BAC Information

Click to search

BAC

Clone NameB6Ng01-083K19
Chromosome1 (Build37)
Map Location 49,290,906 - 49,291,707
singlet/doubletsinglet
Overlap geneLOC666924
Upstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik
Downstream geneC230029F24Rik, LOC627430, LOC100041981, EG666962, EG666970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083K19.bB6Ng01-083K19.g
ACCDH897869DH897870
length1,2061,060
definitionDH897869|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K19, 5' end.DH897870|Mus musculus domesticus DNA, BAC clone: B6Ng01-083K19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaagacatttatgatgaatgagtgttcgattttg
tgaaatgtttctcagcatctaatgagatgatcatgtggtttttgtcttta
aatttttttatttggtggattacattaatgatttttgtatactacagcat
ccctgcatccctggaatgaaacctacttgatcatgatggatgattgtttt
gatatgttcttggattcatttattgagaattgtattgagtatttttgcat
cgatattcataagggaatttggtctaaagttctctatctttgttgggtct
ttatatgctttaggtatcaaagtaattgtggcttcatagaatgaattggg
tagagtaccttctgtttctttttttttttatatctttttattatgtattt
tcctcaattacatttccaatgctatcccaaaagtccctcataccctcccc
ccccactcccctacccaccgattcccactttttggccctggcgttcccct
gtactggggcatataaagtgtgtgtgtccaatgggcctctttccagtgat
ggccgactaggccatcttttgatacatatgcagctagagtcaagtgctcc
ggggtactggttagttcataatattgttgcacctacagggttgcagatgt
ctttagctccttggatactttctctagctcctccattgggggccctgtga
tccatccaatagctgactgtgagcatccacttatgtgtttgctaggccct
ggcctagtctcacaagagacagctatatcagggtcctttcagcaaacgct
tgctagtgtatgcaatggtgttagcgtttggatgctgattatgggatgga
tccctggatatggcagtctctagatggttcatcctttcgtctcagctcca
aactttgtctctgtaactccttccatgggtgattgtttcattctaagaag
gggcaaattgttttgtggaatagtttgaggagaacaagaattaggtcttc
ttgaaggtctgatagaactcttgcactaatcatctggtctgggctttttt
ttttttttttttggtgggaacaataatgactgctcctgttctaaggtagg
gctgttgaacataatcgaccggatactggacctggtactgtctgaattgg
ccattatcccaggtttccgtttgtggaatagccttgaaaaagacgcaggg
aattcg
gaattctataaagactaaaatttgtctttatttcttccttgagtagagag
ttgtttagcttccatgagtaagtggattttctgttgtttttgttgatagt
gacatccagaggtgatctgatagtatgcatgtgattatttcaattttctt
atatctgttgaagcttttcttgtgaccgtatatatggccaattttggaga
aggtatcagaatgtgctctagaaaaaggtatattcttttgttttaggatg
aaatgttctttaaaaatctaataaatctattttgttcataaattccatta
ggttcactgtgtctctgcttagtttctgtttccatgatctgtccattaat
gagagtggagtactgaggtccattactattgtgtgaggttcaacatttgt
tatgatattcagcaatgttacttttacaaatgtgggtggccttggattta
gggcatagattttcacaattgagggttcattttgagagattcttttcctt
tgatcagtatgcagtgtccttctccaatttttttgataacattttttgaa
agtctattttttgaatattaaaatagcctctccaccttgtttcttgagac
aattgcctggaaaactttttttccagtcctttactctgaggttgtttctg
tctttgtcattgaggtgtgtctcttgtatgcaataaaattctggatcctg
tttatatccagtccattagcttgcctctttttactggggagttgagtcca
ctgatgttgagaaattaatttttttattataaggactgcaaaaataaaag
aatataattatttttccatcattgttttcatcatggaaatggctttcaga
gaatactggtcaaatgaatactattgcttcctacttttcaagtggtctat
acaatactgagagttggagtttgaggttttggggtccctattgtctgtat
tgctactcttgtctcctgcttatatagggttgaaatttgatcattggtgt
ctgcactataaaataaatggtgcactaagaagtcttctatatcaatgaat
gtttacatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_49290906_49291707
seq2: B6Ng01-083K19.g_333_1126

