BAC Information

Click to search

BAC

Clone NameB6Ng01-083N04
Chromosome1 (Build37)15 (Build37)
Map Location 85,245,200 - 85,246,37838,811,180 - 38,812,137
singlet/doubletsingletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083N04.bB6Ng01-083N04.g
ACCDH897977DH897978
length1,1661,099
definitionDH897977|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N04, 5' end.DH897978|Mus musculus domesticus DNA, BAC clone: B6Ng01-083N04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,245,200 - 85,246,378)(38,811,180 - 38,812,137)
sequence
gaattctttgaatcagttcttgggaaattacgctggggaacagacaatgg
aagagcctaaggatgacttctgggcatgagaacccaagaatttgtgaggg
gaaaacaaggatcagacatgaggagataaagacttgagcagctggagtat
tggatcgtttgcctgctatcccaccacttgaaagcgtccaggaccatgga
aagaactgaggtgggagaaaacggacttggaaggcttccagaagcaatgg
ggaaaccaatggatgacagtatcagaaaggtcacagtgtttttatcatta
ttatcattatcataattatgatatttatcagtatgtggaggttgggcata
tgttccatggaacacatggagaggccaagaaacaacatgtgagttgggtc
tgttcttccaccatatgggttgcagggatcaaattcaggtcaccagtgct
tggtggcaaggacctcgaggtactgagccatttgacagaccaatgacaca
ttttaattgactggtgacatctcataatagaagatgggagagcgccaaag
gcgaggtgggaagaggttagagaagcacagccctgaaaaagaagcttccc
caggcaggacaagtgaggagaaactgaaaaagtgcatcctgctggcaaca
caggaagtgacttggctgccagtgaccctcggatggcaagtgaggagtga
aaccccagctcttggccctcagagctgcatttcaaaatgtcccagcaata
ggaacaggaaccacacccaagttctgcagcaacattctacaccagaactg
attgactgtgcctgctgcagggagagtcctctagaggtagggagccagaa
agctgaagctacagggagccagtgggaacacagagctgttctctacctga
gacctgctgattttatgttcatttgacacgtgccagcaccttggtctaaa
gtcactttgttttcacactctcagttgacccatgcttctctctcgagtgt
ctgggcccatctgagctccctcttgtgatttctctcctctcaagaggcaa
actggagtcgtaaagtagtcactctgctggatggacaaattctgcatcta
cgatgctttagtctgcagtctcgaatagagctgcctcctggttaaagaaa
ctcatccttcatactg
gaattctgtgagatgcctcttgttctcaagaccatggtgaaattgctgaa
gccctgtgttgcctcgctgtcagtgtcacaccttagcaagcagctctgcc
tggattctctgcacttgcctttggttggttggaggtgtgtgggcggggtt
ggggaaagttatcagtggttcttaaactttaagcatgcatcaaagttgcc
tgaagggcttcttaaaacacacaggtcactggggtcccaccccaggcttc
tgactcagaaagcgcagggaggggctgagaacacgcagtctagcaagttc
ccagctgctgctgctgttgaggtctggacctggtgctactgatttagatt
gacagcatgaattgacagcatgaaaaggcagtaaaggcaaagcagccatc
agacttccacacacatctaaatgttttattctggttttaaaaaccaatgc
aaggctagtgagatgggccagtgagtaaaggcacttgttgccgagtctga
caacctaagctcaatcctcattcccataagggtgaaggaaagaacagact
cccttcagctgtcctcttacctcccatgtattccataacacacacacact
aaacaaaacattttttaaagcaacacaggtatatagtgaaaaataaaaac
agttgtaagaaagaatattttagtttaaatctcaacaccaaaaaataacc
actataaacatgtggcatatttatttttcatgtttcttttgctgggtatg
catacatatgccagatatgtgcctagtatatatgagccgtgtataatcat
gctatatatataaatttttgcatattctccctttagggatagtatcttga
atatttccaatattattcataaattagccagcatagagtacattaaggat
caggttattttcctgagctactaaagaattaagatccttggatttcttga
agatgatagaacctgccagagctccacttgcagacaagagctgggtgtat
atgagattttgttcttaaaaaaacacagaatattctaagaatatattttt
ggtttatcatagtatggaatggggctacttcagattctccacagcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_85245200_85246378
seq2: B6Ng01-083N04.b_44_1209

