BAC Information

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BAC

Clone NameB6Ng01-084E20
Chromosome1 (Build37)
Map Location 92,396,741 - 92,397,887
singlet/doubletsinglet
Overlap genenone
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084E20.bB6Ng01-084E20.g
ACCDH898299DH898300
length1,1411,224
definitionDH898299|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E20, 5' end.DH898300|Mus musculus domesticus DNA, BAC clone: B6Ng01-084E20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgcctggcttattacatggagggcaggggaggactggaatctag
ggacttcagacctgcccgtgggatacatccaggaaactccttttcctcac
gtggcctgagttcacaggtctgtagcattcattcctggatgcccaggtac
agccaagctccaaatgcttctctcccctcaaaggttcagtgtacatctgg
gggaaatactcctgctcagttaaataggctttgacatcctcctggtgtgg
ctctccaaagtatcatgatctagagcagcggttctcaactttcctcatgc
cttgatcctttaatatcattcctcacgttacggcaacccccagctataaa
attattttcgttactacttcacaactgtcattttgttactgttatgaatt
gtaatgtgaatatctgatagccaagatatctgatatgtggcccctgtgaa
aggatcatttgacctgccaatttggggatcataacccacaggttgaaaac
ctgtggtctagatgggtttcaatgtgacagagttaaggtatctttgagag
gagaacctgagcccttggagacctcaccctcaaaggggttaatgatggtc
tccaagggcaagtggtgtccctcattcaggaagccttttctgcttttcca
agtgcctgagtgaagaccacccacttactagtgccctcagaaagagcggt
gaataaagtaatctagacaacagaagtttattttctaatagttctggaga
attctgtaacgaggtgtcaggtaggctaatcttgaagacagtctttttcc
tgtgtcctaacagagtgtccttctgggttctgtgttccaattccttccta
gtgtaagagcataggccatattggatttgggctcaccctaagacttcgtt
ttgtcttaattgcttctgcaaagaagtccaattgtcattctgaggagtgg
ggttaagatcgaaacatatgctgagggttgggtgggagatacagctcagc
ccatggccggttatggggtcagaggtgaccttctttgtcactggctctat
gctacacagaaatcccacatgggatgggatgggctgtgggaacaaacttt
atcccagcactcagaggcagatgagcagatctctttcagtt
gaattctgttagaggctagaaaaatagcctgggagccaacgggcggtcta
cacagctacaaaatgagatcgacatgggattccctttgactcgccccagt
tgaaactacaacatggctaaaggtagggagagcttaaaaatctatcacca
ggctccggtctccaaggtgcctcaaaacgggcccactaatttggctaagg
taagaggtaatgcaggggccgatcgaaccttcctctgtgttccttgaaag
gcttatggaagccttcaggtggttcactccctttgatcttacctcggaag
cccaaaaggcctcagtggccctggcctttcataaggcagtcagctcccga
tatcagaaagaaacttcagagattaaaaggtgtattacaagaaagagaca
gttatgcgatctagtaaaagaggcagagaaagtgtgtgtgtgagaaagag
agaggcaggaggcaaaagaaagagaaaacaggagggatagtagacaaaaa
agaaatttgccacagtggtaggagaaaaagaaaagacaggatctagacag
gaaacctgggcaactgaagaccgagcctcagctaaagaggctcagctgtg
tcagactgaagtgacttatttgagatacacccttcgaggtggaaagcagt
ggctaaaagaagccagaaaaagactgtaactcagatccccaccccaacta
caccaaggcaagcaagaaaattcttaggtactgctggcttctacagactc
tagatacctgggttggcgaccttagctgcccagttgtaccccctaaccaa
ggaaggtaggtgtttgtgtggaccccagatcaccaaaaagcctttaaaga
gataaaaaggccctactgatagccagccttatgcctgacctaaccaagcc
tttcactctttatgtaaagagagagcaagggtcaccagaagagtccttac
tcagactttgggactttgaaagccagttgacttaccttatccagagttac
accctgttgcagcggtggttttcttgcctgaagctatgctgccatatctg
cttgtcagatgctgatagcttcactcttgggacagcaaatactttagttg
catcccacactcttgaaagcaattatcacgctcctgtggaaacactcaga
gccttttgtgtctatgacgaacttcgcttcatcacctgctgtccactgac
gtgtgaaacatgcactcagtcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92396741_92397887
seq2: B6Ng01-084E20.b_48_1188

seq1  GAATTCTGCCTGGCTTATTACATGGAGGGCAGGGGAGGACTGGAATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGGCTTATTACATGGAGGGCAGGGGAGGACTGGAATCTAG  50

seq1  GGACTTCAGACCTGCCCGTGGGATACATCCAGGAAACTCCTTTTCCTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTCAGACCTGCCCGTGGGATACATCCAGGAAACTCCTTTTCCTCAC  100

