BAC Information

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BAC

Clone NameB6Ng01-083I07
Chromosome1 (Build37)
Map Location 117,196,322 - 117,197,471
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC227506
Downstream geneCntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083I07.bB6Ng01-083I07.g
ACCDH897760DH897761
length5281,143
definitionDH897760|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I07, 5' end.DH897761|Mus musculus domesticus DNA, BAC clone: B6Ng01-083I07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caagcccatggtcagttcaacactacctagggcattgatgaatgccagga
agaaaagtttgattttgcttgggtatttggcaagtcattggttggaggca
cctataaaaaataatactaaaaggaagcacacagatgctatgggatgcca
cagttccagaagactcagcttctgtgaaattattcgccacgggactgttt
tcaggtttctaaaactggagtggatatagcacaagagatagctatattag
ggtcctgtcagcaaattcttgctggagctatagaaagtacccaaggagct
agaggggtctgcaaccatataggagaaacaacaatatgaactaaccagta
accccagagtttgtgtttatagttgcatatgtaacagaggatggcttagt
cggccatcagtgggaggaaaggcccttggtcatgcgaagattatatgccc
cagtacaggagaatgctagggccaggaagcaggagtgggttggttgggga
gcagagcagggggagggtatagggtgtg

gaattcctgagagaagtaaaggaaagacttgagatattgttctcaggtgg
tagaaaaatagagttgagtcatacctatgaatctgccatcttattcatac
ctgaaaaaggaaattactttcatttgcaaaatataataatatgattatgt
atatagatattcataaaagtatatacatgtaaaggcagagaaaaattatt
tctatagcactcattgaaatataaaccaagagctagtataatggctcagc
aagaaaaagaatttcttaccaagtagatgatctaaattccagcccagaat
gtacattatggaaagttagaacccatccctgattgttgttcagatatctg
taagtgttcaaatattttgatgaacacacacacacacacacacacacaca
cacacacacacacaggagagagagaggttaaataaatattttaaaataag
aaataaatacaagccaatgttgcataacccttgttaataaaatatgttat
gcatgagatgaattaaatgtaaagtgaatgagaaaaaagttaaattaaat
taaattaaaaatagatacgaaaatatttcataagtactttgtattaaata
aagggaatttattattaccatggttatgtttatacaacaatcattaatat
acatcaaattttagccagaggaaataatgatgctatctgagactatgaca
atcattgatttgagtaaaccataaaaaagtaacatctaaattatgctaaa
atgaaactagatgtattatatgctaataataccttaaaagtttagtcctg
cttgtaaaataaaattttcaaagtattatcttgtaaacattgacatttta
aatgtgaatatatatttatatcattagcattataatatcttcaaaatttt
aaagcaaacattatgcagaagcctcaaaacatgaaatattctatgcataa
gaatagggctaatgaaccaatacagaaattaaaagtattgttccgtaagt
gaagagtacttgctgttccttcagaggactggagttccattccaagcaac
caaatcattagagctactaccacctgtacttcagttccagaagaatctct
tgctatcgtctagactctaggcttggaatatgtacatactcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117196322_117197471
seq2: B6Ng01-083I07.g_68_1210 (reverse)

seq1  GCGAGTTATGTACATATTCAATTGCCCTTAGAGTCTAGACGATAGCAAGA  50
      ||||| ||||||||||||| |  |||  ||||||||||||||||||||||
seq2  GCGAG-TATGTACATATTCCA-AGCC--TAGAGTCTAGACGATAGCAAGA  46

seq1  GATTC-TCTGGAACTGGAGTAACAGGTGGTAGTTAGCTCCCTAATGATTT  99
      ||||| |||||||||| ||| ||||||||||| |||||  ||||||||||
seq2  GATTCTTCTGGAACTGAAGT-ACAGGTGGTAG-TAGCT--CTAATGATTT  92

seq1  GGTTGCTTGGAATGGAACTCCAGTCCTCTGAAGGAACAGCAAGTACTCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTTGGAATGGAACTCCAGTCCTCTGAAGGAACAGCAAGTACTCTT  142