seq1  GAATTCTTTGAATCAGTTCTTGGGAAATTAAGCTAGGGAACAGACAATGG  50
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  GAATTCTTTGAATCAGTTCTTGGGAAATTACGCTGGGGAACAGACAATGG  50

seq1  TAGAGCCTAAGGATGACTTCTGGGCATGAGAACCCAAGAATTTGTGAATG  100
       ||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  AAGAGCCTAAGGATGACTTCTGGGCATGAGAACCCAAGAATTTGTGAGGG  100

seq1  GAAAACAAGAACCAGACGTGAGGAGATAAAGACTTGAGCAGCTGGAGTAT  150
      ||||||||| | ||||| ||||||||||||||||||||||||||||||||
seq2  GAAAACAAGGATCAGACATGAGGAGATAAAGACTTGAGCAGCTGGAGTAT  150

seq1  TGGATCGTTTGCCTGCTATCCCAGCACTTGAAAGCATCCAGGACCATGGA  200
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TGGATCGTTTGCCTGCTATCCCACCACTTGAAAGCGTCCAGGACCATGGA  200

seq1  AAGAACTGAGGTGGGAGAAAACGGACTTGGAAGGCTTCCAGGAAGCAATG  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGAACTGAGGTGGGAGAAAACGGACTTGGAAGGCTTCCA-GAAGCAATG  249

seq1  GGGAAACCAATGGATGACAGTATCAGAAAGGTCACAGTGTTTTTATCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCAATGGATGACAGTATCAGAAAGGTCACAGTGTTTTTATCATT  299

seq1  ATTATCATTATCATAATTATGATATTTATCAGTATGTGGAGGTTGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTATCATAATTATGATATTTATCAGTATGTGGAGGTTGGGCAT  349

seq1  ATGTTCCATGGTACACATGGAGAGGCCAAGAAACAACTTGTGAGTTGGGT  400
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  ATGTTCCATGGAACACATGGAGAGGCCAAGAAACAACATGTGAGTTGGGT  399

seq1  CTGTTCTTCCACCATATGGGTTGCAGGGATCAAATTCAGGTCACCAG-GC  449
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTTCTTCCACCATATGGGTTGCAGGGATCAAATTCAGGTCACCAGTGC  449

seq1  TTGGTGGCAAGGACCTCGAGGTAGTGAGCCATTTGACAGACCAATGACAC  499
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGGTGGCAAGGACCTCGAGGTACTGAGCCATTTGACAGACCAATGACAC  499

seq1  ATTTTAATTGACTGGTGACATCTCAGAGTAGAAGATGGGAGAGCGCCAAA  549
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  ATTTTAATTGACTGGTGACATCTCATAATAGAAGATGGGAGAGCGCCAAA  549

seq1  GGCGAGGTGGGAAGAGGTTAGAGAAGCACAGCCCTGAAGAGGAAGCTTCC  599
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  GGCGAGGTGGGAAGAGGTTAGAGAAGCACAGCCCTGAAAAAGAAGCTTCC  599

seq1  CCAGGCAGGACAAGTGAGGAGAAACTGAAAAAGTGCATCCTGCTGGCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGACAAGTGAGGAGAAACTGAAAAAGTGCATCCTGCTGGCAAC  649

seq1  ACAGGAAGTGACTTGGCTGCCAGTGACCCTCAGATGGCAAGTGAGGAGTG  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACAGGAAGTGACTTGGCTGCCAGTGACCCTCGGATGGCAAGTGAGGAGTG  699

