCAGCATCAGAATTATACAACATTTGGATCAGCA  850

seq1  AAGGAGTGGTCAGAAACTTTTATTGAGGTCCCACAGGTAAGGAAATAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGGTCAGAAACTTTTATTGAGGTCCCACAGGTAAGGAAATAGAT  900

seq1  ATCTTTTAACTCTTCTAGTTTAATATACTGTTCTTTTGAACTACTAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAACTCTTCTAGTTTAATATACTGTTCTTTTGAACTACTAAAAA  950

seq1  TAATTTAACACTATTAAGAAGTAACACAAAATCATCATTGGGAAATCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAACACTATTAAGAAGTAACACAAAATCATCATTGGGAAATCTTA  1000

seq1  GGTCCCCCAATTACTTGTAGTTAAAAAGATATTTTTTTGCAGAATCCATT  1050
      |   |||||||||||||||||| |||||||| ||||||||||||| ||||
seq2  G--TCCCCAATTACTTGTAGTTTAAAAGATA-TTTTTTGCAGAATTCATT  1047

seq1  T-AGATTCATGTGAATTTTTGAATTCTATGGCTTCTGATTCTATTTGTGA  1099
      | ||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TAAGATTCATGTGAA-TTTTGAATTCTATGGCTTCTGATTCTATTT-TGA  1095

seq1  GCTCAGACAATAGACTGTTGGTATCATCGGAATGGCTCATAATGAGAACA  1149
      ||||||||||||||||||||||||||||||||| |||| || ||  ||||
seq2  GCTCAGACAATAGACTGTTGGTATCATCGGAAT-GCTC-TATTGGAAACA  1143

seq1  TCCTGGCTGCATGATGA  1166
      |||| ||||||||||||
seq2  TCCT-GCTGCATGATGA  1159

seq1: chr1_66498133_66499230
seq2: B6Ng01-083C19.g_68_1157 (reverse)

seq1  AGAGCTTCTCCATGCTTCCACC-TCTACCCTGTCCTGGCAATTGCTATGG  49
      |||||||||| ||||||||||| |||||||||| ||||| ||||||||||
seq2  AGAGCTTCTCAATGCTTCCACCATCTACCCTGT-CTGGC-ATTGCTATGG  48

seq1  GTGAAGCCCAGCTCCCTCCCTCATTGGATCATCAGCCCATCCATTACTGG  99
      ||| |||| |||| ||||||| | ||||||||||||||||||||||||||
seq2  GTG-AGCCAAGCT-CCTCCCT-AATGGATCATCAGCCCATCCATTACTGG  95

seq1  CTACTACATGACTGCTAGCTCAGACATTAGCTCCTGGGTGAGCACAAGTA  149
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTACTACATGACTGCTAGCTCAGACA-TAGCTCCTGGGTGAGCACAAGTA  144

seq1  GACTCATTTCCTTGTATAATAAGTGCAAATGAAGAGTTTCCAAAAGTCTG  199
      ||||||||||| ||||| |||||||| |||||||||||||| ||||||||
seq2  GACTCATTTCC-TGTAT-ATAAGTGC-AATGAAGAGTTTCC-AAAGTCTG  190

seq1  AACAGGCCTTGGTCAGGAATAATGCAGCGTCACCTCAATG-AAGTTTGAG  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACAGGCCTTGGTCAGGAATAATGCAGCGTCACCTCAATGAAAGTTTGAG  240

seq1  GGCTTTATAGCAACAATGTCAAATCTGCTTCTCTTCTGGCTCCCATGTCC  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTAGCAACAATGTCAAATCTGCTTCTCTTCTGGCTCCCATGTCC  290

seq1  AGTTACACTAATTCTCCAGTCACAAAAATGATCATAATAGTTCTCGCTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACACTAATTCTCCAGTCACAAAAATGATCATAATAGTTCTCGCTTA  340

seq1  TATCCTGGGTTCTAGTCAATTAGATTTTCAGAACATCTTGTGATTCTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGGGTTCTAGTCAATTAGATTTTCAGAACATCTTGTGATTCTCAG  390

seq1  ATGAAAACTATTGAGTTTTCTCATTTATACGTTGTAAGGATAATGGATGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACTATTGAGTTTTCTCATTTATACGTTGTAAGGATAATGGATGG  440

seq1  GAAGTTGAAGGATTTCAAGTGTTCTGCCTCAGGGGCAGTCTGGAAAACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAGGATTTCAAGTGTTCTGCCTCAGGGGCAGTCTGGAAAACTG  490

seq1  AAGTACATTAATTTTGGTTATATAATTTATTGGGATTTCTTCTCCAGATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATTAATTTTGGTTATATAATTTATTGGGATTTCTTCTCCAGATA  540

seq1  GACTTCAGTAAATTATACAGTAATGGAACCATCTGTATTTAATTAACTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTAAATTATACAGTAATGGAACCATCTGTATTTAATTAACTTA  590

seq1  AAATTACTTTCTATTTTGAGTCCAAGTTTTACATATGCATGTCCATTCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTCTATTTTGAGTCCAAGTTTTACATATGCATGTCCATTCAT  640

seq1  ACACTACAAATAACCTATATTTCACCAAAAAAATTCTAACATTAAGTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACAAATAACCTATATTTCACCAAAAAAATTCTAACATTAAGTGAG  690

seq1  TTTTTAATTTCTTGGTTAGTGAAATATCTCTGTCAGCTCACTATGAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTCTTGGTTAGTGAAATATCTCTGTCAGCTCACTATGAAAAT  740

seq1  GGAGAGGATAAGTTTGCATGCTCTTAGCTCTTGTATAGAATTTATTATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGATAAGTTTGCATGCTCTTAGCTCTTGTATAGAATTTATTATTC  790

seq1  CTTCCTACAACCGTTCTCAGGTGCTAAGGTGCCAAGGCAATAGCACACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACAACCGTTCTCAGGTGCTAAGGTGCCAAGGCAATAGCACACTA  840

seq1  TTCAAGCAGCCTGTTCACAAACACACACTTTAAGAAAAGCAGGAAAAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAGCCTGTTCACAAACACACACTTTAAGAAAAGCAGGAAAAATC  890

seq1  CAGCTGGAAATGGGCAATTTACTTTTTCTTTGGAAGGAAATATTCCACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGAAATGGGCAATTTACTTTTTCTTTGGAAGGAAATATTCCACTA  940

seq1  ATATTAAAATAAAAATCAAAGGCCAGAAATTATAGCTTACTAGTATTAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAATAAAAATCAAAGGCCAGAAATTATAGCTTACTAGTATTAAC  990

seq1  AGAGCCAGGAATAGTAGCACATGACTGTAACCCCAGCACTAGGGCATTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGGAATAGTAGCACATGACTGTAACCCCAGCACTAGGGCATTTG  1040

seq1  AAACTCAGATTGCACCAGGCTCAAGCCAACATGGGTTAAATAGTGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGATTGCACCAGGCTCAAGCCAACATGGGTTAAATAGTGAATTC  1090