seq1  CACTTACGGAACAATACTTTTAATTTCTGTATTGGTTCATTAGCCCTATT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACGGAACAATACTTTTAATTTCTGTATTGGTTCATTAGCCCTATT  192

seq1  CTTATGCATAGAATATTTCATGTTTTGAGGCTTCTGCATAATGTTTGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCATAGAATATTTCATGTTTTGAGGCTTCTGCATAATGTTTGCTT  242

seq1  TAAAATTTTGAAGATATTATAATGCTAATGATATAATTATATATTCACAT  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAAAATTTTGAAGATATTATAATGCTAATGATATAAATATATATTCACAT  292

seq1  TTAAAATGTCAATGTTTACAAGATAATACTTTGAAAATTTTATTTTACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTCAATGTTTACAAGATAATACTTTGAAAATTTTATTTTACAA  342

seq1  GCAGGACTAAACTTTTAAGGTATTATTAGCATATAATACATCTAGTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACTAAACTTTTAAGGTATTATTAGCATATAATACATCTAGTTTCA  392

seq1  TTTTAGCATAATTTAGATGTTACTTTTTTATGGTTTACTCAAATCAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCATAATTTAGATGTTACTTTTTTATGGTTTACTCAAATCAATGA  442

seq1  TTGTCATAGTCTCAGATAGCATCATTATTTCCTCTGGCTAAAATTTGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATAGTCTCAGATAGCATCATTATTTCCTCTGGCTAAAATTTGATG  492

seq1  TATATTAATGATTGTTGTATAAACATAACCATGGTAATAATAAATTCCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAATGATTGTTGTATAAACATAACCATGGTAATAATAAATTCCCT  542

seq1  TTATTTAATACAAAGTACTTATGAAATATTTTCGTATCTATTTTTAATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATACAAAGTACTTATGAAATATTTTCGTATCTATTTTTAATTT  592

seq1  AATTTAATTTAACTTTTTTCTCATTCACTTTACATTTAATTCATCTCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTTAACTTTTTTCTCATTCACTTTACATTTAATTCATCTCATG  642

seq1  CATAACATATTTTATTAACAAGGGTTATGCAACATTGGCTTGTATTTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATATTTTATTAACAAGGGTTATGCAACATTGGCTTGTATTTATT  692

seq1  TCTTATTTTAAAATATTTATTTAACCTCTCTCTCTCCTGTGTGTGTGTGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTAAAATATTTATTTAACCTCTCTCTCTCCTGTGTGTGTGTGT  742

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATCAAAATATTTGAACACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATCAAAATATTTGAACACTT  792

seq1  ACAGATATCTGAACAACAATCAGGGATGGGTTCTAACTTTCCATAATGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATCTGAACAACAATCAGGGATGGGTTCTAACTTTCCATAATGTA  842

seq1  CATTCTGGGCTGGAATTTAGATCATCTACTTGGTAAGAAATTCTTTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGGCTGGAATTTAGATCATCTACTTGGTAAGAAATTCTTTTTCT  892

seq1  TGCTGAGCCATTATACTAGCTCTTGGTTTATATTTCAATGAGTGCTATAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCATTATACTAGCTCTTGGTTTATATTTCAATGAGTGCTATAG  942

seq1  AAATAATTTTTCTCTGCCTTTACATGTATATACTTTTATGAATATCTATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTTCTCTGCCTTTACATGTATATACTTTTATGAATATCTATA  992

seq1  TACATAATCATATTATTATATTTTGCAAATGAAAGTAATTTCCTTTTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATCATATTATTATATTTTGCAAATGAAAGTAATTTCCTTTTTCA  1042

seq1  GGTATGAATAAGATGGCAGATTCATAGGTATGACTCAACTCTATTTTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAATAAGATGGCAGATTCATAGGTATGACTCAACTCTATTTTTCT  1092

seq1  ACCACCTGAGAACAATATCTCAAGTCTTTCCTTTACTTCTCTCAGGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGAGAACAATATCTCAAGTCTTTCCTTTACTTCTCTCAGGAATT  1142

seq1  C  1150
      |
seq2  C  1143


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