seq1  AAACCCCAGCTCTTGGCCCTCAGAGCTGCATTTCAAAATGCCCAAGCAAA  749
      |||||||||||||||||||||||||||||||||||||||| || ||||| 
seq2  AAACCCCAGCTCTTGGCCCTCAGAGCTGCATTTCAAAATGTCCCAGCAAT  749

seq1  AGGAACAGGAACCACACCCAAGTTCTGCAGCAACAGTCTACACCAGAACT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGAACAGGAACCACACCCAAGTTCTGCAGCAACATTCTACACCAGAACT  799

seq1  GATTGACTGTGCCTGCTGCAAGGGAGAGTCCTCTAGAGGTAGGGGAGCCA  849
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GATTGACTGTGCCTGCTGC-AGGGAGAGTCCTCTAGAGGTA-GGGAGCCA  847

seq1  GAAAGCTGAAGCTACAGGGAGCCAGTGGGAACAACAGAGGCTGTTCTCTA  899
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GAAAGCTGAAGCTACAGGGAGCCAGTGGGAAC-ACAGA-GCTGTTCTCTA  895

seq1  CCTGAGACCTGCTGATTTTATGTTCATTCGACAACGTGCCAGCACCTTGG  949
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  CCTGAGACCTGCTGATTTTATGTTCATTTGAC-ACGTGCCAGCACCTTGG  944

seq1  TTCTAAAAGTCCACTTTGTTTTCACACTCTCAGTTGACACATGCTTCTCT  999
       ||| ||||| ||||||||||||||||||||||||||| |||||||||||
seq2  -TCT-AAAGT-CACTTTGTTTTCACACTCTCAGTTGACCCATGCTTCTCT  991

seq1  CTCGAGTGTCTGGGCCCAACCTGGGCTCCC-CTTGTGATTTCTCTACTCT  1048
      ||||||||||||||||| | ||| |||||| |||||||||||||| ||||
seq2  CTCGAGTGTCTGGGCCC-ATCTGAGCTCCCTCTTGTGATTTCTCTCCTCT  1040

seq1  TCAAAGAAGAAAACTGAAGTAGTAGAGTAGTCACTCTGCTGAAT-GACAA  1097
         |||| | |||||| ||| ||| |||||||||||||||| || |||||
seq2  --CAAGAGGCAAACTGGAGTCGTAAAGTAGTCACTCTGCTGGATGGACAA  1088

seq1  ATTCTGCATTTTTACCATTGCATATGTCTGCAAGCCTCAGACAGAGCTGG  1147
      ||||||||  | ||| | ||| |  |||||| || |||  | ||||||| 
seq2  ATTCTGCA--TCTACGA-TGCTTTAGTCTGC-AGTCTCGAATAGAGCTGC  1134

seq1  CTCCTGTCTAAAGAAACTCATCCTTCATACTG  1179
      ||||||  ||||||||||||||||||||||||
seq2  CTCCTGGTTAAAGAAACTCATCCTTCATACTG  1166

seq1: chr15_38811180_38812137
seq2: B6Ng01-083N04.g_221_1166

seq1  GAAAGTTATCAGTGGTTCTTAAACTTTAAGCATGCATCAAAGTTGCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTATCAGTGGTTCTTAAACTTTAAGCATGCATCAAAGTTGCCTGA  50

seq1  AGGGCTTCTTAAAACACACAGGTCACTGGGGTCCCACCCCAGGCTTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCTTAAAACACACAGGTCACTGGGGTCCCACCCCAGGCTTCTGA  100

seq1  CTCAGAAAGCGCAGGGAGGGGCTGAGAACACGCAGTCTAGCAAGTTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGCGCAGGGAGGGGCTGAGAACACGCAGTCTAGCAAGTTCCCA  150