seq1  GTGGCCTGAGTTCACAGGTCTGTAGCATTCATTCCTGGATGCCCAGGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTGAGTTCACAGGTCTGTAGCATTCATTCCTGGATGCCCAGGTAC  150

seq1  AGCCAAGCTCCAAATGCTTCTCTCCCCTCAAAGGTTCAGTGTACATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCTCCAAATGCTTCTCTCCCCTCAAAGGTTCAGTGTACATCTGG  200

seq1  GGGAAATACTCCTGCTCAGTTAAATAGGCTTTGACATCCTCCTGGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATACTCCTGCTCAGTTAAATAGGCTTTGACATCCTCCTGGTGTGG  250

seq1  CTCTCCAAAGTATCATGATCTAGAGCAGCGGTTCTCAACTTTCCTCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAAGTATCATGATCTAGAGCAGCGGTTCTCAACTTTCCTCATGC  300

seq1  CTTGATCCTTTAATATCATTCCTCACGTTACGGCAACCCCCAGCTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCCTTTAATATCATTCCTCACGTTACGGCAACCCCCAGCTATAAA  350

seq1  ATTATTTTCGTTACTACTTCACAACTGTCATTTTGTTACTGTTATGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCGTTACTACTTCACAACTGTCATTTTGTTACTGTTATGAATT  400

seq1  GTAATGTGAATATCTGATAGCCAAGATATCTGATATGTGGCCCCTGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTGAATATCTGATAGCCAAGATATCTGATATGTGGCCCCTGTGAA  450

seq1  AGGATCATTTGACCTGCCAATTTGGGGATCATAACCCACAGGTTGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCATTTGACCTGCCAATTTGGGGATCATAACCCACAGGTTGAAAAC  500

seq1  CTGTGGTCTAGATGGGTTTCAATGTGACAGAGTTAAGGTATCTTTGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTCTAGATGGGTTTCAATGTGACAGAGTTAAGGTATCTTTGAGAG  550

seq1  GAGAACCTGAGCCCTTGGAGACCTCACCCTCAAAGGGGTTAATGATGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCTGAGCCCTTGGAGACCTCACCCTCAAAGGGGTTAATGATGGTC  600

seq1  TCCAAGGGCAAGTGGTGTCCCTCATTCAGGAAGCCTTTTCTGCTTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGCAAGTGGTGTCCCTCATTCAGGAAGCCTTTTCTGCTTTTCCA  650

seq1  AGTGCCTGAGTGAAGACCACCCACTTACTAGTGCCCTCAGAAAGAGCGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGAGTGAAGACCACCCACTTACTAGTGCCCTCAGAAAGAGCGGT  700

seq1  GAATAAAGTAATCTAGACAACAGAAGTTTATTTTCTAATAGTTCTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGTAATCTAGACAACAGAAGTTTATTTTCTAATAGTTCTGGAGA  750

seq1  ATTCTGTAACGAGGTGTCAGGTAGGCTAATCTTGAAGACAGTCTTTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAACGAGGTGTCAGGTAGGCTAATCTTGAAGACAGTCTTTTTCC  800

seq1  TGTGTCCTAACAGAGTGTCCTTCTGGGTTCTGTGTTCCAATTCCTTCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTAACAGAGTGTCCTTCTGGGTTCTGTGTTCCAATTCCTTCCTA  850

seq1  GTGTAAGAGCATAGGCCATATTGGATTTGGGCTCACCCTAAGACTTCGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGAGCATAGGCCATATTGGATTTGGGCTCACCCTAAGACTTCGTT  900

seq1  TTGTCTTAATTGCTTCTGCAAAGAAGTCCAATTGTCATTCTGAGGAGGTG  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGTCTTAATTGCTTCTGCAAAGAAGTCCAATTGTCATTCTGAGGA-GTG  949

seq1  GGGTTAAGATCGAAACATATGCTGAGGGTTGGGTGGGAGATACAGCTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAGATCGAAACATATGCTGAGGGTTGGGTGGGAGATACAGCTCAG  999

seq1  CCCATGGCCGGTTATGGGGTCAGAGGTGACCTTCTTTGTCACTGGCTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCCATGGCCGGTTATGGGGTCAGAGGTGACCTTCTTTGTCACTGGCTCT-  1048

seq1  ATGCTACACAGAAATCCCACATGGGAT-GGATGGGCTTGGTGGGACACAC  1099
      ||||||||||||||||||||||||||| |||||||||  |||||| ||| 
seq2  ATGCTACACAGAAATCCCACATGGGATGGGATGGGCT--GTGGGA-ACAA  1095

seq1  CTTTAATCCCAGCACTCAGGAGGCAGAGGAGGCAGATCTCTTCCAGTT  1147
        || ||||||||||||| |||||||| || ||||||||||| |||||
seq2  ACTTTATCCCAGCACTCA-GAGGCAGATGA-GCAGATCTCTTTCAGTT  1141