seq1  TCTAATAAATCTATTTTGTTCATAAATTCCATTAGGTTCACTGTGTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAATCTATTTTGTTCATAAATTCCATTAGGTTCACTGTGTCTCT  50

seq1  GCTTAGTTTCTGTTTCCATGATCTGTCCATTAATGAGAGTGGAGTACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTTCTGTTTCCATGATCTGTCCATTAATGAGAGTGGAGTACTGA  100

seq1  GGTCCATTACTATTGTGTGAGGTTCAACATTTGTTATGATATTCAGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTACTATTGTGTGAGGTTCAACATTTGTTATGATATTCAGCAAT  150

seq1  GTTACTTTTACAAATGTGGGTGGCCTTGGATTTAGGGCATAGATTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTTACAAATGTGGGTGGCCTTGGATTTAGGGCATAGATTTTCAC  200

seq1  AATTGAGGGTTCATTTTGAGAGATTCTTTTCCTTTGATCAGTATGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGGTTCATTTTGAGAGATTCTTTTCCTTTGATCAGTATGCAGTG  250

seq1  TCCTTCTCCAATTTTTTTGATAACATTTTTTGAAAGTCTATTTTTTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCAATTTTTTTGATAACATTTTTTGAAAGTCTATTTTTTGAAT  300

seq1  ATTAAAATAGCCTCTCCACCTTGTTTCTTGAGACAATTGCCTGGAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATAGCCTCTCCACCTTGTTTCTTGAGACAATTGCCTGGAAAACT  350

seq1  TTTTTTCCAGTCCTTTACTCTGAGGTTGTTTCTGTCTTTGTCATTGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCAGTCCTTTACTCTGAGGTTGTTTCTGTCTTTGTCATTGAGGT  400

seq1  GTGTCTCTTGTATGCAATAAAATTCTGGATCCTGTTTATATCCAGTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTTGTATGCAATAAAATTCTGGATCCTGTTTATATCCAGTCCAT  450

seq1  TAGCTTGCCTCTTTTTACTGGGGAGTTGAGTCCACTGATGTTGAGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCCTCTTTTTACTGGGGAGTTGAGTCCACTGATGTTGAGAAATT  500

seq1  AATTTTTTTATTATAAGGACTGCAAAAATAAAAGAATATAATTA-TTTTC  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATTTTTTTATTATAAGGACTGCAAAAATAAAAGAATATAATTATTTTTC  550

seq1  CATCATTGTTTTCATCATGGAAATGGCTTTCAGAGAATACTGGTCAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTGTTTTCATCATGGAAATGGCTTTCAGAGAATACTGGTCAAATG  600

seq1  AATACTATTGCTTCCTACTTTTCAAGTGGTCTATACAATACTGAGAGTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATTGCTTCCTACTTTTCAAGTGGTCTATACAATACTGAGAGTTG  650

seq1  GAGTTTGAGGTTTTGGGGTCCCTATTGTCTGTAATTGCTACTCTTGTTCT  699
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GAGTTTGAGGTTTTGGGGTCCCTATTGTCTGT-ATTGCTACTCTTG-TCT  698

seq1  CCTGCTTATATAGGGTTGAAATTTGATCATTTGGTGTCCTGCACCTATAA  749
      ||||||||||||||||||||||||||||| ||||||| ||||| ||||||
seq2  CCTGCTTATATAGGGTTGAAATTTGATCA-TTGGTGT-CTGCA-CTATAA  745

seq1  AATAAAT-GTGCACCTTAAG-AGTCTTCTATTATTCAAATGAAATGTTTA  797
      ||||||| ||||||  |||| ||||||||| |||   |||| ||||||||
seq2  AATAAATGGTGCAC--TAAGAAGTCTTCTA-TAT--CAATG-AATGTTTA  789

seq1  CATTA  802
      |||||
seq2  CATTA  794