seq1  GCTGCTGCTGCTGTTGAGGTCTGGACCTGGTGCTACTGATTTAGATTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTGCTGTTGAGGTCTGGACCTGGTGCTACTGATTTAGATTGAC  200

seq1  AGCATGAATTGACAGCATGAAAAGGCAGTAAAGGCAAAGCAGCCATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAATTGACAGCATGAAAAGGCAGTAAAGGCAAAGCAGCCATCAGA  250

seq1  CTTCCACACACATCTAAATGTTTTATTCTGGTTTTAAAAACCAATGCAGG  300
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTTCCACACACATCTAAATGTTTTATTCTGGTTTTAAAAACCAATGCAAG  300

seq1  GCTAGTGAGATGGGCCAGTGAGTAAAGGCACTTGTTGCCGAGTCTGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGAGATGGGCCAGTGAGTAAAGGCACTTGTTGCCGAGTCTGACAA  350

seq1  CCTAAGCTCAATCCTCATTCCCATAAGGGTGAAGGAAAGAACAGACTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTCAATCCTCATTCCCATAAGGGTGAAGGAAAGAACAGACTCCC  400

seq1  TTCAGCTGTCCTCTTACCTCCCATGTATTCCATAACACACACACACTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTCCTCTTACCTCCCATGTATTCCATAACACACACACACTAAA  450

seq1  CAAAACATTTTTTAAAGCAACACAGGTATATAGTGAAAAATAAAAACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATTTTTTAAAGCAACACAGGTATATAGTGAAAAATAAAAACAGT  500

seq1  TGTAAGAAAGAATATTTTAGTTTAAATCTCAACACCAAAAAATAACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGAAAGAATATTTTAGTTTAAATCTCAACACCAAAAAATAACCACT  550

seq1  ATAAACATGTGGCATATTTA-TTTTCATGTTTCTTTTGCTGGGTATGCAT  599
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAACATGTGGCATATTTATTTTTCATGTTTCTTTTGCTGGGTATGCAT  600

seq1  ACATATGCCAGATATGTGCCTAGTATATATGAGCCGTGTATAATCATGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATATGCCAGATATGTGCCTAGTATATATGAGCCGTGTATAATCATGCT  650

seq1  ATATATAT-AATTTTTGCATATTCTCCCTTTAGGTATAGTATCTTGAATA  698
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ATATATATAAATTTTTGCATATTCTCCCTTTAGGGATAGTATCTTGAATA  700

seq1  TTTCCAATATTATTCATAAATTAGCCAGCATAGAGTACATTAAGGATCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATATTATTCATAAATTAGCCAGCATAGAGTACATTAAGGATCAG  750

seq1  GTTATTTTCCTGAGCTACTAAAGAATTAAGATCCTTGGATTTCTTGAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTCCTGAGCTACTAAAGAATTAAGATCCTTGGATTTCTTGAAGA  800

seq1  TGGATAGAACCTGCCAGAGCT-CAC-TGCAGGAACAAGGAAGCTGGGGTG  846
      | ||||||||||||||||||| ||| |||||  |||||  |||| |||||
seq2  T-GATAGAACCTGCCAGAGCTCCACTTGCAG--ACAAG--AGCT-GGGTG  844

seq1  TATATTGAGAATTTTGGTTTCTTTAAAAAAACACAGAAATATTCTAAGAA  896
      |||| |||| ||||||  ||| |||||||||||||| |||||||||||||
seq2  TATA-TGAG-ATTTTG--TTC-TTAAAAAAACACAG-AATATTCTAAGAA  888

seq1  TATATTTTGGTTTTAATCATAGGTATGGGATATGGGGCTACTTCAGATTC  946
      |||||||| | ||| |||||| ||||||   |||||||||||||||||||
seq2  TATATTTTTGGTTT-ATCATA-GTATGG--AATGGGGCTACTTCAGATTC  934

seq1  TCCACAGCATCT  958
      ||||||||||||
seq2  TCCACAGCATCT  946